data_9FHB
#
_model_server_result.job_id            alm_3rWF8JGE5NKYAITXlA 
_model_server_result.datetime_utc      '2024-12-23 00:15:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fhb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1002}' 
#
_entry.id    9FHB 
#
_exptl.entry_id    9FHB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9FHB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FHB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 149 C CYS 149 1_555 C SG CYS 266 C CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 C SG CYS 309 C CYS 309 1_555 C SG CYS 340 C CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 C SG CYS 351 C CYS 351 1_555 C SG CYS 381 C CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 168 D CYS 168 1_555 D SG CYS 202 D CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 D SG CYS 184 D CYS 184 1_555 D SG CYS 248 D CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 D SG CYS 197 D CYS 197 1_555 D SG CYS 258 D CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 228 D CYS 228 1_555 D SG CYS 238 D CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 D SG CYS 275 D CYS 275 1_555 D SG CYS 309 D CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 D SG CYS 291 D CYS 291 1_555 D SG CYS 355 D CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf10 D SG CYS 304 D CYS 304 1_555 D SG CYS 365 D CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 D SG CYS 335 D CYS 335 1_555 D SG CYS 345 D CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf12 D SG CYS 382 D CYS 382 1_555 D SG CYS 416 D CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf13 D SG CYS 398 D CYS 398 1_555 D SG CYS 462 D CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 D SG CYS 411 D CYS 411 1_555 D SG CYS 472 D CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf15 D SG CYS 442 D CYS 442 1_555 D SG CYS 452 D CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 C ND2 ASN 184 C ASN 184 1_555 G C1 NAG . C NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? 
covale ? covale2 C ND2 ASN 241 C ASN 241 1_555 H C1 NAG . C NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.527 ? 
covale ? covale3 D ND2 ASN 320 D ASN 320 1_555 K C1 NAG . D NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
metalc ? metalc1 A NE2 HIS 88 A HIS 87 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc2 B NE2 HIS 93 B HIS 92 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc3 D OD2 ASP 186 D ASP 186 1_555 I CA CA . D CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc4 D OD1 ASP 224 D ASP 224 1_555 I CA CA . D CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc5 D OD2 ASP 224 D ASP 224 1_555 I CA CA . D CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc6 D OD1 ASP 225 D ASP 225 1_555 I CA CA . D CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc7 D OD1 ASN 247 D ASN 247 1_555 I CA CA . D CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc8 D O GLY 294 D GLY 294 1_555 J CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc9 D OD2 ASP 296 D ASP 296 1_555 J CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? 
metalc ? metalc10 D OD2 ASP 299 D ASP 299 1_555 J CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc11 D O VAL 333 D VAL 333 1_555 J CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 317 n n 
C1 O1 NAG sing 318 n n 
C1 O5 NAG sing 319 n n 
C1 H1 NAG sing 320 n n 
C2 C3 NAG sing 321 n n 
C2 N2 NAG sing 322 n n 
C2 H2 NAG sing 323 n n 
C3 C4 NAG sing 324 n n 
C3 O3 NAG sing 325 n n 
C3 H3 NAG sing 326 n n 
C4 C5 NAG sing 327 n n 
C4 O4 NAG sing 328 n n 
C4 H4 NAG sing 329 n n 
C5 C6 NAG sing 330 n n 
C5 O5 NAG sing 331 n n 
C5 H5 NAG sing 332 n n 
C6 O6 NAG sing 333 n n 
C6 H61 NAG sing 334 n n 
C6 H62 NAG sing 335 n n 
C7 C8 NAG sing 336 n n 
C7 N2 NAG sing 337 n n 
C7 O7 NAG doub 338 n n 
C8 H81 NAG sing 339 n n 
C8 H82 NAG sing 340 n n 
C8 H83 NAG sing 341 n n 
N2 HN2 NAG sing 342 n n 
O1 HO1 NAG sing 343 n n 
O3 HO3 NAG sing 344 n n 
O4 HO4 NAG sing 345 n n 
O6 HO6 NAG sing 346 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9FHB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEM A 1 201 142 HEM HEM . 
F 5 HEM B 1 201 147 HEM HEM . 
G 6 NAG C 1 1001 1001 NAG NAG . 
H 6 NAG C 1 1002 1002 NAG NAG . 
I 7 CA D 1 2001 2001 CA CA . 
J 7 CA D 1 2002 2002 CA CA . 
K 6 NAG D 1 2003 3001 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 6 188.629 193.245 115.411 1 87.35 ? C1 NAG 1002 C 1 
HETATM 2 C C2 NAG . . . H 6 188.082 192.806 114.04 1 87.35 ? C2 NAG 1002 C 1 
HETATM 3 C C3 NAG . . . H 6 188.388 193.87 112.988 1 87.35 ? C3 NAG 1002 C 1 
HETATM 4 C C4 NAG . . . H 6 187.888 195.231 113.446 1 87.35 ? C4 NAG 1002 C 1 
HETATM 5 C C5 NAG . . . H 6 188.496 195.548 114.813 1 87.35 ? C5 NAG 1002 C 1 
HETATM 6 C C6 NAG . . . H 6 188.013 196.861 115.381 1 87.35 ? C6 NAG 1002 C 1 
HETATM 7 C C7 NAG . . . H 6 188.117 190.716 112.725 1 87.35 ? C7 NAG 1002 C 1 
HETATM 8 C C8 NAG . . . H 6 188.912 189.462 112.457 1 87.35 ? C8 NAG 1002 C 1 
HETATM 9 N N2 NAG . . . H 6 188.66 191.554 113.628 1 87.35 ? N2 NAG 1002 C 1 
HETATM 10 O O3 NAG . . . H 6 187.794 193.489 111.775 1 87.35 ? O3 NAG 1002 C 1 
HETATM 11 O O4 NAG . . . H 6 188.275 196.169 112.469 1 87.35 ? O4 NAG 1002 C 1 
HETATM 12 O O5 NAG . . . H 6 188.143 194.529 115.721 1 87.35 ? O5 NAG 1002 C 1 
HETATM 13 O O6 NAG . . . H 6 186.606 196.846 115.437 1 87.35 ? O6 NAG 1002 C 1 
HETATM 14 O O7 NAG . . . H 6 187.061 190.936 112.153 1 87.35 ? O7 NAG 1002 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#