data_9FFJ # _model_server_result.job_id '_n_GimzlxJlCUjJAIZ6gUQ' _model_server_result.datetime_utc '2025-02-24 18:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ffj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 9FFJ # _exptl.entry_id 9FFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FFJ _cell.length_a 57.46 _cell.length_b 57.46 _cell.length_c 172.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 308 n n C1 C2 PEG sing 309 n n C1 H11 PEG sing 310 n n C1 H12 PEG sing 311 n n O1 HO1 PEG sing 312 n n C2 O2 PEG sing 313 n n C2 H21 PEG sing 314 n n C2 H22 PEG sing 315 n n O2 C3 PEG sing 316 n n C3 C4 PEG sing 317 n n C3 H31 PEG sing 318 n n C3 H32 PEG sing 319 n n C4 O4 PEG sing 320 n n C4 H41 PEG sing 321 n n C4 H42 PEG sing 322 n n O4 HO4 PEG sing 323 n n # _atom_sites.entry_id 9FFJ _atom_sites.fract_transf_matrix[1][1] 0.017403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 206 EDO EDO . C 3 A1ICD A 1 202 210 A1ICD YZT . D 4 PEG A 1 203 211 PEG PEG . E 4 PEG A 1 204 212 PEG PEG . F 2 EDO A 1 205 213 EDO EDO . G 5 SO4 A 1 206 1 SO4 SO4 . H 5 SO4 A 1 207 2 SO4 SO4 . I 6 NH4 A 1 208 1 NH4 NH4 . J 7 HOH A 1 301 17 HOH HOH . J 7 HOH A 2 302 13 HOH HOH . J 7 HOH A 3 303 32 HOH HOH . J 7 HOH A 4 304 4 HOH HOH . J 7 HOH A 5 305 9 HOH HOH . J 7 HOH A 6 306 7 HOH HOH . J 7 HOH A 7 307 1 HOH HOH . J 7 HOH A 8 308 5 HOH HOH . J 7 HOH A 9 309 6 HOH HOH . J 7 HOH A 10 310 25 HOH HOH . J 7 HOH A 11 311 37 HOH HOH . J 7 HOH A 12 312 39 HOH HOH . J 7 HOH A 13 313 50 HOH HOH . J 7 HOH A 14 314 31 HOH HOH . J 7 HOH A 15 315 11 HOH HOH . J 7 HOH A 16 316 21 HOH HOH . J 7 HOH A 17 317 14 HOH HOH . J 7 HOH A 18 318 2 HOH HOH . J 7 HOH A 19 319 41 HOH HOH . J 7 HOH A 20 320 48 HOH HOH . J 7 HOH A 21 321 3 HOH HOH . J 7 HOH A 22 322 10 HOH HOH . J 7 HOH A 23 323 23 HOH HOH . J 7 HOH A 24 324 51 HOH HOH . J 7 HOH A 25 325 8 HOH HOH . J 7 HOH A 26 326 46 HOH HOH . J 7 HOH A 27 327 45 HOH HOH . J 7 HOH A 28 328 27 HOH HOH . J 7 HOH A 29 329 15 HOH HOH . J 7 HOH A 30 330 36 HOH HOH . J 7 HOH A 31 331 12 HOH HOH . J 7 HOH A 32 332 33 HOH HOH . J 7 HOH A 33 333 29 HOH HOH . J 7 HOH A 34 334 16 HOH HOH . J 7 HOH A 35 335 43 HOH HOH . J 7 HOH A 36 336 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 -13.506 5.863 10.425 1 61.2 ? C1 PEG 203 A 1 HETATM 2 O O1 PEG . . . D 4 -13.859 6.891 9.523 1 62.23 ? O1 PEG 203 A 1 HETATM 3 C C2 PEG . . . D 4 -13.051 4.606 9.707 1 59.11 ? C2 PEG 203 A 1 HETATM 4 O O2 PEG . . . D 4 -11.721 4.696 9.239 1 60.42 ? O2 PEG 203 A 1 HETATM 5 C C3 PEG . . . D 4 -11.415 3.887 8.123 1 57.75 ? C3 PEG 203 A 1 HETATM 6 C C4 PEG . . . D 4 -9.975 3.429 8.107 1 52.81 ? C4 PEG 203 A 1 HETATM 7 O O4 PEG . . . D 4 -9.895 2.079 7.691 1 48.38 ? O4 PEG 203 A 1 HETATM 8 H H11 PEG . . . D 4 -14.259 5.633 10.992 1 73.46 ? H11 PEG 203 A 1 HETATM 9 H H12 PEG . . . D 4 -12.791 6.154 11.012 1 73.46 ? H12 PEG 203 A 1 HETATM 10 H HO1 PEG . . . D 4 -13.145 7.19 9.172 1 74.69 ? HO1 PEG 203 A 1 HETATM 11 H H21 PEG . . . D 4 -13.665 4.446 8.974 1 70.94 ? H21 PEG 203 A 1 HETATM 12 H H22 PEG . . . D 4 -13.151 3.862 10.322 1 70.94 ? H22 PEG 203 A 1 HETATM 13 H H31 PEG . . . D 4 -11.598 4.374 7.305 1 69.32 ? H31 PEG 203 A 1 HETATM 14 H H32 PEG . . . D 4 -11.991 3.106 8.116 1 69.32 ? H32 PEG 203 A 1 HETATM 15 H H41 PEG . . . D 4 -9.618 3.562 8.998 1 63.39 ? H41 PEG 203 A 1 HETATM 16 H H42 PEG . . . D 4 -9.488 4.026 7.518 1 63.39 ? H42 PEG 203 A 1 HETATM 17 H HO4 PEG . . . D 4 -9.074 1.864 7.653 1 58.08 ? HO4 PEG 203 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #