data_9FKA
#
_model_server_result.job_id            EhBALHzKGt-hXEbFkxkeHg 
_model_server_result.datetime_utc      '2025-03-06 09:41:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    9FKA 
#
_exptl.entry_id    9FKA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              734.039 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9FKA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 G FE HDD . A HDD 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc2 A OE1 GLU 396 A GLU 396 1_555 E FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
#
_chem_comp.formula           'C40 H80 N O8 P' 
_chem_comp.formula_weight    734.039 
_chem_comp.id                PTY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 PTY sing 1044 n n 
C1 C6 PTY sing 1045 n n 
C1 HC11 PTY sing 1046 n n 
C1 HC12 PTY sing 1047 n n 
C2 C3 PTY sing 1048 n n 
C2 N1 PTY sing 1049 n n 
C2 HC21 PTY sing 1050 n n 
C2 HC22 PTY sing 1051 n n 
C3 O11 PTY sing 1052 n n 
C3 HC31 PTY sing 1053 n n 
C3 HC32 PTY sing 1054 n n 
O4 C30 PTY sing 1055 n n 
C5 C6 PTY sing 1056 n n 
C5 O14 PTY sing 1057 n n 
C5 HC51 PTY sing 1058 n n 
C5 HC52 PTY sing 1059 n n 
C6 O7 PTY sing 1060 n n 
C6 HC6 PTY sing 1061 n n 
O7 C8 PTY sing 1062 n n 
C8 O10 PTY doub 1063 n n 
C8 C11 PTY sing 1064 n n 
C11 C12 PTY sing 1065 n n 
C11 H111 PTY sing 1066 n n 
C11 H112 PTY sing 1067 n n 
C12 C13 PTY sing 1068 n n 
C12 H121 PTY sing 1069 n n 
C12 H122 PTY sing 1070 n n 
C13 C14 PTY sing 1071 n n 
C13 H131 PTY sing 1072 n n 
C13 H132 PTY sing 1073 n n 
C14 C15 PTY sing 1074 n n 
C14 H141 PTY sing 1075 n n 
C14 H142 PTY sing 1076 n n 
C15 C16 PTY sing 1077 n n 
C15 H151 PTY sing 1078 n n 
C15 H152 PTY sing 1079 n n 
C16 C17 PTY sing 1080 n n 
C16 H161 PTY sing 1081 n n 
C16 H162 PTY sing 1082 n n 
C17 C18 PTY sing 1083 n n 
C17 H171 PTY sing 1084 n n 
C17 H172 PTY sing 1085 n n 
C18 C19 PTY sing 1086 n n 
C18 H181 PTY sing 1087 n n 
C18 H182 PTY sing 1088 n n 
C19 C20 PTY sing 1089 n n 
C19 H191 PTY sing 1090 n n 
C19 H192 PTY sing 1091 n n 
C20 C21 PTY sing 1092 n n 
C20 H201 PTY sing 1093 n n 
C20 H202 PTY sing 1094 n n 
C21 C22 PTY sing 1095 n n 
C21 H211 PTY sing 1096 n n 
C21 H212 PTY sing 1097 n n 
C22 C23 PTY sing 1098 n n 
C22 H221 PTY sing 1099 n n 
C22 H222 PTY sing 1100 n n 
C23 C24 PTY sing 1101 n n 
C23 H231 PTY sing 1102 n n 
C23 H232 PTY sing 1103 n n 
C24 C25 PTY sing 1104 n n 
C24 H241 PTY sing 1105 n n 
C24 H242 PTY sing 1106 n n 
C25 C26 PTY sing 1107 n n 
C25 H251 PTY sing 1108 n n 
C25 H252 PTY sing 1109 n n 
C26 C27 PTY sing 1110 n n 
C26 H261 PTY sing 1111 n n 
C26 H262 PTY sing 1112 n n 
C27 C28 PTY sing 1113 n n 
C27 H271 PTY sing 1114 n n 
C27 H272 PTY sing 1115 n n 
C28 C29 PTY sing 1116 n n 
C28 H281 PTY sing 1117 n n 
C28 H282 PTY sing 1118 n n 
C29 H291 PTY sing 1119 n n 
C29 H292 PTY sing 1120 n n 
C29 H293 PTY sing 1121 n n 
C30 C31 PTY sing 1122 n n 
C30 O30 PTY doub 1123 n n 
