data_9FMM # _model_server_result.job_id ugFG7TXIZIEp26zXzYXUWA _model_server_result.datetime_utc '2025-01-12 01:42:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":806}' # _entry.id 9FMM # _exptl.entry_id 9FMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.2 _cell.angle_gamma 90 _cell.entry_id 9FMM _cell.length_a 99.3 _cell.length_b 82.9 _cell.length_c 105.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,AA 1 1 B,O,P,Q,R,S,T,U,V,W,X,Y,Z,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 R N N ? 4 T N N ? 4 U N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 133 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 326 A CYS 344 1_555 A SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 512 A CYS 530 1_555 A SG CYS 524 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 115 B CYS 133 1_555 B SG CYS 123 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf5 B SG CYS 326 B CYS 344 1_555 B SG CYS 343 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 B SG CYS 512 B CYS 530 1_555 B SG CYS 524 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 35 A ASN 53 1_555 D C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 414 A ASN 432 1_555 G C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 672 A ASN 690 1_555 E C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 B ND2 ASN 72 B ASN 90 1_555 S C1 NAG . B NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B ND2 ASN 414 B ASN 432 1_555 O C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 B ND2 ASN 672 B ASN 690 1_555 Q C1 NAG . B NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 A O ALA 246 A ALA 264 1_555 M NA NA . A NA 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc2 A O ASP 251 A ASP 269 1_555 M NA NA . A NA 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc3 A NE2 HIS 356 A HIS 374 1_555 N ZN ZN . A ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc4 A NE2 HIS 360 A HIS 378 1_555 N ZN ZN . A ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc5 A OE1 GLU 384 A GLU 402 1_555 N ZN ZN . A ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc6 C O27 A1IDX . A A1IDX 801 1_555 N ZN ZN . A ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc7 C O28 A1IDX . A A1IDX 801 1_555 N ZN ZN . A ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc8 B O ALA 246 B ALA 264 1_555 Y NA NA . B NA 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc9 B O ASP 251 B ASP 269 1_555 Y NA NA . B NA 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc10 B NE2 HIS 356 B HIS 374 1_555 Z ZN ZN . B ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc11 B NE2 HIS 360 B HIS 378 1_555 Z ZN ZN . B ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc12 B OE1 GLU 384 B GLU 402 1_555 Z ZN ZN . B ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc13 P O27 A1IDX . B A1IDX 802 1_555 Z ZN ZN . B ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc14 P O28 A1IDX . B A1IDX 802 1_555 Z ZN ZN . B ZN 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 135 n n C1 C2 EDO sing 136 n n C1 H11 EDO sing 137 n n C1 H12 EDO sing 138 n n O1 HO1 EDO sing 139 n n C2 O2 EDO sing 140 n n C2 H21 EDO sing 141 n n C2 H22 EDO sing 142 n n O2 HO2 EDO sing 143 n n # _atom_sites.entry_id 9FMM _atom_sites.fract_transf_matrix[1][1] 0.01007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002548 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1IDX A 1 801 804 A1IDX LIG . D 3 NAG A 1 802 805 NAG NAG . E 3 NAG A 1 803 806 NAG NAG . F 4 EDO A 1 804 807 EDO EDO . G 3 NAG A 1 805 809 NAG NAG . H 4 EDO A 1 806 810 EDO EDO . I 4 EDO A 1 807 811 EDO EDO . J 4 EDO A 1 808 812 EDO EDO . K 4 EDO A 1 809 813 EDO EDO . L 5 CL A 1 810 1 CL CL . M 6 NA A 1 811 2 NA NA . N 7 ZN A 1 812 1 ZN ZN . O 3 NAG B 1 801 729 NAG NAG . P 2 A1IDX B 1 802 804 A1IDX LIG . Q 3 NAG B 1 803 805 NAG NAG . R 4 EDO B 1 804 806 EDO EDO . S 3 NAG B 1 805 808 NAG NAG . T 4 EDO B 1 806 810 EDO EDO . U 4 EDO B 1 807 811 EDO EDO . V 4 EDO B 1 808 812 EDO EDO . W 5 CL B 1 809 2 CL CL . X 5 CL B 1 810 3 CL CL . Y 6 NA B 1 811 1 NA NA . Z 7 ZN B 1 812 2 ZN ZN . AA 8 HOH A 1 901 87 HOH HOH . AA 8 HOH A 2 902 17 HOH HOH . AA 8 HOH A 3 903 30 HOH HOH . AA 8 HOH A 4 904 155 HOH HOH . AA 8 HOH A 5 905 22 HOH HOH . AA 8 HOH A 6 906 43 HOH HOH . AA 8 HOH A 7 907 1 HOH HOH . AA 8 HOH A 8 908 77 HOH HOH . AA 8 HOH A 9 909 45 HOH HOH . AA 8 HOH A 10 910 101 HOH HOH . AA 8 HOH A 11 911 180 HOH HOH . AA 8 HOH A 12 912 115 HOH HOH . AA 8 HOH A 13 913 44 HOH HOH . AA 8 HOH A 14 914 42 HOH HOH . AA 8 HOH A 15 915 28 HOH HOH . AA 8 HOH A 16 916 92 HOH HOH . AA 8 HOH A 17 917 153 HOH HOH . AA 8 HOH A 18 918 82 HOH HOH . AA 8 HOH A 19 919 39 HOH HOH . AA 8 HOH A 20 920 46 HOH HOH . AA 8 HOH A 21 921 51 HOH HOH . AA 8 HOH A 22 922 80 HOH HOH . AA 8 HOH A 23 923 32 HOH HOH . AA 8 HOH A 24 924 27 HOH HOH . AA 8 HOH A 25 925 50 HOH HOH . AA 8 HOH A 26 926 11 HOH HOH . AA 8 HOH A 27 927 152 HOH HOH . AA 8 HOH A 28 928 6 HOH HOH . AA 8 HOH A 29 929 150 HOH HOH . AA 8 HOH A 30 930 128 HOH HOH . AA 8 HOH A 31 931 131 HOH HOH . AA 8 HOH A 32 932 144 HOH HOH . AA 8 HOH A 33 933 78 HOH HOH . AA 8 HOH A 34 934 71 HOH HOH . AA 8 HOH A 35 935 40 HOH HOH . AA 8 HOH A 36 936 119 HOH HOH . AA 8 HOH A 37 937 108 HOH HOH . AA 8 HOH A 38 938 142 HOH HOH . AA 8 HOH A 39 939 29 HOH HOH . AA 8 HOH A 40 940 96 HOH HOH . AA 8 HOH A 41 941 49 HOH HOH . AA 8 HOH A 42 942 54 HOH HOH . AA 8 HOH A 43 943 145 HOH HOH . AA 8 HOH A 44 944 157 HOH HOH . AA 8 HOH A 45 945 74 HOH HOH . AA 8 HOH A 46 946 143 HOH HOH . AA 8 HOH A 47 947 113 HOH HOH . AA 8 HOH A 48 948 141 HOH HOH . AA 8 HOH A 49 949 117 HOH HOH . AA 8 HOH A 50 950 154 HOH HOH . AA 8 HOH A 51 951 114 HOH HOH . AA 8 HOH A 52 952 156 HOH HOH . AA 8 HOH A 53 953 148 HOH HOH . AA 8 HOH A 54 954 151 HOH HOH . AA 8 HOH A 55 955 138 HOH HOH . AA 8 HOH A 56 956 129 HOH HOH . AA 8 HOH A 57 957 121 HOH HOH . AA 8 HOH A 58 958 105 HOH HOH . AA 8 HOH A 59 959 146 HOH HOH . AA 8 HOH A 60 960 55 HOH HOH . AA 8 HOH A 61 961 140 HOH HOH . AA 8 HOH A 62 962 107 HOH HOH . AA 8 HOH A 63 963 158 HOH HOH . AA 8 HOH A 64 964 183 HOH HOH . AA 8 HOH A 65 965 104 HOH HOH . AA 8 HOH A 66 966 89 HOH HOH . AA 8 HOH A 67 967 88 HOH HOH . AA 8 HOH A 68 968 109 HOH HOH . AA 8 HOH A 69 969 160 HOH HOH . AA 8 HOH A 70 970 120 HOH HOH . AA 8 HOH A 71 971 182 HOH HOH . AA 8 HOH A 72 972 181 HOH HOH . BA 8 HOH B 1 901 75 HOH HOH . BA 8 HOH B 2 902 161 HOH HOH . BA 8 HOH B 3 903 26 HOH HOH . BA 8 HOH B 4 904 125 HOH HOH . BA 8 HOH B 5 905 132 HOH HOH . BA 8 HOH B 6 906 94 HOH HOH . BA 8 HOH B 7 907 162 HOH HOH . BA 8 HOH B 8 908 149 HOH HOH . BA 8 HOH B 9 909 165 HOH HOH . BA 8 HOH B 10 910 91 HOH HOH . BA 8 HOH B 11 911 90 HOH HOH . BA 8 HOH B 12 912 62 HOH HOH . BA 8 HOH B 13 913 41 HOH HOH . BA 8 HOH B 14 914 52 HOH HOH . BA 8 HOH B 15 915 127 HOH HOH . BA 8 HOH B 16 916 130 HOH HOH . BA 8 HOH B 17 917 70 HOH HOH . BA 8 HOH B 18 918 21 HOH HOH . BA 8 HOH B 19 919 9 HOH HOH . BA 8 HOH B 20 920 61 HOH HOH . BA 8 HOH B 21 921 24 HOH HOH . BA 8 HOH B 22 922 13 HOH HOH . BA 8 HOH B 23 923 97 HOH HOH . BA 8 HOH B 24 924 14 HOH HOH . BA 8 HOH B 25 925 60 HOH HOH . BA 8 HOH B 26 926 20 HOH HOH . BA 8 HOH B 27 927 116 HOH HOH . BA 8 HOH B 28 928 16 HOH HOH . BA 8 HOH B 29 929 81 HOH HOH . BA 8 HOH B 30 930 47 HOH HOH . BA 8 HOH B 31 931 79 HOH HOH . BA 8 HOH B 32 932 176 HOH HOH . BA 8 HOH B 33 933 2 HOH HOH . BA 8 HOH B 34 934 37 HOH HOH . BA 8 HOH B 35 935 100 HOH HOH . BA 8 HOH B 36 936 86 HOH HOH . BA 8 HOH B 37 937 4 HOH HOH . BA 8 HOH B 38 938 18 HOH HOH . BA 8 HOH B 39 939 3 HOH HOH . BA 8 HOH B 40 940 33 HOH HOH . BA 8 HOH B 41 941 174 HOH HOH . BA 8 HOH B 42 942 122 HOH HOH . BA 8 HOH B 43 943 65 HOH HOH . BA 8 HOH B 44 944 12 HOH HOH . BA 8 HOH B 45 945 126 HOH HOH . BA 8 HOH B 46 946 31 HOH HOH . BA 8 HOH B 47 947 93 HOH HOH . BA 8 HOH B 48 948 124 HOH HOH . BA 8 HOH B 49 949 76 HOH HOH . BA 8 HOH B 50 950 173 HOH HOH . BA 8 HOH B 51 951 5 HOH HOH . BA 8 HOH B 52 952 168 HOH HOH . BA 8 HOH B 53 953 167 HOH HOH . BA 8 HOH B 54 954 135 HOH HOH . BA 8 HOH B 55 955 134 HOH HOH . BA 8 HOH B 56 956 38 HOH HOH . BA 8 HOH B 57 957 111 HOH HOH . BA 8 HOH B 58 958 58 HOH HOH . BA 8 HOH B 59 959 56 HOH HOH . BA 8 HOH B 60 960 23 HOH HOH . BA 8 HOH B 61 961 34 HOH HOH . BA 8 HOH B 62 962 64 HOH HOH . BA 8 HOH B 63 963 103 HOH HOH . BA 8 HOH B 64 964 164 HOH HOH . BA 8 HOH B 65 965 118 HOH HOH . BA 8 HOH B 66 966 172 HOH HOH . BA 8 HOH B 67 967 177 HOH HOH . BA 8 HOH B 68 968 66 HOH HOH . BA 8 HOH B 69 969 175 HOH HOH . BA 8 HOH B 70 970 112 HOH HOH . BA 8 HOH B 71 971 110 HOH HOH . BA 8 HOH B 72 972 178 HOH HOH . BA 8 HOH B 73 973 179 HOH HOH . BA 8 HOH B 74 974 159 HOH HOH . BA 8 HOH B 75 975 169 HOH HOH . BA 8 HOH B 76 976 133 HOH HOH . BA 8 HOH B 77 977 136 HOH HOH . BA 8 HOH B 78 978 163 HOH HOH . BA 8 HOH B 79 979 170 HOH HOH . BA 8 HOH B 80 980 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 26.177 -9.526 14.166 1 51.69 ? C1 EDO 806 A 1 HETATM 2 O O1 EDO . . . H 4 27.423 -9.588 13.475 1 56.55 ? O1 EDO 806 A 1 HETATM 3 C C2 EDO . . . H 4 25.53 -8.194 13.821 1 55.17 ? C2 EDO 806 A 1 HETATM 4 O O2 EDO . . . H 4 25.584 -7.965 12.405 1 53.29 ? O2 EDO 806 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #