data_9FKE
#
_model_server_result.job_id            ZQWZiJIKIYAVGcdveSQPig 
_model_server_result.datetime_utc      '2025-07-14 19:39:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fke 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    9FKE 
#
_exptl.entry_id    9FKE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9FKE 
_cell.length_a            110.05 
_cell.length_b            110.05 
_cell.length_c            132.17 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FKE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     9FKE 
_atom_sites.fract_transf_matrix[1][1]    0.009087 
_atom_sites.fract_transf_matrix[1][2]    0.005246 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010493 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007566 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SAH A 1 301 301 SAH SAH . 
D 4 HOH A 1 401 93 HOH HOH . 
D 4 HOH A 2 402 110 HOH HOH . 
D 4 HOH A 3 403 118 HOH HOH . 
D 4 HOH A 4 404 87 HOH HOH . 
D 4 HOH A 5 405 95 HOH HOH . 
D 4 HOH A 6 406 36 HOH HOH . 
D 4 HOH A 7 407 55 HOH HOH . 
D 4 HOH A 8 408 68 HOH HOH . 
D 4 HOH A 9 409 92 HOH HOH . 
D 4 HOH A 10 410 94 HOH HOH . 
D 4 HOH A 11 411 41 HOH HOH . 
D 4 HOH A 12 412 89 HOH HOH . 
D 4 HOH A 13 413 32 HOH HOH . 
D 4 HOH A 14 414 76 HOH HOH . 
D 4 HOH A 15 415 61 HOH HOH . 
D 4 HOH A 16 416 33 HOH HOH . 
D 4 HOH A 17 417 8 HOH HOH . 
D 4 HOH A 18 418 47 HOH HOH . 
D 4 HOH A 19 419 24 HOH HOH . 
D 4 HOH A 20 420 123 HOH HOH . 
D 4 HOH A 21 421 13 HOH HOH . 
D 4 HOH A 22 422 30 HOH HOH . 
D 4 HOH A 23 423 2 HOH HOH . 
D 4 HOH A 24 424 83 HOH HOH . 
D 4 HOH A 25 425 70 HOH HOH . 
D 4 HOH A 26 426 63 HOH HOH . 
D 4 HOH A 27 427 81 HOH HOH . 
D 4 HOH A 28 428 16 HOH HOH . 
D 4 HOH A 29 429 6 HOH HOH . 
D 4 HOH A 30 430 49 HOH HOH . 
D 4 HOH A 31 431 58 HOH HOH . 
D 4 HOH A 32 432 91 HOH HOH . 
D 4 HOH A 33 433 98 HOH HOH . 
D 4 HOH A 34 434 7 HOH HOH . 
D 4 HOH A 35 435 28 HOH HOH . 
D 4 HOH A 36 436 44 HOH HOH . 
D 4 HOH A 37 437 39 HOH HOH . 
D 4 HOH A 38 438 112 HOH HOH . 
D 4 HOH A 39 439 104 HOH HOH . 
D 4 HOH A 40 440 21 HOH HOH . 
D 4 HOH A 41 441 90 HOH HOH . 
D 4 HOH A 42 442 3 HOH HOH . 
D 4 HOH A 43 443 82 HOH HOH . 
D 4 HOH A 44 444 127 HOH HOH . 
D 4 HOH A 45 445 124 HOH HOH . 
D 4 HOH A 46 446 10 HOH HOH . 
D 4 HOH A 47 447 22 HOH HOH . 
D 4 HOH A 48 448 84 HOH HOH . 
D 4 HOH A 49 449 9 HOH HOH . 
D 4 HOH A 50 450 31 HOH HOH . 
D 4 HOH A 51 451 17 HOH HOH . 
D 4 HOH A 52 452 29 HOH HOH . 
D 4 HOH A 53 453 52 HOH HOH . 
D 4 HOH A 54 454 27 HOH HOH . 
D 4 HOH A 55 455 75 HOH HOH . 
D 4 HOH A 56 456 73 HOH HOH . 
D 4 HOH A 57 457 54 HOH HOH . 
D 4 HOH A 58 458 42 HOH HOH . 
D 4 HOH A 59 459 72 HOH HOH . 
D 4 HOH A 60 460 12 HOH HOH . 
D 4 HOH A 61 461 34 HOH HOH . 
D 4 HOH A 62 462 114 HOH HOH . 
D 4 HOH A 63 463 48 HOH HOH . 
D 4 HOH A 64 464 106 HOH HOH . 
D 4 HOH A 65 465 129 HOH HOH . 
D 4 HOH A 66 466 60 HOH HOH . 
D 4 HOH A 67 467 108 HOH HOH . 
D 4 HOH A 68 468 35 HOH HOH . 
D 4 HOH A 69 469 103 HOH HOH . 
D 4 HOH A 70 470 38 HOH HOH . 
D 4 HOH A 71 471 126 HOH HOH . 
D 4 HOH A 72 472 96 HOH HOH . 
D 4 HOH A 73 473 100 HOH HOH . 
D 4 HOH A 74 474 99 HOH HOH . 
D 4 HOH A 75 475 120 HOH HOH . 
D 4 HOH A 76 476 113 HOH HOH . 
D 4 HOH A 77 477 71 HOH HOH . 
D 4 HOH A 78 478 116 HOH HOH . 
D 4 HOH A 79 479 86 HOH HOH . 
E 4 HOH B 1 201 20 HOH HOH . 
E 4 HOH B 2 202 51 HOH HOH . 
E 4 HOH B 3 203 66 HOH HOH . 
E 4 HOH B 4 204 107 HOH HOH . 
E 4 HOH B 5 205 15 HOH HOH . 
E 4 HOH B 6 206 88 HOH HOH . 
E 4 HOH B 7 207 57 HOH HOH . 
E 4 HOH B 8 208 5 HOH HOH . 
E 4 HOH B 9 209 37 HOH HOH . 
E 4 HOH B 10 210 1 HOH HOH . 
E 4 HOH B 11 211 115 HOH HOH . 
E 4 HOH B 12 212 40 HOH HOH . 
E 4 HOH B 13 213 18 HOH HOH . 
E 4 HOH B 14 214 4 HOH HOH . 
E 4 HOH B 15 215 125 HOH HOH . 
E 4 HOH B 16 216 80 HOH HOH . 
E 4 HOH B 17 217 119 HOH HOH . 
E 4 HOH B 18 218 65 HOH HOH . 
E 4 HOH B 19 219 14 HOH HOH . 
E 4 HOH B 20 220 121 HOH HOH . 
E 4 HOH B 21 221 19 HOH HOH . 
E 4 HOH B 22 222 11 HOH HOH . 
E 4 HOH B 23 223 43 HOH HOH . 
E 4 HOH B 24 224 46 HOH HOH . 
E 4 HOH B 25 225 69 HOH HOH . 
E 4 HOH B 26 226 78 HOH HOH . 
E 4 HOH B 27 227 26 HOH HOH . 
E 4 HOH B 28 228 117 HOH HOH . 
E 4 HOH B 29 229 23 HOH HOH . 
E 4 HOH B 30 230 50 HOH HOH . 
E 4 HOH B 31 231 67 HOH HOH . 
E 4 HOH B 32 232 74 HOH HOH . 
E 4 HOH B 33 233 53 HOH HOH . 
E 4 HOH B 34 234 45 HOH HOH . 
E 4 HOH B 35 235 59 HOH HOH . 
E 4 HOH B 36 236 77 HOH HOH . 
E 4 HOH B 37 237 64 HOH HOH . 
E 4 HOH B 38 238 25 HOH HOH . 
E 4 HOH B 39 239 62 HOH HOH . 
E 4 HOH B 40 240 79 HOH HOH . 
