data_9FDH # _model_server_result.job_id rRbx4_Jtg_fMNDY2k28Qwg _model_server_result.datetime_utc '2025-07-29 05:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 9FDH # _exptl.entry_id 9FDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FDH _cell.length_a 38.845 _cell.length_b 91.626 _cell.length_c 108.734 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 24 A ASP 23 1_555 H NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc2 A O ARG 39 A ARG 38 1_555 H NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc3 A OD2 ASP 375 A ASP 374 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 B O2B ADP . A ADP 501 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc5 B O2A ADP . A ADP 501 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc6 C OAH X15 . A X15 502 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 G MG MG . A MG 506 1_555 I O HOH . A HOH 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc8 G MG MG . A MG 506 1_555 I O HOH . A HOH 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc9 H NA NA . A NA 507 1_555 I O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc10 H NA NA . A NA 507 1_555 I O HOH . A HOH 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9FDH _atom_sites.fract_transf_matrix[1][1] 0.025743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 1 ADP ADP . C 3 X15 A 1 502 2 X15 X15 . D 4 PEG A 1 503 1 PEG PEG . E 4 PEG A 1 504 2 PEG PEG . F 5 CL A 1 505 418 CL CL . G 6 MG A 1 506 1 MG MG . H 7 NA A 1 507 1 NA NA . I 8 HOH A 1 601 276 HOH HOH . I 8 HOH A 2 602 202 HOH HOH . I 8 HOH A 3 603 140 HOH HOH . I 8 HOH A 4 604 200 HOH HOH . I 8 HOH A 5 605 295 HOH HOH . I 8 HOH A 6 606 3 HOH HOH . I 8 HOH A 7 607 232 HOH HOH . I 8 HOH A 8 608 219 HOH HOH . I 8 HOH A 9 609 180 HOH HOH . I 8 HOH A 10 610 49 HOH HOH . I 8 HOH A 11 611 110 HOH HOH . I 8 HOH A 12 612 89 HOH HOH . I 8 HOH A 13 613 290 HOH HOH . I 8 HOH A 14 614 32 HOH HOH . I 8 HOH A 15 615 142 HOH HOH . I 8 HOH A 16 616 15 HOH HOH . I 8 HOH A 17 617 164 HOH HOH . I 8 HOH A 18 618 116 HOH HOH . I 8 HOH A 19 619 231 HOH HOH . I 8 HOH A 20 620 53 HOH HOH . I 8 HOH A 21 621 145 HOH HOH . I 8 HOH A 22 622 297 HOH HOH . I 8 HOH A 23 623 105 HOH HOH . I 8 HOH A 24 624 135 HOH HOH . I 8 HOH A 25 625 51 HOH HOH . I 8 HOH A 26 626 102 HOH HOH . I 8 HOH A 27 627 184 HOH HOH . I 8 HOH A 28 628 162 HOH HOH . I 8 HOH A 29 629 72 HOH HOH . I 8 HOH A 30 630 7 HOH HOH . I 8 HOH A 31 631 46 HOH HOH . I 8 HOH A 32 632 90 HOH HOH . I 8 HOH A 33 633 100 HOH HOH . I 8 HOH A 34 634 120 HOH HOH . I 8 HOH A 35 635 88 HOH HOH . I 8 HOH A 36 636 150 HOH HOH . I 8 HOH A 37 637 254 HOH HOH . I 8 HOH A 38 638 155 HOH HOH . I 8 HOH A 39 639 45 HOH HOH . I 8 HOH A 40 640 123 HOH HOH . I 8 HOH A 41 641 258 HOH HOH . I 8 HOH A 42 642 76 HOH HOH . I 8 HOH A 43 643 287 HOH HOH . I 8 HOH A 44 644 181 HOH HOH . I 8 HOH A 45 645 58 HOH HOH . I 8 HOH A 46 646 9 HOH HOH . I 8 HOH A 47 647 40 HOH HOH . I 8 HOH A 48 648 172 HOH HOH . I 8 HOH A 49 649 152 HOH HOH . I 8 HOH A 50 650 66 HOH HOH . I 8 HOH A 51 651 159 HOH HOH . I 8 HOH A 52 652 22 HOH HOH . I 8 HOH A 53 653 34 HOH HOH . I 8 HOH A 54 654 271 HOH HOH . I 8 HOH A 55 655 130 HOH HOH . I 8 HOH A 56 656 107 HOH HOH . I 8 HOH A 57 657 174 HOH HOH . I 8 HOH A 58 658 113 HOH HOH . I 8 HOH A 59 659 28 HOH HOH . I 8 HOH A 60 660 211 HOH HOH . I 8 HOH A 61 661 63 HOH HOH . I 8 HOH A 62 662 111 HOH HOH . I 8 HOH A 63 663 78 HOH HOH . I 8 HOH A 64 664 214 HOH HOH . I 8 HOH A 65 665 138 HOH HOH . I 8 HOH A 66 666 23 HOH HOH . I 8 HOH A 67 667 67 HOH HOH . I 8 HOH A 68 668 127 HOH HOH . I 8 HOH A 69 669 132 HOH HOH . I 8 HOH A 70 670 12 HOH HOH . I 8 HOH A 71 671 4 HOH HOH . I 8 HOH A 72 672 82 HOH HOH . I 8 HOH A 73 673 104 HOH HOH . I 8 HOH A 74 674 10 HOH HOH . I 8 HOH A 75 675 47 HOH HOH . I 8 HOH A 76 676 27 HOH HOH . I 8 HOH A 77 677 119 HOH HOH . I 8 HOH A 78 678 77 HOH HOH . I 8 HOH A 79 679 11 HOH HOH . I 8 HOH A 80 680 8 HOH HOH . I 8 HOH A 81 681 122 HOH HOH . I 8 HOH A 82 682 73 HOH HOH . I 8 HOH A 83 683 240 HOH HOH . I 8 HOH A 84 684 81 HOH HOH . I 8 HOH A 85 685 21 HOH HOH . I 8 HOH A 86 686 95 HOH HOH . I 8 HOH A 87 687 94 HOH HOH . I 8 HOH A 88 688 2 HOH HOH . I 8 HOH A 89 689 13 HOH HOH . I 8 HOH A 90 690 24 HOH HOH . I 8 HOH A 91 691 114 HOH HOH . I 8 HOH A 92 692 103 HOH HOH . I 8 HOH A 93 693 52 HOH HOH . I 8 HOH A 94 694 129 HOH HOH . I 8 HOH A 95 695 6 HOH HOH . I 8 HOH A 96 696 156 HOH HOH . I 8 HOH A 97 697 30 HOH HOH . I 8 HOH A 98 698 185 HOH HOH . I 8 HOH A 99 699 117 HOH HOH . I 8 HOH A 100 700 87 HOH HOH . I 8 HOH A 101 701 233 HOH HOH . I 8 HOH A 102 702 1 HOH HOH . I 8 HOH A 103 703 112 HOH HOH . I 8 HOH A 104 704 176 HOH HOH . I 8 HOH A 105 705 149 HOH HOH . I 8 HOH A 106 706 86 HOH HOH . I 8 HOH A 107 707 167 HOH HOH . I 8 HOH A 108 708 57 HOH HOH . I 8 HOH A 109 709 17 HOH HOH . I 8 HOH A 110 710 188 HOH HOH . I 8 HOH A 111 711 226 HOH HOH . I 8 HOH A 112 712 196 HOH HOH . I 8 HOH A 113 713 26 HOH HOH . I 8 HOH A 114 714 170 HOH HOH . I 8 HOH A 115 715 143 HOH HOH . I 8 HOH A 116 716 62 HOH HOH . I 8 HOH A 117 717 193 HOH HOH . I 8 HOH A 118 718 16 HOH HOH . I 8 HOH A 119 719 38 HOH HOH . I 8 HOH A 120 720 70 HOH HOH . I 8 HOH A 121 721 166 HOH HOH . I 8 HOH A 122 722 133 HOH HOH . I 8 HOH A 123 723 74 HOH HOH . I 8 HOH A 124 724 125 HOH HOH . I 8 HOH A 125 725 128 HOH HOH . I 8 HOH A 126 726 65 HOH HOH . I 8 HOH A 127 727 33 HOH HOH . I 8 HOH A 128 728 96 HOH HOH . I 8 HOH A 129 729 43 HOH HOH . I 8 HOH A 130 730 19 HOH HOH . I 8 HOH A 131 731 183 HOH HOH . I 8 HOH A 132 732 179 HOH HOH . I 8 HOH A 133 733 18 HOH HOH . I 8 HOH A 134 734 146 HOH HOH . I 8 HOH A 135 735 55 HOH HOH . I 8 HOH A 136 736 279 HOH HOH . I 8 HOH A 137 737 25 HOH HOH . I 8 HOH A 138 738 60 HOH HOH . I 8 HOH A 139 739 79 HOH HOH . I 8 HOH A 140 740 151 HOH HOH . I 8 HOH A 141 741 294 HOH HOH . I 8 HOH A 142 742 14 HOH HOH . I 8 HOH A 143 743 64 HOH HOH . I 8 HOH A 144 744 153 HOH HOH . I 8 HOH A 145 745 175 HOH HOH . I 8 HOH A 146 746 118 HOH HOH . I 8 HOH A 147 747 269 HOH HOH . I 8 HOH A 148 748 215 HOH HOH . I 8 HOH A 149 749 148 HOH HOH . I 8 HOH A 150 750 42 HOH HOH . I 8 HOH A 151 751 98 HOH HOH . I 8 HOH A 152 752 91 HOH HOH . I 8 HOH A 153 753 255 HOH HOH . I 8 HOH A 154 754 173 HOH HOH . I 8 HOH A 155 755 203 HOH HOH . I 8 HOH A 156 756 286 HOH HOH . I 8 HOH A 157 757 285 HOH HOH . I 8 HOH A 158 758 61 HOH HOH . I 8 HOH A 159 759 48 HOH HOH . I 8 HOH A 160 760 191 HOH HOH . I 8 HOH A 161 761 108 HOH HOH . I 8 HOH A 162 762 56 HOH HOH . I 8 HOH A 163 763 126 HOH HOH . I 8 HOH A 164 764 92 HOH HOH . I 8 HOH A 165 765 41 HOH HOH . I 8 HOH A 166 766 5 HOH HOH . I 8 HOH A 167 767 20 HOH HOH . I 8 HOH A 168 768 54 HOH HOH . I 8 HOH A 169 769 83 HOH HOH . I 8 HOH A 170 770 131 HOH HOH . I 8 HOH A 171 771 99 HOH HOH . I 8 HOH A 172 772 192 HOH HOH . I 8 HOH A 173 773 36 HOH HOH . I 8 HOH A 174 774 80 HOH HOH . I 8 HOH A 175 775 243 HOH HOH . I 8 HOH A 176 776 29 HOH HOH . I 8 HOH A 177 777 147 HOH HOH . I 8 HOH A 178 778 39 HOH HOH . I 8 HOH A 179 779 268 HOH HOH . I 8 HOH A 180 780 154 HOH HOH . I 8 HOH A 181 781 71 HOH HOH . I 8 HOH A 182 782 177 HOH HOH . I 8 HOH A 183 783 165 HOH HOH . I 8 HOH A 184 784 35 HOH HOH . I 8 HOH A 185 785 97 HOH HOH . I 8 HOH A 186 786 106 HOH HOH . I 8 HOH A 187 787 68 HOH HOH . I 8 HOH A 188 788 139 HOH HOH . I 8 HOH A 189 789 169 HOH HOH . I 8 HOH A 190 790 31 HOH HOH . I 8 HOH A 191 791 37 HOH HOH . I 8 HOH A 192 792 199 HOH HOH . I 8 HOH A 193 793 178 HOH HOH . I 8 HOH A 194 794 273 HOH HOH . I 8 HOH A 195 795 197 HOH HOH . I 8 HOH A 196 796 288 HOH HOH . I 8 HOH A 197 797 115 HOH HOH . I 8 HOH A 198 798 234 HOH HOH . I 8 HOH A 199 799 236 HOH HOH . I 8 HOH A 200 800 189 HOH HOH . I 8 HOH A 201 801 194 HOH HOH . I 8 HOH A 202 802 144 HOH HOH . I 8 HOH A 203 803 136 HOH HOH . I 8 HOH A 204 804 121 HOH HOH . I 8 HOH A 205 805 206 HOH HOH . I 8 HOH A 206 806 182 HOH HOH . I 8 HOH A 207 807 201 HOH HOH . I 8 HOH A 208 808 210 HOH HOH . I 8 HOH A 209 809 101 HOH HOH . I 8 HOH A 210 810 239 HOH HOH . I 8 HOH A 211 811 161 HOH HOH . I 8 HOH A 212 812 244 HOH HOH . I 8 HOH A 213 813 137 HOH HOH . I 8 HOH A 214 814 44 HOH HOH . I 8 HOH A 215 815 141 HOH HOH . I 8 HOH A 216 816 247 HOH HOH . I 8 HOH A 217 817 168 HOH HOH . I 8 HOH A 218 818 75 HOH HOH . I 8 HOH A 219 819 186 HOH HOH . I 8 HOH A 220 820 217 HOH HOH . I 8 HOH A 221 821 190 HOH HOH . I 8 HOH A 222 822 69 HOH HOH . I 8 HOH A 223 823 256 HOH HOH . I 8 HOH A 224 824 109 HOH HOH . I 8 HOH A 225 825 253 HOH HOH . I 8 HOH A 226 826 292 HOH HOH . I 8 HOH A 227 827 84 HOH HOH . I 8 HOH A 228 828 227 HOH HOH . I 8 HOH A 229 829 198 HOH HOH . I 8 HOH A 230 830 221 HOH HOH . I 8 HOH A 231 831 212 HOH HOH . I 8 HOH A 232 832 50 HOH HOH . I 8 HOH A 233 833 230 HOH HOH . I 8 HOH A 234 834 246 HOH HOH . I 8 HOH A 235 835 260 HOH HOH . I 8 HOH A 236 836 171 HOH HOH . I 8 HOH A 237 837 207 HOH HOH . I 8 HOH A 238 838 157 HOH HOH . I 8 HOH A 239 839 85 HOH HOH . I 8 HOH A 240 840 59 HOH HOH . I 8 HOH A 241 841 274 HOH HOH . I 8 HOH A 242 842 237 HOH HOH . I 8 HOH A 243 843 251 HOH HOH . I 8 HOH A 244 844 134 HOH HOH . I 8 HOH A 245 845 242 HOH HOH . I 8 HOH A 246 846 158 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x -5.281 _atom_site.Cartn_y 10.336 _atom_site.Cartn_z -20.115 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 506 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #