data_9FKD # _model_server_result.job_id kT0SnfMZh4kXk6eTI4cFFQ _model_server_result.datetime_utc '2025-06-18 13:36:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fkd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 9FKD # _exptl.entry_id 9FKD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 314.462 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FKD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 149 H CYS 149 1_555 B SG CYS 205 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 225 H CYS 225 1_555 C SG CYS 222 L CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 26 L CYS 26 1_555 C SG CYS 96 L CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 142 L CYS 142 1_555 C SG CYS 202 L CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 D SG CYS 26 K CYS 26 1_555 D SG CYS 91 K CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 D SG CYS 137 K CYS 137 1_555 D SG CYS 197 K CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 D SG CYS 217 K CYS 217 1_555 E SG CYS 223 I CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 E SG CYS 25 I CYS 25 1_555 E SG CYS 99 I CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 E SG CYS 148 I CYS 148 1_555 E SG CYS 203 I CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 288 n n C1 C10 STR sing 289 n n C1 H11 STR sing 290 n n C1 H12 STR sing 291 n n C2 C3 STR sing 292 n n C2 H21 STR sing 293 n n C2 H22 STR sing 294 n n C3 O3 STR doub 295 n n C3 C4 STR sing 296 n n C4 C5 STR doub 297 n n C4 H4 STR sing 298 n n C5 C6 STR sing 299 n n C5 C10 STR sing 300 n n C6 C7 STR sing 301 n n C6 H61 STR sing 302 n n C6 H62 STR sing 303 n n C7 C8 STR sing 304 n n C7 H71 STR sing 305 n n C7 H72 STR sing 306 n n C8 C9 STR sing 307 n n C8 C14 STR sing 308 n n C8 H8 STR sing 309 n n C9 C10 STR sing 310 n n C9 C11 STR sing 311 n n C9 H9 STR sing 312 n n C10 C19 STR sing 313 n n C11 C12 STR sing 314 n n C11 H111 STR sing 315 n n C11 H112 STR sing 316 n n C12 C13 STR sing 317 n n C12 H121 STR sing 318 n n C12 H122 STR sing 319 n n C13 C14 STR sing 320 n n C13 C17 STR sing 321 n n C13 C18 STR sing 322 n n C14 C15 STR sing 323 n n C14 H14 STR sing 324 n n C15 C16 STR sing 325 n n C15 H151 STR sing 326 n n C15 H152 STR sing 327 n n C16 C17 STR sing 328 n n C16 H161 STR sing 329 n n C16 H162 STR sing 330 n n C17 C20 STR sing 331 n n C17 H17 STR sing 332 n n C18 H181 STR sing 333 n n C18 H182 STR sing 334 n n C18 H183 STR sing 335 n n C19 H191 STR sing 336 n n C19 H192 STR sing 337 n n C19 H193 STR sing 338 n n C20 O20 STR doub 339 n n C20 C21 STR sing 340 n n C21 H211 STR sing 341 n n C21 H212 STR sing 342 n n C21 H213 STR sing 343 n n # _atom_sites.entry_id 9FKD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id STR _pdbx_nonpoly_scheme.pdb_strand_id H _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id STR _pdbx_nonpoly_scheme.auth_mon_id STR _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . F 6 112.402 140.177 158.844 1 67.53 ? C1 STR 301 H 1 HETATM 2 C C2 STR . . . F 6 111.099 140.951 158.765 1 67.66 ? C2 STR 301 H 1 HETATM 3 C C3 STR . . . F 6 110.617 141.026 157.348 1 71.86 ? C3 STR 301 H 1 HETATM 4 O O3 STR . . . F 6 110.124 142.033 156.872 1 75.24 ? O3 STR 301 H 1 HETATM 5 C C4 STR . . . F 6 110.784 139.806 156.569 1 66.51 ? C4 STR 301 H 1 HETATM 6 C C5 STR . . . F 6 111.515 138.761 156.982 1 62.81 ? C5 STR 301 H 1 HETATM 7 C C6 STR . . . F 6 111.573 137.52 156.156 1 59.79 ? C6 STR 301 H 1 HETATM 8 C C7 STR . . . F 6 113.006 137.11 155.851 1 62.49 ? C7 STR 301 H 1 HETATM 9 C C8 STR . . . F 6 113.837 136.994 157.118 1 59.61 ? C8 STR 301 H 1 HETATM 10 C C9 STR . . . F 6 113.761 138.288 157.94 1 60.55 ? C9 STR 301 H 1 HETATM 11 C C10 STR . . . F 6 112.318 138.76 158.263 1 63.77 ? C10 STR 301 H 1 HETATM 12 C C11 STR . . . F 6 114.637 138.189 159.187 1 57.57 ? C11 STR 301 H 1 HETATM 13 C C12 STR . . . F 6 116.088 137.853 158.848 1 57.04 ? C12 STR 301 H 1 HETATM 14 C C13 STR . . . F 6 116.196 136.584 158.011 1 51.4 ? C13 STR 301 H 1 HETATM 15 C C14 STR . . . F 6 115.297 136.751 156.783 1 53.07 ? C14 STR 301 H 1 HETATM 16 C C15 STR . . . F 6 115.664 135.572 155.897 1 48.87 ? C15 STR 301 H 1 HETATM 17 C C16 STR . . . F 6 117.184 135.44 156.1 1 49.52 ? C16 STR 301 H 1 HETATM 18 C C17 STR . . . F 6 117.548 136.347 157.29 1 53.61 ? C17 STR 301 H 1 HETATM 19 C C18 STR . . . F 6 115.819 135.36 158.842 1 60.16 ? C18 STR 301 H 1 HETATM 20 C C19 STR . . . F 6 111.621 137.824 159.26 1 61.49 ? C19 STR 301 H 1 HETATM 21 C C20 STR . . . F 6 118.649 135.8 158.162 1 64.95 ? C20 STR 301 H 1 HETATM 22 O O20 STR . . . F 6 118.908 134.619 158.203 1 71.4 ? O20 STR 301 H 1 HETATM 23 C C21 STR . . . F 6 119.426 136.79 158.984 1 64.84 ? C21 STR 301 H 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #