data_9FMR
#
_model_server_result.job_id            '_TZ0SC5wYkJbhAxb3P6TTw' 
_model_server_result.datetime_utc      '2024-11-16 01:02:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fmr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1101}' 
#
_entry.id    9FMR 
#
_exptl.entry_id    9FMR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              499.356 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9FMR 
_cell.length_a            249.521 
_cell.length_b            249.521 
_cell.length_c            218.535 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FMR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 46 D CYS 18 1_555 D SG CYS 341 D CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 G SG CYS 46 G CYS 18 1_555 G SG CYS 341 G CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
covale ? covale1 B C TYR 180 B TYR 892 1_555 B N TPO 181 B TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C TPO 181 B TPO 893 1_555 B N ASN 182 B ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 E C TYR 180 E TYR 892 1_555 E N TPO 181 E TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 E C TPO 181 E TPO 893 1_555 E N ASN 182 E ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 H C TYR 180 H TYR 892 1_555 H N TPO 181 H TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 H C TPO 181 H TPO 893 1_555 H N ASN 182 H ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C21 H20 Cl2 N10 O' 
_chem_comp.formula_weight    499.356 
_chem_comp.id                RMF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[[5,6-bis(chloranyl)-1~{H}-benzimidazol-2-yl]methyl]-9-(1-methylpyrazol-4-yl)-2-morpholin-4-yl-purin-6-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N7 C8 RMF doub 277 n y 
N7 N8 RMF sing 278 n y 
C10 N8 RMF sing 279 n n 
C8 C7 RMF sing 280 n y 
N8 C9 RMF sing 281 n y 
C7 C9 RMF doub 282 n y 
C7 N5 RMF sing 283 n n 
C6 N5 RMF sing 284 n y 
C6 N4 RMF doub 285 n y 
N5 C4 RMF sing 286 n y 
N4 C5 RMF sing 287 n y 
C4 C5 RMF doub 288 n y 
C4 N3 RMF sing 289 n y 
C5 C2 RMF sing 290 n y 
N3 C3 RMF doub 291 n y 
C2 N1 RMF sing 292 n n 
C2 N2 RMF doub 293 n y 
C3 N2 RMF sing 294 n y 
C3 N6 RMF sing 295 n n 
N1 C1 RMF sing 296 n n 
C14 N6 RMF sing 297 n n 
C14 C13 RMF sing 298 n n 
N6 C11 RMF sing 299 n n 
C1 C15 RMF sing 300 n n 
C13 O1 RMF sing 301 n n 
C11 C12 RMF sing 302 n n 
C15 N10 RMF doub 303 n y 
C15 N9 RMF sing 304 n y 
O1 C12 RMF sing 305 n n 
N10 C17 RMF sing 306 n y 
N9 C16 RMF sing 307 n y 
C17 C16 RMF doub 308 n y 
C17 C21 RMF sing 309 n y 
C16 C18 RMF sing 310 n y 
C21 C20 RMF doub 311 n y 
C18 C19 RMF doub 312 n y 
C20 C19 RMF sing 313 n y 
C20 CL2 RMF sing 314 n n 
C19 CL1 RMF sing 315 n n 
C6 H61 RMF sing 316 n n 
C8 H81 RMF sing 317 n n 
C10 H103 RMF sing 318 n n 
C10 H101 RMF sing 319 n n 
C10 H102 RMF sing 320 n n 
C1 H11 RMF sing 321 n n 
C1 H12 RMF sing 322 n n 
C9 H92 RMF sing 323 n n 
C11 H112 RMF sing 324 n n 
C11 H111 RMF sing 325 n n 
C12 H122 RMF sing 326 n n 
C12 H121 RMF sing 327 n n 
C13 H132 RMF sing 328 n n 
C13 H131 RMF sing 329 n n 
C14 H141 RMF sing 330 n n 
C14 H142 RMF sing 331 n n 
C18 H181 RMF sing 332 n n 
C21 H211 RMF sing 333 n n 
N1 H13 RMF sing 334 n n 
N9 H91 RMF sing 335 n n 
#
_atom_sites.entry_id                     9FMR 
_atom_sites.fract_transf_matrix[1][1]    0.004008 
_atom_sites.fract_transf_matrix[1][2]    0.002314 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004628 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 RMF B 1 1101 1101 RMF RMF . 
K 4 RMF E 1 1101 1101 RMF RMF . 
L 4 RMF H 1 1101 1101 RMF RMF . 
M 5 HOH A 1 1201 3 HOH HOH . 
M 5 HOH A 2 1202 1 HOH HOH . 
N 5 HOH F 1 301 2 HOH HOH . 
O 5 HOH I 1 301 4 HOH HOH . 
O 5 HOH I 2 302 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 RMF . . . J 4 -105.202 -71.157 -11.62 1 233.86 ? C4 RMF 1101 B 1 
HETATM 2 C C5 RMF . . . J 4 -104.239 -70.404 -10.995 1 222.71 ? C5 RMF 1101 B 1 
HETATM 3 C C6 RMF . . . J 4 -103.735 -72.521 -10.743 1 221.69 ? C6 RMF 1101 B 1 
HETATM 4 C C7 RMF . . . J 4 -105.585 -73.621 -11.944 1 229.3 ? C7 RMF 1101 B 1 
HETATM 5 C C8 RMF . . . J 4 -105.159 -74.968 -11.952 1 220.58 ? C8 RMF 1101 B 1 
HETATM 6 C C10 RMF . . . J 4 -108.377 -75.363 -13.414 1 242.31 ? C10 RMF 1101 B 1 
HETATM 7 C C1 RMF . . . J 4 -103.01 -66.829 -10.839 1 241.29 ? C1 RMF 1101 B 1 
HETATM 8 C C2 RMF . . . J 4 -104.371 -68.987 -11.038 1 235.66 ? C2 RMF 1101 B 1 
HETATM 9 C C3 RMF . . . J 4 -106.325 -69.215 -12.269 1 232.92 ? C3 RMF 1101 B 1 
HETATM 10 C C9 RMF . . . J 4 -106.881 -73.652 -12.511 1 245.88 ? C9 RMF 1101 B 1 
HETATM 11 O O1 RMF . . . J 4 -109.883 -67.25 -14.005 1 226.95 ? O1 RMF 1101 B 1 
HETATM 12 C C11 RMF . . . J 4 -108.747 -69.309 -13.071 1 221.57 ? C11 RMF 1101 B 1 
HETATM 13 C C12 RMF . . . J 4 -109.933 -68.612 -13.739 1 230.86 ? C12 RMF 1101 B 1 
HETATM 14 C C13 RMF . . . J 4 -108.697 -66.544 -13.858 1 211.33 ? C13 RMF 1101 B 1 
HETATM 15 C C14 RMF . . . J 4 -107.398 -67.3 -13.588 1 202.6 ? C14 RMF 1101 B 1 
HETATM 16 C C15 RMF . . . J 4 -104.007 -65.83 -10.252 1 241.74 ? C15 RMF 1101 B 1 
HETATM 17 C C16 RMF . . . J 4 -105.474 -64.228 -10.079 1 238.51 ? C16 RMF 1101 B 1 
HETATM 18 C C17 RMF . . . J 4 -105.251 -64.751 -8.834 1 238.11 ? C17 RMF 1101 B 1 
HETATM 19 C C18 RMF . . . J 4 -106.394 -63.164 -10.251 1 229.27 ? C18 RMF 1101 B 1 
HETATM 20 C C19 RMF . . . J 4 -107.069 -62.651 -9.149 1 232.42 ? C19 RMF 1101 B 1 
HETATM 21 C C20 RMF . . . J 4 -106.84 -63.185 -7.877 1 227.05 ? C20 RMF 1101 B 1 
HETATM 22 C C21 RMF . . . J 4 -105.938 -64.227 -7.71 1 226.77 ? C21 RMF 1101 B 1 
HETATM 23 N N1 RMF . . . J 4 -103.369 -68.162 -10.376 1 234.21 ? N1 RMF 1101 B 1 
HETATM 24 N N10 RMF . . . J 4 -104.331 -65.745 -8.974 1 240.59 ? N10 RMF 1101 B 1 
HETATM 25 N N2 RMF . . . J 4 -105.415 -68.442 -11.671 1 248.95 ? N2 RMF 1101 B 1 
HETATM 26 N N3 RMF . . . J 4 -106.233 -70.536 -12.253 1 236.9 ? N3 RMF 1101 B 1 
HETATM 27 N N4 RMF . . . J 4 -103.347 -71.283 -10.463 1 206.32 ? N4 RMF 1101 B 1 
HETATM 28 N N5 RMF . . . J 4 -104.852 -72.467 -11.448 1 223.64 ? N5 RMF 1101 B 1 
HETATM 29 N N6 RMF . . . J 4 -107.461 -68.615 -12.953 1 208.09 ? N6 RMF 1101 B 1 
HETATM 30 N N7 RMF . . . J 4 -106.119 -75.686 -12.481 1 220.6 ? N7 RMF 1101 B 1 
HETATM 31 N N8 RMF . . . J 4 -107.141 -74.901 -12.81 1 250.73 ? N8 RMF 1101 B 1 
HETATM 32 N N9 RMF . . . J 4 -104.682 -64.923 -10.936 1 243.26 ? N9 RMF 1101 B 1 
HETATM 33 CL CL1 RMF . . . J 4 -108.226 -61.311 -9.372 1 285.6 ? CL1 RMF 1101 B 1 
HETATM 34 CL CL2 RMF . . . J 4 -107.698 -62.539 -6.452 1 253.42 ? CL2 RMF 1101 B 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    261 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          43 
_model_server_stats.element_count           34 
#