data_9FFE # _model_server_result.job_id JNnmabOABX60rA4sjpt4gg _model_server_result.datetime_utc '2025-04-30 20:46:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ffe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 9FFE # _exptl.entry_id 9FFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.1 _cell.angle_beta 68.13 _cell.angle_gamma 74.28 _cell.entry_id 9FFE _cell.length_a 43.045 _cell.length_b 50.5 _cell.length_c 53.092 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 37 1_555 A SG CYS 59 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A OG SER 42 A SER 69 1_555 H C1 MAN . A MAN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A SG CYS 135 A CYS 162 1_555 C C6 FAD . A FAD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 352 n n C1 O1 NAG sing 353 n n C1 O5 NAG sing 354 n n C1 H1 NAG sing 355 n n C2 C3 NAG sing 356 n n C2 N2 NAG sing 357 n n C2 H2 NAG sing 358 n n C3 C4 NAG sing 359 n n C3 O3 NAG sing 360 n n C3 H3 NAG sing 361 n n C4 C5 NAG sing 362 n n C4 O4 NAG sing 363 n n C4 H4 NAG sing 364 n n C5 C6 NAG sing 365 n n C5 O5 NAG sing 366 n n C5 H5 NAG sing 367 n n C6 O6 NAG sing 368 n n C6 H61 NAG sing 369 n n C6 H62 NAG sing 370 n n C7 C8 NAG sing 371 n n C7 N2 NAG sing 372 n n C7 O7 NAG doub 373 n n C8 H81 NAG sing 374 n n C8 H82 NAG sing 375 n n C8 H83 NAG sing 376 n n N2 HN2 NAG sing 377 n n O1 HO1 NAG sing 378 n n O3 HO3 NAG sing 379 n n O4 HO4 NAG sing 380 n n O6 HO6 NAG sing 381 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9FFE _atom_sites.fract_transf_matrix[1][1] 0.023232 _atom_sites.fract_transf_matrix[1][2] -0.006539 _atom_sites.fract_transf_matrix[1][3] -0.009849 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020571 _atom_sites.fract_transf_matrix[2][3] 0.001565 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 601 NAG NAG . C 3 FAD A 1 602 603 FAD FAD . D 4 OXY A 1 603 604 OXY OXY . E 2 NAG A 1 604 605 NAG NAG . F 2 NAG A 1 605 606 NAG NAG . G 2 NAG A 1 606 607 NAG NAG . H 5 MAN A 1 607 608 MAN MAN . I 6 HOH A 1 701 63 HOH HOH . I 6 HOH A 2 702 58 HOH HOH . I 6 HOH A 3 703 104 HOH HOH . I 6 HOH A 4 704 73 HOH HOH . I 6 HOH A 5 705 25 HOH HOH . I 6 HOH A 6 706 40 HOH HOH . I 6 HOH A 7 707 37 HOH HOH . I 6 HOH A 8 708 62 HOH HOH . I 6 HOH A 9 709 45 HOH HOH . I 6 HOH A 10 710 2 HOH HOH . I 6 HOH A 11 711 17 HOH HOH . I 6 HOH A 12 712 91 HOH HOH . I 6 HOH A 13 713 72 HOH HOH . I 6 HOH A 14 714 32 HOH HOH . I 6 HOH A 15 715 70 HOH HOH . I 6 HOH A 16 716 41 HOH HOH . I 6 HOH A 17 717 28 HOH HOH . I 6 HOH A 18 718 68 HOH HOH . I 6 HOH A 19 719 93 HOH HOH . I 6 HOH A 20 720 31 HOH HOH . I 6 HOH A 21 721 24 HOH HOH . I 6 HOH A 22 722 54 HOH HOH . I 6 HOH A 23 723 13 HOH HOH . I 6 HOH A 24 724 111 HOH HOH . I 6 HOH A 25 725 8 HOH HOH . I 6 HOH A 26 726 67 HOH HOH . I 6 HOH A 27 727 56 HOH HOH . I 6 HOH A 28 728 64 HOH HOH . I 6 HOH A 29 729 15 HOH HOH . I 6 HOH A 30 730 29 HOH HOH . I 6 HOH A 31 731 35 HOH HOH . I 6 HOH A 32 732 53 HOH HOH . I 6 HOH A 33 733 94 HOH HOH . I 6 HOH A 34 734 61 HOH HOH . I 6 HOH A 35 735 55 HOH HOH . I 6 HOH A 36 736 51 HOH HOH . I 6 HOH A 37 737 90 HOH HOH . I 6 HOH A 38 738 33 HOH HOH . I 6 HOH A 39 739 48 HOH HOH . I 6 HOH A 40 740 6 HOH HOH . I 6 HOH A 41 741 26 HOH HOH . I 6 HOH A 42 742 16 HOH HOH . I 6 HOH A 43 743 89 HOH HOH . I 6 HOH A 44 744 36 HOH HOH . I 6 HOH A 45 745 4 HOH HOH . I 6 HOH A 46 746 65 HOH HOH . I 6 HOH A 47 747 47 HOH HOH . I 6 HOH A 48 748 92 HOH HOH . I 6 HOH A 49 749 77 HOH HOH . I 6 HOH A 50 750 9 HOH HOH . I 6 HOH A 51 751 80 HOH HOH . I 6 HOH A 52 752 38 HOH HOH . I 6 HOH A 53 753 3 HOH HOH . I 6 HOH A 54 754 49 HOH HOH . I 6 HOH A 55 755 59 HOH HOH . I 6 HOH A 56 756 27 HOH HOH . I 6 HOH A 57 757 110 HOH HOH . I 6 HOH A 58 758 109 HOH HOH . I 6 HOH A 59 759 10 HOH HOH . I 6 HOH A 60 760 97 HOH HOH . I 6 HOH A 61 761 46 HOH HOH . I 6 HOH A 62 762 20 HOH HOH . I 6 HOH A 63 763 105 HOH HOH . I 6 HOH A 64 764 42 HOH HOH . I 6 HOH A 65 765 7 HOH HOH . I 6 HOH A 66 766 85 HOH HOH . I 6 HOH A 67 767 1 HOH HOH . I 6 HOH A 68 768 71 HOH HOH . I 6 HOH A 69 769 5 HOH HOH . I 6 HOH A 70 770 98 HOH HOH . I 6 HOH A 71 771 44 HOH HOH . I 6 HOH A 72 772 69 HOH HOH . I 6 HOH A 73 773 102 HOH HOH . I 6 HOH A 74 774 66 HOH HOH . I 6 HOH A 75 775 75 HOH HOH . I 6 HOH A 76 776 99 HOH HOH . I 6 HOH A 77 777 11 HOH HOH . I 6 HOH A 78 778 74 HOH HOH . I 6 HOH A 79 779 22 HOH HOH . I 6 HOH A 80 780 81 HOH HOH . I 6 HOH A 81 781 43 HOH HOH . I 6 HOH A 82 782 23 HOH HOH . I 6 HOH A 83 783 100 HOH HOH . I 6 HOH A 84 784 106 HOH HOH . I 6 HOH A 85 785 18 HOH HOH . I 6 HOH A 86 786 34 HOH HOH . I 6 HOH A 87 787 78 HOH HOH . I 6 HOH A 88 788 95 HOH HOH . I 6 HOH A 89 789 21 HOH HOH . I 6 HOH A 90 790 112 HOH HOH . I 6 HOH A 91 791 108 HOH HOH . I 6 HOH A 92 792 88 HOH HOH . I 6 HOH A 93 793 12 HOH HOH . I 6 HOH A 94 794 103 HOH HOH . I 6 HOH A 95 795 96 HOH HOH . I 6 HOH A 96 796 57 HOH HOH . I 6 HOH A 97 797 60 HOH HOH . I 6 HOH A 98 798 101 HOH HOH . I 6 HOH A 99 799 84 HOH HOH . I 6 HOH A 100 800 76 HOH HOH . I 6 HOH A 101 801 50 HOH HOH . I 6 HOH A 102 802 19 HOH HOH . I 6 HOH A 103 803 52 HOH HOH . I 6 HOH A 104 804 39 HOH HOH . I 6 HOH A 105 805 82 HOH HOH . I 6 HOH A 106 806 86 HOH HOH . I 6 HOH A 107 807 79 HOH HOH . I 6 HOH A 108 808 83 HOH HOH . I 6 HOH A 109 809 107 HOH HOH . I 6 HOH A 110 810 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 18.941 -23.451 -5.584 1 54.06 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . B 2 20.115 -24.064 -6.296 1 55.92 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . B 2 20.36 -25.448 -5.761 1 56.51 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . B 2 20.541 -25.398 -4.247 1 58.16 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . B 2 19.48 -24.54 -3.545 1 54.26 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . B 2 19.881 -24.179 -2.133 1 56.64 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . B 2 20.892 -23.685 -8.591 1 56.58 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . B 2 22.164 -23.172 -7.975 1 57.08 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . B 2 19.944 -24.093 -7.738 1 54.73 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . B 2 21.547 -25.896 -6.403 1 59.99 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . B 2 20.442 -26.712 -3.711 1 69.43 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . B 2 19.253 -23.296 -4.23 1 54.57 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . B 2 21.047 -23.362 -2.124 1 57.6 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . B 2 20.728 -23.72 -9.806 1 65.78 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #