data_9FCZ # _model_server_result.job_id 1xoiBNboizJTRsX17dCWXw _model_server_result.datetime_utc '2024-11-04 23:22:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 9FCZ # _exptl.entry_id 9FCZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 313.412 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(3-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 240-meric _pdbx_struct_assembly.oligomeric_count 240 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.30902 0.5 -0.80902 0.5 -0.80902 -0.30902 -0.80902 -0.30902 -0.5 218.25 353.14 571.39 3 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 436.5 436.5 -0.000015 4 'point symmetry operation' ? ? -0.30902 0.5 -0.80902 0.5 0.80902 0.30902 0.80902 -0.30902 -0.5 353.14 -134.89 218.25 5 'point symmetry operation' ? ? -0.80902 0.30902 -0.5 -0.30902 0.5 0.80902 0.5 0.80902 -0.30902 436.5 0.000008 -0.000012 6 'point symmetry operation' ? ? 0.5 0.80902 -0.30902 0.80902 -0.30902 0.5 0.30902 -0.5 -0.80902 -0.000012 0.00002 436.5 7 'point symmetry operation' ? ? 0.30902 -0.5 -0.80902 -0.5 -0.80902 0.30902 -0.80902 0.30902 -0.5 436.5 436.5 436.5 8 'point symmetry operation' ? ? -0.30902 -0.5 -0.80902 0.5 -0.80902 0.30902 -0.80902 -0.30902 0.5 571.39 218.25 353.14 9 'point symmetry operation' ? ? -0.5 0.80902 -0.30902 -0.80902 -0.30902 0.5 0.30902 0.5 0.80902 218.25 353.14 -134.89 10 'point symmetry operation' ? ? 0.80902 0.30902 -0.5 0.30902 0.5 0.80902 0.5 -0.80902 0.30902 83.364 -134.89 218.25 11 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 -0.000015 0.000015 0 12 'point symmetry operation' ? ? 0.80902 -0.30902 -0.5 0.30902 -0.5 0.80902 -0.5 -0.80902 -0.30902 218.25 83.364 571.39 13 'point symmetry operation' ? ? -0.80902 -0.30902 -0.5 -0.30902 -0.5 0.80902 -0.5 0.80902 0.30902 571.39 218.25 83.364 14 'point symmetry operation' ? ? -0.5 -0.80902 0.30902 0.80902 -0.30902 0.5 -0.30902 0.5 0.80902 436.5 0.00002 -0.000008 15 'point symmetry operation' ? ? -0.30902 0.5 0.80902 -0.5 -0.80902 0.30902 0.80902 -0.30902 0.5 -0.000008 436.5 0.000005 16 'point symmetry operation' ? ? 0.80902 -0.30902 0.5 -0.30902 0.5 0.80902 -0.5 -0.80902 0.30902 0.000005 0.000008 436.5 17 'point symmetry operation' ? ? 0.80902 0.30902 0.5 -0.30902 -0.5 0.80902 0.5 -0.80902 -0.30902 -134.89 218.25 353.14 18 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 436.5 0.000015 436.5 19 'point symmetry operation' ? ? -0.80902 0.30902 0.5 0.30902 -0.5 0.80902 0.5 0.80902 0.30902 218.25 83.364 -134.89 20 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0.000015 -0.000015 21 'point symmetry operation' ? ? 0.30902 -0.5 0.80902 -0.5 -0.80902 -0.30902 0.80902 -0.30902 -0.5 83.364 571.39 218.25 22 'point symmetry operation' ? ? -0.30902 -0.5 0.80902 -0.5 0.80902 0.30902 -0.80902 -0.30902 -0.5 218.25 83.364 571.39 23 'point symmetry operation' ? ? 0.5 -0.80902 0.30902 -0.80902 -0.30902 0.5 -0.30902 -0.5 -0.80902 218.25 353.14 571.39 24 'point symmetry operation' ? ? -0.80902 -0.30902 0.5 0.30902 0.5 0.80902 -0.5 0.80902 -0.30902 353.14 -134.89 218.25 25 'point symmetry operation' ? ? 0.30902 0.5 0.80902 0.5 -0.80902 0.30902 0.80902 0.30902 -0.5 -134.89 218.25 83.364 26 'point symmetry operation' ? ? 0.5 0.80902 0.30902 0.80902 -0.30902 -0.5 -0.30902 0.5 -0.80902 -134.89 218.25 353.14 27 'point symmetry operation' ? ? 0.5 -0.80902 -0.30902 -0.80902 -0.30902 -0.5 0.30902 0.5 -0.80902 353.14 571.39 218.25 28 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 436.5 0 436.5 29 'point symmetry operation' ? ? -0.5 -0.80902 -0.30902 -0.80902 0.30902 0.5 -0.30902 0.5 -0.80902 571.39 218.25 353.14 30 'point symmetry operation' ? ? -0.5 0.80902 0.30902 0.80902 0.30902 0.5 0.30902 0.5 -0.80902 83.364 -134.89 218.25 31 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 436.5 436.5 32 'point symmetry operation' ? ? 0.30902 0.5 -0.80902 -0.5 0.80902 0.30902 0.80902 0.30902 0.5 218.25 83.364 -134.89 33 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 436.5 0.000015 436.5 34 'point symmetry operation' ? ? -0.30902 0.5 -0.80902 -0.5 -0.80902 -0.30902 -0.80902 0.30902 0.5 353.14 571.39 218.25 35 'point symmetry operation' ? ? -0.80902 0.30902 -0.5 0.30902 -0.5 -0.80902 -0.5 -0.80902 0.30902 436.5 436.5 436.5 36 'point symmetry operation' ? ? 0.5 0.80902 -0.30902 -0.80902 0.30902 -0.5 -0.30902 0.5 0.80902 -0.000012 436.5 -0.000008 37 'point symmetry operation' ? ? 0.30902 -0.5 -0.80902 0.5 0.80902 -0.30902 0.80902 -0.30902 0.5 436.5 0.000003 0.000005 38 'point symmetry operation' ? ? -0.30902 -0.5 -0.80902 -0.5 0.80902 -0.30902 0.80902 0.30902 -0.5 571.39 218.25 83.364 39 'point symmetry operation' ? ? -0.5 0.80902 -0.30902 0.80902 0.30902 -0.5 -0.30902 -0.5 -0.80902 218.25 83.364 571.39 40 'point symmetry operation' ? ? 0.80902 0.30902 -0.5 -0.30902 -0.5 -0.80902 -0.5 0.80902 -0.30902 83.364 571.39 218.25 41 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 -0.000015 436.5 436.5 42 'point symmetry operation' ? ? 0.80902 -0.30902 -0.5 -0.30902 0.5 -0.80902 0.5 0.80902 0.30902 218.25 353.14 -134.89 43 'point symmetry operation' ? ? -0.80902 -0.30902 -0.5 0.30902 0.5 -0.80902 0.5 -0.80902 -0.30902 571.39 218.25 353.14 44 'point symmetry operation' ? ? -0.5 -0.80902 0.30902 -0.80902 0.30902 -0.5 0.30902 -0.5 -0.80902 436.5 436.5 436.5 45 'point symmetry operation' ? ? -0.30902 0.5 0.80902 0.5 0.80902 -0.30902 -0.80902 0.30902 -0.5 -0.000008 0.000003 436.5 46 'point symmetry operation' ? ? 0.80902 -0.30902 0.5 0.30902 -0.5 -0.80902 0.5 0.80902 -0.30902 0.000005 436.5 -0.000012 47 'point symmetry operation' ? ? 0.80902 0.30902 0.5 0.30902 0.5 -0.80902 -0.5 0.80902 0.30902 -134.89 218.25 83.364 48 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 436.5 436.5 0 49 'point symmetry operation' ? ? -0.80902 0.30902 0.5 -0.30902 0.5 -0.80902 -0.5 -0.80902 -0.30902 218.25 353.14 571.39 50 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 436.5 436.5 51 'point symmetry operation' ? ? 0.30902 -0.5 0.80902 0.5 0.80902 0.30902 -0.80902 0.30902 0.5 83.364 -134.89 218.25 52 'point symmetry operation' ? ? -0.30902 -0.5 0.80902 0.5 -0.80902 -0.30902 0.80902 0.30902 0.5 218.25 353.14 -134.89 53 'point symmetry operation' ? ? 0.5 -0.80902 0.30902 0.80902 0.30902 -0.5 0.30902 0.5 0.80902 218.25 83.364 -134.89 54 'point symmetry operation' ? ? -0.80902 -0.30902 0.5 -0.30902 -0.5 -0.80902 0.5 -0.80902 0.30902 353.14 571.39 218.25 55 'point symmetry operation' ? ? 0.30902 0.5 0.80902 -0.5 0.80902 -0.30902 -0.80902 -0.30902 0.5 -134.89 218.25 353.14 56 'point symmetry operation' ? ? 0.5 0.80902 0.30902 -0.80902 0.30902 0.5 0.30902 -0.5 0.80902 -134.89 218.25 83.364 57 'point symmetry operation' ? ? 0.5 -0.80902 -0.30902 0.80902 0.30902 0.5 -0.30902 -0.5 0.80902 353.14 -134.89 218.25 58 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 436.5 436.5 0 59 'point symmetry operation' ? ? -0.5 -0.80902 -0.30902 0.80902 -0.30902 -0.5 0.30902 -0.5 0.80902 571.39 218.25 83.364 60 'point symmetry operation' ? ? -0.5 0.80902 0.30902 -0.80902 -0.30902 -0.5 -0.30902 -0.5 0.80902 83.364 571.39 218.25 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 F N3' _chem_comp.formula_weight 313.412 _chem_comp.id A1IB2 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(3-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C19 A1IB2 doub 1 n y C18 C17 A1IB2 sing 2 n y C19 C14 A1IB2 sing 3 n y C17 C16 A1IB2 doub 4 n y C14 C13 A1IB2 sing 5 n n C14 C15 A1IB2 doub 6 n y C13 N3 A1IB2 sing 7 n n C16 C15 A1IB2 sing 8 n y C16 F1 A1IB2 sing 9 n n C9 C8 A1IB2 doub 10 n y C9 C12 A1IB2 sing 11 n y C8 C7 A1IB2 sing 12 n y N3 C12 A1IB2 sing 13 n n C12 C11 A1IB2 doub 14 n y C7 C6 A1IB2 sing 15 n n C7 C10 A1IB2 doub 16 n y C3 C2 A1IB2 sing 17 n n C3 N2 A1IB2 sing 18 n n C6 N2 A1IB2 sing 19 n n C11 C10 A1IB2 sing 20 n y C2 N1 A1IB2 sing 21 n n N2 C5 A1IB2 sing 22 n n N1 C1 A1IB2 sing 23 n n N1 C4 A1IB2 sing 24 n n C5 C4 A1IB2 sing 25 n n C1 H3 A1IB2 sing 26 n n C1 H2 A1IB2 sing 27 n n C1 H1 A1IB2 sing 28 n n C2 H4 A1IB2 sing 29 n n C2 H5 A1IB2 sing 30 n n C3 H7 A1IB2 sing 31 n n C3 H6 A1IB2 sing 32 n n C4 H9 A1IB2 sing 33 n n C4 H8 A1IB2 sing 34 n n C5 H10 A1IB2 sing 35 n n C5 H11 A1IB2 sing 36 n n C6 H12 A1IB2 sing 37 n n C6 H13 A1IB2 sing 38 n n C8 H14 A1IB2 sing 39 n n C9 H15 A1IB2 sing 40 n n C10 H16 A1IB2 sing 41 n n C11 H17 A1IB2 sing 42 n n N3 H18 A1IB2 sing 43 n n C13 H19 A1IB2 sing 44 n n C13 H20 A1IB2 sing 45 n n C15 H21 A1IB2 sing 46 n n C17 H22 A1IB2 sing 47 n n C18 H23 A1IB2 sing 48 n n C19 H24 A1IB2 sing 49 n n # _atom_sites.entry_id 9FCZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 A1IB2 A 1 301 301 A1IB2 UNL . F 6 MYR D 1 101 101 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IB2 . . . E 5 271.453 182.197 337.224 1 0 ? C1 A1IB2 301 A 1 HETATM 2 N N1 A1IB2 . . . E 5 271.097 183.383 336.439 1 0 ? N1 A1IB2 301 A 1 HETATM 3 C C2 A1IB2 . . . E 5 272.327 184.171 336.282 1 0 ? C2 A1IB2 301 A 1 HETATM 4 C C3 A1IB2 . . . E 5 272.009 185.489 335.575 1 0 ? C3 A1IB2 301 A 1 HETATM 5 C C4 A1IB2 . . . E 5 270.185 184.18 337.267 1 0 ? C4 A1IB2 301 A 1 HETATM 6 C C5 A1IB2 . . . E 5 269.866 185.498 336.561 1 0 ? C5 A1IB2 301 A 1 HETATM 7 N N2 A1IB2 . . . E 5 271.096 186.285 336.405 1 0 ? N2 A1IB2 301 A 1 HETATM 8 C C6 A1IB2 . . . E 5 270.739 187.474 335.62 1 0 ? C6 A1IB2 301 A 1 HETATM 9 C C7 A1IB2 . . . E 5 271.995 188.2 335.213 1 0 ? C7 A1IB2 301 A 1 HETATM 10 C C8 A1IB2 . . . E 5 272.621 187.884 334.02 1 0 ? C8 A1IB2 301 A 1 HETATM 11 C C9 A1IB2 . . . E 5 273.77 188.551 333.643 1 0 ? C9 A1IB2 301 A 1 HETATM 12 C C10 A1IB2 . . . E 5 272.517 189.189 336.03 1 0 ? C10 A1IB2 301 A 1 HETATM 13 C C11 A1IB2 . . . E 5 273.666 189.858 335.659 1 0 ? C11 A1IB2 301 A 1 HETATM 14 C C12 A1IB2 . . . E 5 274.3 189.537 334.464 1 0 ? C12 A1IB2 301 A 1 HETATM 15 N N3 A1IB2 . . . E 5 275.464 190.212 334.087 1 0 ? N3 A1IB2 301 A 1 HETATM 16 C C13 A1IB2 . . . E 5 276.13 189.876 332.827 1 0 ? C13 A1IB2 301 A 1 HETATM 17 C C14 A1IB2 . . . E 5 277.352 190.74 332.656 1 0 ? C14 A1IB2 301 A 1 HETATM 18 C C15 A1IB2 . . . E 5 278.572 190.318 333.149 1 0 ? C15 A1IB2 301 A 1 HETATM 19 C C16 A1IB2 . . . E 5 279.693 191.113 332.991 1 0 ? C16 A1IB2 301 A 1 HETATM 20 F F1 A1IB2 . . . E 5 280.888 190.701 333.471 1 0 ? F1 A1IB2 301 A 1 HETATM 21 C C17 A1IB2 . . . E 5 279.591 192.333 332.341 1 0 ? C17 A1IB2 301 A 1 HETATM 22 C C18 A1IB2 . . . E 5 278.37 192.753 331.85 1 0 ? C18 A1IB2 301 A 1 HETATM 23 C C19 A1IB2 . . . E 5 277.251 191.954 332.004 1 0 ? C19 A1IB2 301 A 1 HETATM 24 H H3 A1IB2 . . . E 5 272.215 181.625 336.695 1 0 ? H3 A1IB2 301 A 1 HETATM 25 H H2 A1IB2 . . . E 5 270.569 181.577 337.367 1 0 ? H2 A1IB2 301 A 1 HETATM 26 H H1 A1IB2 . . . E 5 271.843 182.505 338.194 1 0 ? H1 A1IB2 301 A 1 HETATM 27 H H4 A1IB2 . . . E 5 272.751 184.379 337.264 1 0 ? H4 A1IB2 301 A 1 HETATM 28 H H5 A1IB2 . . . E 5 273.047 183.605 335.688 1 0 ? H5 A1IB2 301 A 1 HETATM 29 H H7 A1IB2 . . . E 5 271.539 185.282 334.616 1 0 ? H7 A1IB2 301 A 1 HETATM 30 H H6 A1IB2 . . . E 5 272.932 186.047 335.415 1 0 ? H6 A1IB2 301 A 1 HETATM 31 H H9 A1IB2 . . . E 5 270.654 184.388 338.228 1 0 ? H9 A1IB2 301 A 1 HETATM 32 H H8 A1IB2 . . . E 5 269.263 183.624 337.429 1 0 ? H8 A1IB2 301 A 1 HETATM 33 H H10 A1IB2 . . . E 5 269.441 185.291 335.58 1 0 ? H10 A1IB2 301 A 1 HETATM 34 H H11 A1IB2 . . . E 5 269.146 186.063 337.155 1 0 ? H11 A1IB2 301 A 1 HETATM 35 H H12 A1IB2 . . . E 5 270.192 187.17 334.729 1 0 ? H12 A1IB2 301 A 1 HETATM 36 H H13 A1IB2 . . . E 5 270.116 188.135 336.223 1 0 ? H13 A1IB2 301 A 1 HETATM 37 H H14 A1IB2 . . . E 5 272.208 187.116 333.383 1 0 ? H14 A1IB2 301 A 1 HETATM 38 H H15 A1IB2 . . . E 5 274.259 188.302 332.714 1 0 ? H15 A1IB2 301 A 1 HETATM 39 H H16 A1IB2 . . . E 5 272.023 189.435 336.959 1 0 ? H16 A1IB2 301 A 1 HETATM 40 H H17 A1IB2 . . . E 5 274.073 190.629 336.297 1 0 ? H17 A1IB2 301 A 1 HETATM 41 H H18 A1IB2 . . . E 5 275.829 190.905 334.658 1 0 ? H18 A1IB2 301 A 1 HETATM 42 H H19 A1IB2 . . . E 5 276.428 188.825 332.844 1 0 ? H19 A1IB2 301 A 1 HETATM 43 H H20 A1IB2 . . . E 5 275.445 190.044 331.996 1 0 ? H20 A1IB2 301 A 1 HETATM 44 H H21 A1IB2 . . . E 5 278.65 189.367 333.655 1 0 ? H21 A1IB2 301 A 1 HETATM 45 H H22 A1IB2 . . . E 5 280.466 192.952 332.219 1 0 ? H22 A1IB2 301 A 1 HETATM 46 H H23 A1IB2 . . . E 5 278.29 193.703 331.344 1 0 ? H23 A1IB2 301 A 1 HETATM 47 H H24 A1IB2 . . . E 5 276.297 192.285 331.619 1 0 ? H24 A1IB2 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 47 #