C31 C32 PTY sing 1124 n n 
C31 H311 PTY sing 1125 n n 
C31 H312 PTY sing 1126 n n 
C32 C33 PTY sing 1127 n n 
C32 H321 PTY sing 1128 n n 
C32 H322 PTY sing 1129 n n 
C33 C34 PTY sing 1130 n n 
C33 H331 PTY sing 1131 n n 
C33 H332 PTY sing 1132 n n 
C34 C35 PTY sing 1133 n n 
C34 H341 PTY sing 1134 n n 
C34 H342 PTY sing 1135 n n 
C35 C36 PTY sing 1136 n n 
C35 H351 PTY sing 1137 n n 
C35 H352 PTY sing 1138 n n 
C36 C37 PTY sing 1139 n n 
C36 H361 PTY sing 1140 n n 
C36 H362 PTY sing 1141 n n 
C37 C38 PTY sing 1142 n n 
C37 H371 PTY sing 1143 n n 
C37 H372 PTY sing 1144 n n 
C38 C39 PTY sing 1145 n n 
C38 H381 PTY sing 1146 n n 
C38 H382 PTY sing 1147 n n 
C39 C40 PTY sing 1148 n n 
C39 H391 PTY sing 1149 n n 
C39 H392 PTY sing 1150 n n 
C40 C41 PTY sing 1151 n n 
C40 H401 PTY sing 1152 n n 
C40 H402 PTY sing 1153 n n 
C41 C42 PTY sing 1154 n n 
C41 H411 PTY sing 1155 n n 
C41 H412 PTY sing 1156 n n 
C42 C43 PTY sing 1157 n n 
C42 H421 PTY sing 1158 n n 
C42 H422 PTY sing 1159 n n 
C43 C44 PTY sing 1160 n n 
C43 H431 PTY sing 1161 n n 
C43 H432 PTY sing 1162 n n 
C44 H441 PTY sing 1163 n n 
C44 H442 PTY sing 1164 n n 
C44 H443 PTY sing 1165 n n 
P1 O11 PTY sing 1166 n n 
P1 O12 PTY sing 1167 n n 
P1 O13 PTY doub 1168 n n 
P1 O14 PTY sing 1169 n n 
O12 H12O PTY sing 1170 n n 
N1 HN11 PTY sing 1171 n n 
N1 HN12 PTY sing 1172 n n 
#
_atom_sites.entry_id                     9FKA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PTY A 1 501 501 PTY PTY . 
D 4 MQ9 A 1 502 502 MQ9 MQ9 . 
E 5 HEM A 1 503 601 HEM HEM . 
F 5 HEM A 1 504 701 HEM HEM . 
G 6 HDD A 1 505 801 HDD HDD . 
H 7 CDL B 1 401 401 CDL CDL . 
I 8 CD4 B 1 402 402 CD4 CD4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTY . . . C 3 126.99 121.908 125.403 1 118.27 ? C1 PTY 501 A 1 
HETATM 2 C C2 PTY . . . C 3 134.974 122.622 123.419 1 140.58 ? C2 PTY 501 A 1 
HETATM 3 C C3 PTY . . . C 3 133.729 121.901 122.903 1 152.16 ? C3 PTY 501 A 1 
HETATM 4 O O4 PTY . . . C 3 126.906 122.472 124.121 1 119.31 ? O4 PTY 501 A 1 
HETATM 5 C C5 PTY . . . C 3 129.277 120.916 125.287 1 133.46 ? C5 PTY 501 A 1 
HETATM 6 C C6 PTY . . . C 3 128.42 122.02 125.91 1 127 ? C6 PTY 501 A 1 
HETATM 7 O O7 PTY . . . C 3 128.428 121.886 127.314 1 126.34 ? O7 PTY 501 A 1 
HETATM 8 C C8 PTY . . . C 3 129.368 122.731 127.987 1 127.77 ? C8 PTY 501 A 1 
HETATM 9 O O10 PTY . . . C 3 130.245 122.248 128.627 1 121.58 ? O10 PTY 501 A 1 
HETATM 10 C C11 PTY . . . C 3 129.239 124.289 127.888 1 134.93 ? C11 PTY 501 A 1 
HETATM 11 C C12 PTY . . . C 3 127.735 124.692 127.967 1 126.01 ? C12 PTY 501 A 1 
HETATM 12 C C13 PTY . . . C 3 127.287 125.395 126.644 1 118.36 ? C13 PTY 501 A 1 
HETATM 13 C C14 PTY . . . C 3 127.968 126.788 126.453 1 120.76 ? C14 PTY 501 A 1 
HETATM 14 C C15 PTY . . . C 3 127.765 127.728 127.68 1 124.55 ? C15 PTY 501 A 1 
HETATM 15 C C16 PTY . . . C 3 126.262 127.725 128.138 1 126.56 ? C16 PTY 501 A 1 
HETATM 16 C C17 PTY . . . C 3 125.871 129.127 128.707 1 130.65 ? C17 PTY 501 A 1 
HETATM 17 C C18 PTY . . . C 3 124.866 128.984 129.894 1 136.84 ? C18 PTY 501 A 1 
HETATM 18 C C19 PTY . . . C 3 123.637 128.096 129.535 1 139.43 ? C19 PTY 501 A 1 
HETATM 19 C C20 PTY . . . C 3 122.712 128.8 128.489 1 142.85 ? C20 PTY 501 A 1 
HETATM 20 C C21 PTY . . . C 3 121.88 129.914 129.181 1 145.69 ? C21 PTY 501 A 1 
HETATM 21 C C22 PTY . . . C 3 122.284 131.3 128.609 1 144.24 ? C22 PTY 501 A 1 
HETATM 22 C C23 PTY . . . C 3 121.575 131.516 127.24 1 147.11 ? C23 PTY 501 A 1 
HETATM 23 C C24 PTY . . . C 3 122.35 132.585 126.423 1 145.55 ? C24 PTY 501 A 1 
HETATM 24 C C25 PTY . . . C 3 121.405 133.342 125.463 1 144.54 ? C25 PTY 501 A 1 
HETATM 25 C C26 PTY . . . C 3 121.389 132.687 124.058 1 142.2 ? C26 PTY 501 A 1 
HETATM 26 C C27 PTY . . . C 3 120.352 131.553 123.979 1 141.71 ? C27 PTY 501 A 1 
HETATM 27 C C28 PTY . . . C 3 118.925 132.128 123.971 1 134.25 ? C28 PTY 501 A 1 
HETATM 28 C C29 PTY . . . C 3 117.955 131.07 123.429 1 123.5 ? C29 PTY 501 A 1 
HETATM 29 C C30 PTY . . . C 3 125.69 122.219 123.48 1 118.7 ? C30 PTY 501 A 1 
HETATM 30 C C31 PTY . . . C 3 124.387 122.791 124.06 1 118.07 ? C31 PTY 501 A 1 
HETATM 31 O O30 PTY . . . C 3 125.665 121.568 122.497 1 118.6 ? O30 PTY 501 A 1 
HETATM 32 C C32 PTY . . . C 3 124.498 124.315 124.166 1 118.96 ? C32 PTY 501 A 1 
HETATM 33 C C33 PTY . . . C 3 123.876 124.802 125.495 1 116.92 ? C33 PTY 501 A 1 
HETATM 34 C C34 PTY . . . C 3 122.322 124.695 125.439 1 112.87 ? C34 PTY 501 A 1 
HETATM 35 C C35 PTY . . . C 3 121.849 123.382 126.111 1 104.83 ? C35 PTY 501 A 1 
HETATM 36 C C36 PTY . . . C 3 120.309 123.444 126.348 1 105.92 ? C36 PTY 501 A 1 
HETATM 37 C C37 PTY . . . C 3 119.994 123.087 127.832 1 105.01 ? C37 PTY 501 A 1 
HETATM 38 C C38 PTY . . . C 3 118.524 123.455 128.167 1 110.72 ? C38 PTY 501 A 1 
HETATM 39 C C39 PTY . . . C 3 117.538 122.531 127.383 1 111.26 ? C39 PTY 501 A 1 
HETATM 40 C C40 PTY . . . C 3 116.072 122.944 127.727 1 115.06 ? C40 PTY 501 A 1 
HETATM 41 C C41 PTY . . . C 3 115.079 121.887 127.162 1 117.65 ? C41 PTY 501 A 1 
HETATM 42 C C42 PTY . . . C 3 113.959 122.597 126.375 1 122.82 ? C42 PTY 501 A 1 
HETATM 43 C C43 PTY . . . C 3 112.717 121.699 126.31 1 122.68 ? C43 PTY 501 A 1 
HETATM 44 C C44 PTY . . . C 3 111.637 122.241 127.273 1 120.5 ? C44 PTY 501 A 1 
HETATM 45 P P1 PTY . . . C 3 131.47 120.833 123.798 1 166.85 ? P1 PTY 501 A 1 
HETATM 46 O O11 PTY . . . C 3 133.072 121.249 123.976 1 158.39 ? O11 PTY 501 A 1 
HETATM 47 O O12 PTY . . . C 3 130.928 121.426 122.518 1 148.84 ? O12 PTY 501 A 1 
HETATM 48 O O13 PTY . . . C 3 131.353 119.33 123.735 1 150.72 ? O13 PTY 501 A 1 
HETATM 49 O O14 PTY . . . C 3 130.589 121.402 125.099 1 144.44 ? O14 PTY 501 A 1 
HETATM 50 N N1 PTY . . . C 3 135.903 122.834 122.317 1 134.55 ? N1 PTY 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           50 
#