data_9FKA
#
_model_server_result.job_id            wKoWec5J6j6vtEbY1juJrQ 
_model_server_result.datetime_utc      '2025-03-06 09:30:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    9FKA 
#
_exptl.entry_id    9FKA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9FKA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 G FE HDD . A HDD 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc2 A OE1 GLU 396 A GLU 396 1_555 E FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 677 n n 
CHA C4D HEM doub 678 n n 
CHA HHA HEM sing 679 n n 
CHB C4A HEM sing 680 n n 
CHB C1B HEM doub 681 n n 
CHB HHB HEM sing 682 n n 
CHC C4B HEM sing 683 n n 
CHC C1C HEM doub 684 n n 
CHC HHC HEM sing 685 n n 
CHD C4C HEM doub 686 n n 
CHD C1D HEM sing 687 n n 
CHD HHD HEM sing 688 n n 
C1A C2A HEM doub 689 n y 
C1A NA HEM sing 690 n y 
C2A C3A HEM sing 691 n y 
C2A CAA HEM sing 692 n n 
C3A C4A HEM doub 693 n y 
C3A CMA HEM sing 694 n n 
C4A NA HEM sing 695 n y 
CMA HMA HEM sing 696 n n 
CMA HMAA HEM sing 697 n n 
CMA HMAB HEM sing 698 n n 
CAA CBA HEM sing 699 n n 
CAA HAA HEM sing 700 n n 
CAA HAAA HEM sing 701 n n 
CBA CGA HEM sing 702 n n 
CBA HBA HEM sing 703 n n 
CBA HBAA HEM sing 704 n n 
CGA O1A HEM doub 705 n n 
CGA O2A HEM sing 706 n n 
C1B C2B HEM sing 707 n n 
C1B NB HEM sing 708 n n 
C2B C3B HEM doub 709 n n 
C2B CMB HEM sing 710 n n 
C3B C4B HEM sing 711 n n 
C3B CAB HEM sing 712 n n 
C4B NB HEM doub 713 n n 
CMB HMB HEM sing 714 n n 
CMB HMBA HEM sing 715 n n 
CMB HMBB HEM sing 716 n n 
CAB CBB HEM doub 717 n n 
CAB HAB HEM sing 718 n n 
CBB HBB HEM sing 719 n n 
CBB HBBA HEM sing 720 n n 
C1C C2C HEM sing 721 n y 
C1C NC HEM sing 722 n y 
C2C C3C HEM doub 723 n y 
C2C CMC HEM sing 724 n n 
C3C C4C HEM sing 725 n y 
C3C CAC HEM sing 726 n n 
C4C NC HEM sing 727 n y 
CMC HMC HEM sing 728 n n 
CMC HMCA HEM sing 729 n n 
CMC HMCB HEM sing 730 n n 
CAC CBC HEM doub 731 n n 
CAC HAC HEM sing 732 n n 
CBC HBC HEM sing 733 n n 
CBC HBCA HEM sing 734 n n 
C1D C2D HEM sing 735 n n 
C1D ND HEM doub 736 n n 
C2D C3D HEM doub 737 n n 
C2D CMD HEM sing 738 n n 
C3D C4D HEM sing 739 n n 
C3D CAD HEM sing 740 n n 
C4D ND HEM sing 741 n n 
CMD HMD HEM sing 742 n n 
CMD HMDA HEM sing 743 n n 
CMD HMDB HEM sing 744 n n 
CAD CBD HEM sing 745 n n 
CAD HAD HEM sing 746 n n 
CAD HADA HEM sing 747 n n 
CBD CGD HEM sing 748 n n 
CBD HBD HEM sing 749 n n 
CBD HBDA HEM sing 750 n n 
CGD O1D HEM doub 751 n n 
CGD O2D HEM sing 752 n n 
O2A H2A HEM sing 753 n n 
O2D H2D HEM sing 754 n n 
FE NA HEM sing 755 n n 
FE NB HEM sing 756 n n 
FE NC HEM sing 757 n n 
FE ND HEM sing 758 n n 
#
_atom_sites.entry_id                     9FKA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PTY A 1 501 501 PTY PTY . 
D 4 MQ9 A 1 502 502 MQ9 MQ9 . 
E 5 HEM A 1 503 601 HEM HEM . 
F 5 HEM A 1 504 701 HEM HEM . 
G 6 HDD A 1 505 801 HDD HDD . 
H 7 CDL B 1 401 401 CDL CDL . 
I 8 CD4 B 1 402 402 CD4 CD4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . E 5 121.623 112.865 118.339 1 83.69 ? CHA HEM 503 A 1 
HETATM 2 C CHB HEM . . . E 5 121.324 108.779 116.164 1 77.52 ? CHB HEM 503 A 1 
HETATM 3 C CHC HEM . . . E 5 117.304 107.966 118.433 1 73.86 ? CHC HEM 503 A 1 
HETATM 4 C CHD HEM . . . E 5 117.645 112.143 120.566 1 72.4 ? CHD HEM 503 A 1 
HETATM 5 C C1A HEM . . . E 5 121.822 111.868 117.488 1 80.64 ? C1A HEM 503 A 1 
HETATM 6 C C2A HEM . . . E 5 122.68 111.914 116.42 1 75.87 ? C2A HEM 503 A 1 
HETATM 7 C C3A HEM . . . E 5 122.578 110.777 115.821 1 77.26 ? C3A HEM 503 A 1 
HETATM 8 C C4A HEM . . . E 5 121.691 110.009 116.516 1 77.76 ? C4A HEM 503 A 1 
HETATM 9 C CMA HEM . . . E 5 123.32 110.398 114.625 1 80.92 ? CMA HEM 503 A 1 
HETATM 10 C CAA HEM . . . E 5 123.525 112.991 115.938 1 73.92 ? CAA HEM 503 A 1 
HETATM 11 C CBA HEM . . . E 5 124.819 112.971 116.633 1 80.16 ? CBA HEM 503 A 1 
HETATM 12 C CGA HEM . . . E 5 124.646 113.695 117.89 1 86.54 ? CGA HEM 503 A 1 
HETATM 13 O O1A HEM . . . E 5 123.747 114.491 118.075 1 89.14 ? O1A HEM 503 A 1 
HETATM 14 O O2A HEM . . . E 5 125.426 113.515 118.812 1 92.82 ? O2A HEM 503 A 1 
HETATM 15 C C1B HEM . . . E 5 120.192 108.255 116.651 1 76.56 ? C1B HEM 503 A 1 
HETATM 16 C C2B HEM . . . E 5 119.75 107.062 116.15 1 73.21 ? C2B HEM 503 A 1 
HETATM 17 C C3B HEM . . . E 5 118.64 106.844 116.777 1 66.75 ? C3B HEM 503 A 1 
HETATM 18 C C4B HEM . . . E 5 118.42 107.917 117.675 1 72.54 ? C4B HEM 503 A 1 
HETATM 19 C CMB HEM . . . E 5 120.417 106.248 115.121 1 79.04 ? CMB HEM 503 A 1 
HETATM 20 C CAB HEM . . . E 5 117.748 105.769 116.722 1 73.59 ? CAB HEM 503 A 1 
HETATM 21 C CBB HEM . . . E 5 117.982 104.669 116.066 1 86.62 ? CBB HEM 503 A 1 
HETATM 22 C C1C HEM . . . E 5 116.981 109.044 119.163 1 68.23 ? C1C HEM 503 A 1 
HETATM 23 C C2C HEM . . . E 5 115.784 109.309 119.708 1 66.3 ? C2C HEM 503 A 1 
HETATM 24 C C3C HEM . . . E 5 115.922 110.506 120.309 1 67.6 ? C3C HEM 503 A 1 
HETATM 25 C C4C HEM . . . E 5 117.154 110.973 120.096 1 69.3 ? C4C HEM 503 A 1 
HETATM 26 C CMC HEM . . . E 5 114.644 108.389 119.571 1 68.02 ? CMC HEM 503 A 1 
HETATM 27 C CAC HEM . . . E 5 115.066 111.332 121.059 1 77.32 ? CAC HEM 503 A 1 
HETATM 28 C CBC HEM . . . E 5 113.928 110.86 121.43 1 89.37 ? CBC HEM 503 A 1 
HETATM 29 C C1D HEM . . . E 5 118.796 112.644 120.102 1 72.95 ? C1D HEM 503 A 1 
HETATM 30 C C2D HEM . . . E 5 119.295 113.883 120.5 1 69.78 ? C2D HEM 503 A 1 
HETATM 31 C C3D HEM . . . E 5 120.348 114.105 119.839 1 70.03 ? C3D HEM 503 A 1 
HETATM 32 C C4D HEM . . . E 5 120.555 112.931 119.121 1 77.86 ? C4D HEM 503 A 1 
HETATM 33 C CMD HEM . . . E 5 118.618 114.808 121.377 1 77.68 ? CMD HEM 503 A 1 
HETATM 34 C CAD HEM . . . E 5 121.235 115.252 119.899 1 80.8 ? CAD HEM 503 A 1 
HETATM 35 C CBD HEM . . . E 5 122.215 114.739 120.899 1 80.15 ? CBD HEM 503 A 1 
HETATM 36 C CGD HEM . . . E 5 123.583 115.242 120.665 1 90.82 ? CGD HEM 503 A 1 
HETATM 37 O O1D HEM . . . E 5 123.693 116.318 120.171 1 98.22 ? O1D HEM 503 A 1 
HETATM 38 O O2D HEM . . . E 5 124.627 114.646 120.955 1 91.13 ? O2D HEM 503 A 1 
HETATM 39 N NA HEM . . . E 5 121.215 110.686 117.552 1 80.28 ? NA HEM 503 A 1 
HETATM 40 N NB HEM . . . E 5 119.392 108.721 117.539 1 77.57 ? NB HEM 503 A 1 
HETATM 41 N NC HEM . . . E 5 117.757 110.055 119.367 1 68.61 ? NC HEM 503 A 1 
HETATM 42 N ND HEM . . . E 5 119.622 112.085 119.312 1 79.87 ? ND HEM 503 A 1 
HETATM 43 FE FE HEM . . . E 5 119.574 110.452 118.555 1 105.42 ? FE HEM 503 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#