data_9FIU
#
_model_server_result.job_id            ItFGSkUnUgJT-Oebj0MC7w 
_model_server_result.datetime_utc      '2024-11-07 06:34:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fiu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    9FIU 
#
_exptl.entry_id    9FIU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              666.789 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[[1-[(3~{R},4~{R})-1-[5-(3-methoxypyridin-4-yl)thiophen-2-yl]carbonyl-3-phenyl-piperidin-4-yl]carbonyl-4-oxidanyl-piperidin-4-yl]methyl]-7-methyl-pyrrolo[2,3-d]pyrimidin-4-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.22 
_cell.angle_gamma         90 
_cell.entry_id            9FIU 
_cell.length_a            74.88 
_cell.length_b            68.23 
_cell.length_c            76.88 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FIU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C36 H38 N6 O5 S' 
_chem_comp.formula_weight    666.789 
_chem_comp.id                A1ICX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[[1-[(3~{R},4~{R})-1-[5-(3-methoxypyridin-4-yl)thiophen-2-yl]carbonyl-3-phenyl-piperidin-4-yl]carbonyl-4-oxidanyl-piperidin-4-yl]methyl]-7-methyl-pyrrolo[2,3-d]pyrimidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N31 C30 A1ICX doub 1 n n 
N31 C32 A1ICX sing 2 n n 
C30 N40 A1ICX sing 3 n n 
C33 N34 A1ICX sing 4 n n 
C32 N34 A1ICX sing 5 n y 
C32 C37 A1ICX doub 6 n y 
N34 C35 A1ICX sing 7 n y 
N40 C41 A1ICX sing 8 n n 
N40 C39 A1ICX sing 9 n n 
C41 C43 A1ICX sing 10 n n 
O42 C43 A1ICX sing 11 n n 
C37 C39 A1ICX sing 12 n n 
C37 C36 A1ICX sing 13 n y 
C39 O38 A1ICX doub 14 n n 
C35 C36 A1ICX doub 15 n y 
C29 C43 A1ICX sing 16 n n 
C29 C28 A1ICX sing 17 n n 
C43 C44 A1ICX sing 18 n n 
C28 N46 A1ICX sing 19 n n 
C44 C45 A1ICX sing 20 n n 
N46 C45 A1ICX sing 21 n n 
N46 C47 A1ICX sing 22 n n 
O27 C47 A1ICX doub 23 n n 
C47 C48 A1ICX sing 24 n n 
C22 C23 A1ICX doub 25 n y 
C22 C21 A1ICX sing 26 n y 
C23 C24 A1ICX sing 27 n y 
C21 C20 A1ICX doub 28 n y 
C24 C25 A1ICX doub 29 n y 
C20 C25 A1ICX sing 30 n y 
C25 C26 A1ICX sing 31 n n 
C48 C26 A1ICX sing 32 n n 
C48 C01 A1ICX sing 33 n n 
C26 C19 A1ICX sing 34 n n 
C01 C02 A1ICX sing 35 n n 
C19 N18 A1ICX sing 36 n n 
C02 N18 A1ICX sing 37 n n 
N18 C17 A1ICX sing 38 n n 
C17 O03 A1ICX doub 39 n n 
C17 C16 A1ICX sing 40 n n 
S04 C16 A1ICX sing 41 n y 
S04 C13 A1ICX sing 42 n y 
C16 C15 A1ICX doub 43 n y 
C07 C08 A1ICX doub 44 n y 
C07 C12 A1ICX sing 45 n y 
C08 N09 A1ICX sing 46 n y 
C15 C14 A1ICX sing 47 n y 
C13 C12 A1ICX sing 48 n n 
C13 C14 A1ICX doub 49 n y 
C12 C11 A1ICX doub 50 n y 
N09 C10 A1ICX doub 51 n y 
C11 C10 A1ICX sing 52 n y 
C11 O06 A1ICX sing 53 n n 
O06 C05 A1ICX sing 54 n n 
C10 H10 A1ICX sing 55 n n 
C15 H15 A1ICX sing 56 n n 
C20 H20 A1ICX sing 57 n n 
C21 H21 A1ICX sing 58 n n 
C24 H24 A1ICX sing 59 n n 
C28 H28 A1ICX sing 60 n n 
C28 H29 A1ICX sing 61 n n 
C01 H01 A1ICX sing 62 n n 
C01 H02 A1ICX sing 63 n n 
C02 H03 A1ICX sing 64 n n 
C02 H04 A1ICX sing 65 n n 
C05 H07 A1ICX sing 66 n n 
C05 H05 A1ICX sing 67 n n 
C05 H06 A1ICX sing 68 n n 
C07 H08 A1ICX sing 69 n n 
C14 H14 A1ICX sing 70 n n 
C19 H2A A1ICX sing 71 n n 
C19 H19 A1ICX sing 72 n n 
C29 H3A A1ICX sing 73 n n 
C29 H3B A1ICX sing 74 n n 
C30 H30 A1ICX sing 75 n n 
C33 H35 A1ICX sing 76 n n 
C33 H33 A1ICX sing 77 n n 
C33 H34 A1ICX sing 78 n n 
C36 H37 A1ICX sing 79 n n 
C35 H36 A1ICX sing 80 n n 
C41 H41 A1ICX sing 81 n n 
C41 H42 A1ICX sing 82 n n 
C44 H44 A1ICX sing 83 n n 
C44 H45 A1ICX sing 84 n n 
C45 H47 A1ICX sing 85 n n 
C45 H46 A1ICX sing 86 n n 
O42 H49 A1ICX sing 87 n n 
C48 H48 A1ICX sing 88 n n 
C26 H26 A1ICX sing 89 n n 
C22 H22 A1ICX sing 90 n n 
C23 H23 A1ICX sing 91 n n 
C08 H09 A1ICX sing 92 n n 
#
_atom_sites.entry_id                     9FIU 
_atom_sites.fract_transf_matrix[1][1]    0.013355 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000518 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013017 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1ICX A 1 601 1 A1ICX UEX . 
D 2 A1ICX B 1 601 1 A1ICX UEX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1ICX . . . D 2 159.657 -5.348 173.289 1 124.4 ? C10 A1ICX 601 B 1 
HETATM 2 C C15 A1ICX . . . D 2 154.324 -3.491 174.182 1 107.28 ? C15 A1ICX 601 B 1 
HETATM 3 C C17 A1ICX . . . D 2 153.601 -1.366 175.152 1 105.97 ? C17 A1ICX 601 B 1 
HETATM 4 C C20 A1ICX . . . D 2 149.531 0.582 178.156 1 101.63 ? C20 A1ICX 601 B 1 
HETATM 5 C C21 A1ICX . . . D 2 148.883 1.619 178.81 1 99.01 ? C21 A1ICX 601 B 1 
HETATM 6 C C24 A1ICX . . . D 2 151.566 1.167 179.299 1 102.35 ? C24 A1ICX 601 B 1 
HETATM 7 C C28 A1ICX . . . D 2 151.035 -2.241 182.154 1 100.19 ? C28 A1ICX 601 B 1 
HETATM 8 C C01 A1ICX . . . D 2 151.831 -3.268 177.501 1 111.43 ? C01 A1ICX 601 B 1 
HETATM 9 C C02 A1ICX . . . D 2 151.874 -3.061 175.983 1 105.1 ? C02 A1ICX 601 B 1 
HETATM 10 C C05 A1ICX . . . D 2 157.524 -5.505 171.178 1 157.1 ? C05 A1ICX 601 B 1 
HETATM 11 C C07 A1ICX . . . D 2 158.838 -3.175 174.814 1 122.29 ? C07 A1ICX 601 B 1 
HETATM 12 C C11 A1ICX . . . D 2 158.311 -4.981 173.313 1 126.2 ? C11 A1ICX 601 B 1 
HETATM 13 C C14 A1ICX . . . D 2 155.469 -4.156 173.893 1 102.18 ? C14 A1ICX 601 B 1 
HETATM 14 C C16 A1ICX . . . D 2 154.509 -2.287 174.746 1 110.41 ? C16 A1ICX 601 B 1 
HETATM 15 C C19 A1ICX . . . D 2 151.485 -0.624 176.21 1 104.79 ? C19 A1ICX 601 B 1 
HETATM 16 C C25 A1ICX . . . D 2 150.881 0.351 178.386 1 110.46 ? C25 A1ICX 601 B 1 
HETATM 17 C C29 A1ICX . . . D 2 150.18 -1.292 182.995 1 92.39 ? C29 A1ICX 601 B 1 
HETATM 18 C C30 A1ICX . . . D 2 146.226 -2.42 184.553 1 114.15 ? C30 A1ICX 601 B 1 
HETATM 19 C C33 A1ICX . . . D 2 141.979 -3.939 184.495 1 107.44 ? C33 A1ICX 601 B 1 
HETATM 20 N N09 A1ICX . . . D 2 160.601 -4.625 174.034 1 127.45 ? N09 A1ICX 601 B 1 
HETATM 21 O O38 A1ICX . . . D 2 145.622 0.135 182.315 1 96.45 ? O38 A1ICX 601 B 1 
HETATM 22 C C39 A1ICX . . . D 2 145.425 -0.847 183.025 1 99.34 ? C39 A1ICX 601 B 1 
HETATM 23 C C37 A1ICX . . . D 2 144.208 -1.424 183.123 1 110.11 ? C37 A1ICX 601 B 1 
HETATM 24 C C36 A1ICX . . . D 2 143.05 -1.129 182.546 1 116.49 ? C36 A1ICX 601 B 1 
HETATM 25 C C35 A1ICX . . . D 2 142.123 -1.985 182.98 1 121.64 ? C35 A1ICX 601 B 1 
HETATM 26 N N34 A1ICX . . . D 2 142.685 -2.825 183.835 1 110.13 ? N34 A1ICX 601 B 1 
HETATM 27 C C32 A1ICX . . . D 2 143.967 -2.484 183.918 1 111.19 ? C32 A1ICX 601 B 1 
HETATM 28 N N31 A1ICX . . . D 2 144.951 -3.006 184.645 1 111.47 ? N31 A1ICX 601 B 1 
HETATM 29 N N40 A1ICX . . . D 2 146.451 -1.326 183.727 1 103.4 ? N40 A1ICX 601 B 1 
HETATM 30 C C41 A1ICX . . . D 2 147.82 -0.74 183.663 1 102.14 ? C41 A1ICX 601 B 1 
HETATM 31 C C43 A1ICX . . . D 2 148.725 -1.612 182.776 1 94.39 ? C43 A1ICX 601 B 1 
HETATM 32 C C44 A1ICX . . . D 2 148.357 -1.37 181.331 1 101.39 ? C44 A1ICX 601 B 1 
HETATM 33 C C45 A1ICX . . . D 2 149.148 -2.323 180.439 1 110.15 ? C45 A1ICX 601 B 1 
HETATM 34 O O42 A1ICX . . . D 2 148.566 -2.992 183.077 1 86.42 ? O42 A1ICX 601 B 1 
HETATM 35 N N46 A1ICX . . . D 2 150.614 -2.223 180.718 1 108.93 ? N46 A1ICX 601 B 1 
HETATM 36 C C47 A1ICX . . . D 2 151.563 -2.145 179.748 1 105.38 ? C47 A1ICX 601 B 1 
HETATM 37 O O27 A1ICX . . . D 2 152.761 -2.05 180.001 1 84.36 ? O27 A1ICX 601 B 1 
HETATM 38 C C48 A1ICX . . . D 2 151.128 -2.096 178.258 1 111.68 ? C48 A1ICX 601 B 1 
HETATM 39 C C26 A1ICX . . . D 2 151.564 -0.701 177.729 1 113.61 ? C26 A1ICX 601 B 1 
HETATM 40 C C22 A1ICX . . . D 2 149.576 2.42 179.709 1 103.81 ? C22 A1ICX 601 B 1 
HETATM 41 C C23 A1ICX . . . D 2 150.922 2.194 179.962 1 101.66 ? C23 A1ICX 601 B 1 
HETATM 42 N N18 A1ICX . . . D 2 152.391 -1.691 175.697 1 101.68 ? N18 A1ICX 601 B 1 
HETATM 43 O O03 A1ICX . . . D 2 153.941 -0.182 175.051 1 100.3 ? O03 A1ICX 601 B 1 
HETATM 44 S S04 A1ICX . . . D 2 156.144 -2.043 174.876 1 115.3 ? S04 A1ICX 601 B 1 
HETATM 45 C C13 A1ICX . . . D 2 156.586 -3.477 174.197 1 103.72 ? C13 A1ICX 601 B 1 
HETATM 46 C C12 A1ICX . . . D 2 157.869 -3.881 174.077 1 117.62 ? C12 A1ICX 601 B 1 
HETATM 47 C C08 A1ICX . . . D 2 160.182 -3.53 174.799 1 121.82 ? C08 A1ICX 601 B 1 
HETATM 48 O O06 A1ICX . . . D 2 157.401 -5.7 172.594 1 146.93 ? O06 A1ICX 601 B 1 
HETATM 49 H H10 A1ICX . . . D 2 159.978 -6.196 172.684 1 125.66 ? H10 A1ICX 601 B 1 
HETATM 50 H H15 A1ICX . . . D 2 153.35 -3.915 173.953 1 106.81 ? H15 A1ICX 601 B 1 
HETATM 51 H H20 A1ICX . . . D 2 148.979 -0.037 177.449 1 102.98 ? H20 A1ICX 601 B 1 
HETATM 52 H H21 A1ICX . . . D 2 147.825 1.803 178.622 1 100.72 ? H21 A1ICX 601 B 1 
HETATM 53 H H24 A1ICX . . . D 2 152.616 0.987 179.499 1 104.02 ? H24 A1ICX 601 B 1 
HETATM 54 H H28 A1ICX . . . D 2 150.952 -3.256 182.541 1 100.18 ? H28 A1ICX 601 B 1 
HETATM 55 H H29 A1ICX . . . D 2 152.072 -1.921 182.246 1 100.14 ? H29 A1ICX 601 B 1 
HETATM 56 H H01 A1ICX . . . D 2 151.287 -4.189 177.709 1 110 ? H01 A1ICX 601 B 1 
HETATM 57 H H02 A1ICX . . . D 2 152.853 -3.378 177.859 1 109.77 ? H02 A1ICX 601 B 1 
HETATM 58 H H03 A1ICX . . . D 2 150.865 -3.154 175.582 1 105.67 ? H03 A1ICX 601 B 1 
HETATM 59 H H04 A1ICX . . . D 2 152.489 -3.84 175.573 1 105.76 ? H04 A1ICX 601 B 1 
HETATM 60 H H07 A1ICX . . . D 2 156.955 -6.281 170.663 1 153.91 ? H07 A1ICX 601 B 1 
HETATM 61 H H05 A1ICX . . . D 2 158.567 -5.562 170.863 1 153.5 ? H05 A1ICX 601 B 1 
HETATM 62 H H06 A1ICX . . . D 2 157.113 -4.533 170.915 1 153.91 ? H06 A1ICX 601 B 1 
HETATM 63 H H08 A1ICX . . . D 2 158.553 -2.328 175.433 1 121.14 ? H08 A1ICX 601 B 1 
HETATM 64 H H14 A1ICX . . . D 2 155.45 -5.136 173.431 1 105.61 ? H14 A1ICX 601 B 1 
HETATM 65 H H2A A1ICX . . . D 2 151.788 0.364 175.865 1 105.94 ? H2A A1ICX 601 B 1 
HETATM 66 H H19 A1ICX . . . D 2 150.467 -0.831 175.886 1 106.16 ? H19 A1ICX 601 B 1 
HETATM 67 H H3A A1ICX . . . D 2 150.428 -1.417 184.049 1 94.51 ? H3A A1ICX 601 B 1 
HETATM 68 H H3B A1ICX . . . D 2 150.375 -0.262 182.695 1 94.47 ? H3B A1ICX 601 B 1 
HETATM 69 H H30 A1ICX . . . D 2 147.048 -2.825 185.125 1 110.33 ? H30 A1ICX 601 B 1 
HETATM 70 H H35 A1ICX . . . D 2 142.599 -4.816 184.535 0 108.4 ? H35 A1ICX 601 B 1 
HETATM 71 H H33 A1ICX . . . D 2 141.143 -4.305 183.649 0 108.4 ? H33 A1ICX 601 B 1 
HETATM 72 H H34 A1ICX . . . D 2 141.473 -3.651 185.271 0 108.4 ? H34 A1ICX 601 B 1 
HETATM 73 H H37 A1ICX . . . D 2 142.884 -0.315 181.845 1 115.87 ? H37 A1ICX 601 B 1 
HETATM 74 H H36 A1ICX . . . D 2 141.082 -2.003 182.667 1 117.55 ? H36 A1ICX 601 B 1 
HETATM 75 H H41 A1ICX . . . D 2 148.255 -0.699 184.661 1 100.63 ? H41 A1ICX 601 B 1 
HETATM 76 H H42 A1ICX . . . D 2 147.802 0.271 183.258 1 100.64 ? H42 A1ICX 601 B 1 
HETATM 77 H H44 A1ICX . . . D 2 148.59 -0.339 181.062 1 101.62 ? H44 A1ICX 601 B 1 
HETATM 78 H H45 A1ICX . . . D 2 147.298 -1.557 181.175 1 101.62 ? H45 A1ICX 601 B 1 
HETATM 79 H H47 A1ICX . . . D 2 148.916 -2.049 179.419 1 107.89 ? H47 A1ICX 601 B 1 
HETATM 80 H H46 A1ICX . . . D 2 148.818 -3.347 180.608 1 107.78 ? H46 A1ICX 601 B 1 
HETATM 81 H H49 A1ICX . . . D 2 147.65 -3.258 182.952 0 91.42 ? H49 A1ICX 601 B 1 
HETATM 82 H H48 A1ICX . . . D 2 150.062 -2.208 178.121 1 110.79 ? H48 A1ICX 601 B 1 
HETATM 83 H H26 A1ICX . . . D 2 152.616 -0.585 177.959 1 110.53 ? H26 A1ICX 601 B 1 
HETATM 84 H H22 A1ICX . . . D 2 149.056 3.228 180.223 1 102.18 ? H22 A1ICX 601 B 1 
HETATM 85 H H23 A1ICX . . . D 2 151.465 2.824 180.667 1 102.32 ? H23 A1ICX 601 B 1 
HETATM 86 H H09 A1ICX . . . D 2 160.903 -2.955 175.377 1 123.82 ? H09 A1ICX 601 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           86 
#