E 4 HOH B 41 241 111 HOH HOH . 
E 4 HOH B 42 242 102 HOH HOH . 
E 4 HOH B 43 243 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 3 -39.257 -4.617 -11.508 1 17.96 ? N SAH 301 A 1 
HETATM 2 C CA SAH . . . C 3 -38.201 -3.745 -10.926 1 16.92 ? CA SAH 301 A 1 
HETATM 3 C CB SAH . . . C 3 -36.817 -4.067 -11.521 1 16.87 ? CB SAH 301 A 1 
HETATM 4 C CG SAH . . . C 3 -36.648 -3.622 -12.976 1 17.04 ? CG SAH 301 A 1 
HETATM 5 S SD SAH . . . C 3 -34.974 -3.801 -13.598 1 17.44 ? SD SAH 301 A 1 
HETATM 6 C C SAH . . . C 3 -38.565 -2.278 -11.167 1 17.97 ? C SAH 301 A 1 
HETATM 7 O O SAH . . . C 3 -37.912 -1.417 -10.523 1 18.73 ? O SAH 301 A 1 
HETATM 8 O OXT SAH . . . C 3 -39.492 -2.008 -11.953 1 18.5 ? OXT SAH 301 A 1 
HETATM 9 C C5' SAH . . . C 3 -34.979 -5.385 -14.479 1 16.39 ? C5' SAH 301 A 1 
HETATM 10 C C4' SAH . . . C 3 -35.011 -6.583 -13.559 1 16.62 ? C4' SAH 301 A 1 
HETATM 11 O O4' SAH . . . C 3 -35.047 -7.764 -14.406 1 16.6 ? O4' SAH 301 A 1 
HETATM 12 C C3' SAH . . . C 3 -33.803 -6.764 -12.624 1 16.35 ? C3' SAH 301 A 1 
HETATM 13 O O3' SAH . . . C 3 -34.186 -7.005 -11.271 1 16.48 ? O3' SAH 301 A 1 
HETATM 14 C C2' SAH . . . C 3 -33.037 -7.933 -13.257 1 15.83 ? C2' SAH 301 A 1 
HETATM 15 O O2' SAH . . . C 3 -32.207 -8.702 -12.4 1 16.8 ? O2' SAH 301 A 1 
HETATM 16 C C1' SAH . . . C 3 -34.18 -8.728 -13.866 1 16.22 ? C1' SAH 301 A 1 
HETATM 17 N N9 SAH . . . C 3 -33.796 -9.65 -14.931 1 16.34 ? N9 SAH 301 A 1 
HETATM 18 C C8 SAH . . . C 3 -32.945 -9.406 -15.985 1 17.04 ? C8 SAH 301 A 1 
HETATM 19 N N7 SAH . . . C 3 -32.843 -10.426 -16.82 1 17.56 ? N7 SAH 301 A 1 
HETATM 20 C C5 SAH . . . C 3 -33.735 -11.369 -16.323 1 17.24 ? C5 SAH 301 A 1 
HETATM 21 C C6 SAH . . . C 3 -34.088 -12.657 -16.751 1 17.87 ? C6 SAH 301 A 1 
HETATM 22 N N6 SAH . . . C 3 -33.582 -13.223 -17.852 1 19.16 ? N6 SAH 301 A 1 
HETATM 23 N N1 SAH . . . C 3 -35.039 -13.313 -16.037 1 17.99 ? N1 SAH 301 A 1 
HETATM 24 C C2 SAH . . . C 3 -35.516 -12.738 -14.929 1 17.7 ? C2 SAH 301 A 1 
HETATM 25 N N3 SAH . . . C 3 -35.218 -11.542 -14.41 1 16.31 ? N3 SAH 301 A 1 
HETATM 26 C C4 SAH . . . C 3 -34.319 -10.903 -15.163 1 16.66 ? C4 SAH 301 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#