data_9FIU # _model_server_result.job_id YPixWDWggv15ZFGzBBvwww _model_server_result.datetime_utc '2024-11-07 06:40:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 9FIU # _exptl.entry_id 9FIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 666.789 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[[1-[(3~{R},4~{R})-1-[5-(3-methoxypyridin-4-yl)thiophen-2-yl]carbonyl-3-phenyl-piperidin-4-yl]carbonyl-4-oxidanyl-piperidin-4-yl]methyl]-7-methyl-pyrrolo[2,3-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.22 _cell.angle_gamma 90 _cell.entry_id 9FIU _cell.length_a 74.88 _cell.length_b 68.23 _cell.length_c 76.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C36 H38 N6 O5 S' _chem_comp.formula_weight 666.789 _chem_comp.id A1ICX _chem_comp.mon_nstd_flag . _chem_comp.name 3-[[1-[(3~{R},4~{R})-1-[5-(3-methoxypyridin-4-yl)thiophen-2-yl]carbonyl-3-phenyl-piperidin-4-yl]carbonyl-4-oxidanyl-piperidin-4-yl]methyl]-7-methyl-pyrrolo[2,3-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N31 C30 A1ICX doub 1 n n N31 C32 A1ICX sing 2 n n C30 N40 A1ICX sing 3 n n C33 N34 A1ICX sing 4 n n C32 N34 A1ICX sing 5 n y C32 C37 A1ICX doub 6 n y N34 C35 A1ICX sing 7 n y N40 C41 A1ICX sing 8 n n N40 C39 A1ICX sing 9 n n C41 C43 A1ICX sing 10 n n O42 C43 A1ICX sing 11 n n C37 C39 A1ICX sing 12 n n C37 C36 A1ICX sing 13 n y C39 O38 A1ICX doub 14 n n C35 C36 A1ICX doub 15 n y C29 C43 A1ICX sing 16 n n C29 C28 A1ICX sing 17 n n C43 C44 A1ICX sing 18 n n C28 N46 A1ICX sing 19 n n C44 C45 A1ICX sing 20 n n N46 C45 A1ICX sing 21 n n N46 C47 A1ICX sing 22 n n O27 C47 A1ICX doub 23 n n C47 C48 A1ICX sing 24 n n C22 C23 A1ICX doub 25 n y C22 C21 A1ICX sing 26 n y C23 C24 A1ICX sing 27 n y C21 C20 A1ICX doub 28 n y C24 C25 A1ICX doub 29 n y C20 C25 A1ICX sing 30 n y C25 C26 A1ICX sing 31 n n C48 C26 A1ICX sing 32 n n C48 C01 A1ICX sing 33 n n C26 C19 A1ICX sing 34 n n C01 C02 A1ICX sing 35 n n C19 N18 A1ICX sing 36 n n C02 N18 A1ICX sing 37 n n N18 C17 A1ICX sing 38 n n C17 O03 A1ICX doub 39 n n C17 C16 A1ICX sing 40 n n S04 C16 A1ICX sing 41 n y S04 C13 A1ICX sing 42 n y C16 C15 A1ICX doub 43 n y C07 C08 A1ICX doub 44 n y C07 C12 A1ICX sing 45 n y C08 N09 A1ICX sing 46 n y C15 C14 A1ICX sing 47 n y C13 C12 A1ICX sing 48 n n C13 C14 A1ICX doub 49 n y C12 C11 A1ICX doub 50 n y N09 C10 A1ICX doub 51 n y C11 C10 A1ICX sing 52 n y C11 O06 A1ICX sing 53 n n O06 C05 A1ICX sing 54 n n C10 H10 A1ICX sing 55 n n C15 H15 A1ICX sing 56 n n C20 H20 A1ICX sing 57 n n C21 H21 A1ICX sing 58 n n C24 H24 A1ICX sing 59 n n C28 H28 A1ICX sing 60 n n C28 H29 A1ICX sing 61 n n C01 H01 A1ICX sing 62 n n C01 H02 A1ICX sing 63 n n C02 H03 A1ICX sing 64 n n C02 H04 A1ICX sing 65 n n C05 H07 A1ICX sing 66 n n C05 H05 A1ICX sing 67 n n C05 H06 A1ICX sing 68 n n C07 H08 A1ICX sing 69 n n C14 H14 A1ICX sing 70 n n C19 H2A A1ICX sing 71 n n C19 H19 A1ICX sing 72 n n C29 H3A A1ICX sing 73 n n C29 H3B A1ICX sing 74 n n C30 H30 A1ICX sing 75 n n C33 H35 A1ICX sing 76 n n C33 H33 A1ICX sing 77 n n C33 H34 A1ICX sing 78 n n C36 H37 A1ICX sing 79 n n C35 H36 A1ICX sing 80 n n C41 H41 A1ICX sing 81 n n C41 H42 A1ICX sing 82 n n C44 H44 A1ICX sing 83 n n C44 H45 A1ICX sing 84 n n C45 H47 A1ICX sing 85 n n C45 H46 A1ICX sing 86 n n O42 H49 A1ICX sing 87 n n C48 H48 A1ICX sing 88 n n C26 H26 A1ICX sing 89 n n C22 H22 A1ICX sing 90 n n C23 H23 A1ICX sing 91 n n C08 H09 A1ICX sing 92 n n # _atom_sites.entry_id 9FIU _atom_sites.fract_transf_matrix[1][1] 0.013355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000518 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1ICX A 1 601 1 A1ICX UEX . D 2 A1ICX B 1 601 1 A1ICX UEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1ICX . . . C 2 164.348 2.115 175.419 1 122.01 ? C10 A1ICX 601 A 1 HETATM 2 C C15 A1ICX . . . C 2 169.466 3.105 173.275 1 124.66 ? C15 A1ICX 601 A 1 HETATM 3 C C17 A1ICX . . . C 2 170.151 4.813 171.818 1 135.87 ? C17 A1ICX 601 A 1 HETATM 4 C C20 A1ICX . . . C 2 174.011 6.025 168.396 1 98.97 ? C20 A1ICX 601 A 1 HETATM 5 C C21 A1ICX . . . C 2 174.715 7.017 167.73 1 92.94 ? C21 A1ICX 601 A 1 HETATM 6 C C24 A1ICX . . . C 2 171.913 7.086 167.818 1 100.73 ? C24 A1ICX 601 A 1 HETATM 7 C C28 A1ICX . . . C 2 171.992 3.584 164.663 1 112.47 ? C28 A1ICX 601 A 1 HETATM 8 C C01 A1ICX . . . C 2 171.26 2.57 169.265 1 123.02 ? C01 A1ICX 601 A 1 HETATM 9 C C02 A1ICX . . . C 2 171.264 2.79 170.788 1 138.65 ? C02 A1ICX 601 A 1 HETATM 10 C C05 A1ICX . . . C 2 166.691 3.186 176.993 1 114.29 ? C05 A1ICX 601 A 1 HETATM 11 C C07 A1ICX . . . C 2 164.901 2.963 172.787 1 130.98 ? C07 A1ICX 601 A 1 HETATM 12 C C11 A1ICX . . . C 2 165.656 2.4 175.005 1 129.33 ? C11 A1ICX 601 A 1 HETATM 13 C C14 A1ICX . . . C 2 168.35 2.54 173.77 1 126.06 ? C14 A1ICX 601 A 1 HETATM 14 C C16 A1ICX . . . C 2 169.214 4.092 172.406 1 127.76 ? C16 A1ICX 601 A 1 HETATM 15 C C19 A1ICX . . . C 2 172.227 5.021 170.509 1 116.87 ? C19 A1ICX 601 A 1 HETATM 16 C C25 A1ICX . . . C 2 172.615 6.055 168.434 1 104.14 ? C25 A1ICX 601 A 1 HETATM 17 C C29 A1ICX . . . C 2 172.895 4.577 163.926 1 111.96 ? C29 A1ICX 601 A 1 HETATM 18 C C30 A1ICX . . . C 2 176.804 3.246 162.181 1 113.67 ? C30 A1ICX 601 A 1 HETATM 19 C C33 A1ICX . . . C 2 181.224 1.914 162.351 1 128.14 ? C33 A1ICX 601 A 1 HETATM 20 N N09 A1ICX . . . C 2 163.297 2.253 174.522 1 118.54 ? N09 A1ICX 601 A 1 HETATM 21 O O38 A1ICX . . . C 2 177.396 5.791 164.456 1 109.99 ? O38 A1ICX 601 A 1 HETATM 22 C C39 A1ICX . . . C 2 177.598 4.83 163.724 1 110.33 ? C39 A1ICX 601 A 1 HETATM 23 C C37 A1ICX . . . C 2 178.816 4.287 163.632 1 122.03 ? C37 A1ICX 601 A 1 HETATM 24 C C36 A1ICX . . . C 2 179.933 4.621 164.245 1 125.7 ? C36 A1ICX 601 A 1 HETATM 25 C C35 A1ICX . . . C 2 180.889 3.8 163.837 1 139.85 ? C35 A1ICX 601 A 1 HETATM 26 N N34 A1ICX . . . C 2 180.37 2.949 162.966 1 128.39 ? N34 A1ICX 601 A 1 HETATM 27 C C32 A1ICX . . . C 2 179.079 3.24 162.838 1 123.78 ? C32 A1ICX 601 A 1 HETATM 28 N N31 A1ICX . . . C 2 178.095 2.692 162.105 1 120.36 ? N31 A1ICX 601 A 1 HETATM 29 N N40 A1ICX . . . C 2 176.578 4.341 163.024 1 103.18 ? N40 A1ICX 601 A 1 HETATM 30 C C41 A1ICX . . . C 2 175.241 4.944 163.135 1 100.66 ? C41 A1ICX 601 A 1 HETATM 31 C C43 A1ICX . . . C 2 174.349 4.065 163.984 1 101.31 ? C43 A1ICX 601 A 1 HETATM 32 C C44 A1ICX . . . C 2 174.805 4.084 165.436 1 101.91 ? C44 A1ICX 601 A 1 HETATM 33 C C45 A1ICX . . . C 2 173.92 3.128 166.272 1 102.37 ? C45 A1ICX 601 A 1 HETATM 34 O O42 A1ICX . . . C 2 174.435 2.741 163.447 1 88.43 ? O42 A1ICX 601 A 1 HETATM 35 N N46 A1ICX . . . C 2 172.476 3.442 166.063 1 105.05 ? N46 A1ICX 601 A 1 HETATM 36 C C47 A1ICX . . . C 2 171.574 3.668 167.032 1 106.91 ? C47 A1ICX 601 A 1 HETATM 37 O O27 A1ICX . . . C 2 170.394 3.942 166.773 1 83.05 ? O27 A1ICX 601 A 1 HETATM 38 C C48 A1ICX . . . C 2 172.069 3.632 168.5 1 109.23 ? C48 A1ICX 601 A 1 HETATM 39 C C26 A1ICX . . . C 2 171.886 5.055 169.093 1 106.19 ? C26 A1ICX 601 A 1 HETATM 40 C C22 A1ICX . . . C 2 174.01 8.033 167.117 1 104.22 ? C22 A1ICX 601 A 1 HETATM 41 C C23 A1ICX . . . C 2 172.615 8.069 167.154 1 107.53 ? C23 A1ICX 601 A 1 HETATM 42 N N18 A1ICX . . . C 2 171.167 4.225 171.132 1 137.29 ? N18 A1ICX 601 A 1 HETATM 43 O O03 A1ICX . . . C 2 170.097 6.029 172.031 1 140.9 ? O03 A1ICX 601 A 1 HETATM 44 S S04 A1ICX . . . C 2 167.629 4.354 172.243 1 127.75 ? S04 A1ICX 601 A 1 HETATM 45 C C13 A1ICX . . . C 2 167.22 3.102 173.309 1 130.8 ? C13 A1ICX 601 A 1 HETATM 46 C C12 A1ICX . . . C 2 165.962 2.792 173.678 1 131.77 ? C12 A1ICX 601 A 1 HETATM 47 C C08 A1ICX . . . C 2 163.593 2.68 173.204 1 136.65 ? C08 A1ICX 601 A 1 HETATM 48 O O06 A1ICX . . . C 2 166.691 2.258 175.9 1 126.06 ? O06 A1ICX 601 A 1 HETATM 49 H H10 A1ICX . . . C 2 164.157 1.788 176.439 1 123.12 ? H10 A1ICX 601 A 1 HETATM 50 H H15 A1ICX . . . C 2 170.47 2.767 173.52 1 126.19 ? H15 A1ICX 601 A 1 HETATM 51 H H20 A1ICX . . . C 2 174.554 5.214 168.881 1 99.14 ? H20 A1ICX 601 A 1 HETATM 52 H H21 A1ICX . . . C 2 175.8 7.007 167.692 1 97.32 ? H21 A1ICX 601 A 1 HETATM 53 H H24 A1ICX . . . C 2 170.829 7.11 167.84 1 103.11 ? H24 A1ICX 601 A 1 HETATM 54 H H28 A1ICX . . . C 2 172.026 2.613 164.169 1 110.42 ? H28 A1ICX 601 A 1 HETATM 55 H H29 A1ICX . . . C 2 170.971 3.959 164.628 1 110.39 ? H29 A1ICX 601 A 1 HETATM 56 H H01 A1ICX . . . C 2 171.7 1.594 169.06 1 122.95 ? H01 A1ICX 601 A 1 HETATM 57 H H02 A1ICX . . . C 2 170.229 2.559 168.921 1 122.61 ? H02 A1ICX 601 A 1 HETATM 58 H H03 A1ICX . . . C 2 172.176 2.373 171.215 1 134.81 ? H03 A1ICX 601 A 1 HETATM 59 H H04 A1ICX . . . C 2 170.409 2.265 171.179 1 134.67 ? H04 A1ICX 601 A 1 HETATM 60 H H07 A1ICX . . . C 2 167.717 3.492 177.199 1 117.84 ? H07 A1ICX 601 A 1 HETATM 61 H H05 A1ICX . . . C 2 166.285 2.699 177.876 1 118.16 ? H05 A1ICX 601 A 1 HETATM 62 H H06 A1ICX . . . C 2 166.104 4.066 176.735 1 118.17 ? H06 A1ICX 601 A 1 HETATM 63 H H08 A1ICX . . . C 2 165.08 3.282 171.761 1 132.19 ? H08 A1ICX 601 A 1 HETATM 64 H H14 A1ICX . . . C 2 168.383 1.712 174.477 1 126.81 ? H14 A1ICX 601 A 1 HETATM 65 H H2A A1ICX . . . C 2 172.262 6.029 170.923 1 118.63 ? H2A A1ICX 601 A 1 HETATM 66 H H19 A1ICX . . . C 2 173.187 4.527 170.656 1 118.38 ? H19 A1ICX 601 A 1 HETATM 67 H H3A A1ICX . . . C 2 172.575 4.653 162.887 1 109.33 ? H3A A1ICX 601 A 1 HETATM 68 H H3B A1ICX . . . C 2 172.83 5.555 164.402 1 109.62 ? H3B A1ICX 601 A 1 HETATM 69 H H30 A1ICX . . . C 2 175.995 2.832 161.595 1 112.28 ? H30 A1ICX 601 A 1 HETATM 70 H H35 A1ICX . . . C 2 180.624 1.001 162.158 0 111.77 ? H35 A1ICX 601 A 1 HETATM 71 H H33 A1ICX . . . C 2 182.009 1.638 163.077 0 111.77 ? H33 A1ICX 601 A 1 HETATM 72 H H34 A1ICX . . . C 2 181.664 2.258 161.445 0 111.77 ? H34 A1ICX 601 A 1 HETATM 73 H H37 A1ICX . . . C 2 180.047 5.44 164.946 1 127.65 ? H37 A1ICX 601 A 1 HETATM 74 H H36 A1ICX . . . C 2 181.93 3.831 164.16 1 133.57 ? H36 A1ICX 601 A 1 HETATM 75 H H41 A1ICX . . . C 2 174.79 5.034 162.147 1 101.43 ? H41 A1ICX 601 A 1 HETATM 76 H H42 A1ICX . . . C 2 175.28 5.938 163.579 1 101.47 ? H42 A1ICX 601 A 1 HETATM 77 H H44 A1ICX . . . C 2 174.716 5.095 165.82 1 101.83 ? H44 A1ICX 601 A 1 HETATM 78 H H45 A1ICX . . . C 2 175.839 3.756 165.514 1 101.97 ? H45 A1ICX 601 A 1 HETATM 79 H H47 A1ICX . . . C 2 174.221 3.232 167.304 1 102.93 ? H47 A1ICX 601 A 1 HETATM 80 H H46 A1ICX . . . C 2 174.107 2.101 165.958 1 102.79 ? H46 A1ICX 601 A 1 HETATM 81 H H49 A1ICX . . . C 2 175.371 2.416 163.474 0 91.32 ? H49 A1ICX 601 A 1 HETATM 82 H H48 A1ICX . . . C 2 173.109 3.358 168.583 1 110.46 ? H48 A1ICX 601 A 1 HETATM 83 H H26 A1ICX . . . C 2 170.832 5.306 169.026 1 108.26 ? H26 A1ICX 601 A 1 HETATM 84 H H22 A1ICX . . . C 2 174.549 8.822 166.597 1 102.51 ? H22 A1ICX 601 A 1 HETATM 85 H H23 A1ICX . . . C 2 172.08 8.883 166.664 1 105.15 ? H23 A1ICX 601 A 1 HETATM 86 H H09 A1ICX . . . C 2 162.778 2.788 172.489 1 131.25 ? H09 A1ICX 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 86 #