data_9FNM
#
_model_server_result.job_id            lmwrrHVhADTotzI4mRFawg 
_model_server_result.datetime_utc      '2025-08-24 11:04:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fnm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    9FNM 
#
_exptl.entry_id    9FNM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.508 
_cell.angle_gamma         90 
_cell.entry_id            9FNM 
_cell.length_a            89.887 
_cell.length_b            77.639 
_cell.length_c            65.085 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FNM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 2.848047 0 -65.022656 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 15 A CYS 92 1_555 A SG CYS 15 A CYS 92 2_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 34 A CYS 111 1_555 A SG CYS 68 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 72 A CYS 149 1_555 B SG CYS 105 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 148 B CYS 309 1_555 B SG CYS 179 B CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 190 B CYS 351 1_555 B SG CYS 220 B CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 B ND2 ASN 80 B ASN 241 1_555 C C1 NAG . B NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9FNM 
_atom_sites.fract_transf_matrix[1][1]    0.011125 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000487 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01288 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG B 1 1000 1000 NAG NAG . 
D 4 HOH A 1 201 61 HOH HOH . 
D 4 HOH A 2 202 32 HOH HOH . 
D 4 HOH A 3 203 64 HOH HOH . 
D 4 HOH A 4 204 54 HOH HOH . 
D 4 HOH A 5 205 21 HOH HOH . 
D 4 HOH A 6 206 49 HOH HOH . 
D 4 HOH A 7 207 28 HOH HOH . 
D 4 HOH A 8 208 84 HOH HOH . 
D 4 HOH A 9 209 85 HOH HOH . 
D 4 HOH A 10 210 38 HOH HOH . 
D 4 HOH A 11 211 23 HOH HOH . 
D 4 HOH A 12 212 65 HOH HOH . 
D 4 HOH A 13 213 52 HOH HOH . 
D 4 HOH A 14 214 25 HOH HOH . 
D 4 HOH A 15 215 48 HOH HOH . 
D 4 HOH A 16 216 45 HOH HOH . 
D 4 HOH A 17 217 27 HOH HOH . 
D 4 HOH A 18 218 90 HOH HOH . 
D 4 HOH A 19 219 73 HOH HOH . 
D 4 HOH A 20 220 74 HOH HOH . 
D 4 HOH A 21 221 82 HOH HOH . 
D 4 HOH A 22 222 75 HOH HOH . 
E 4 HOH B 1 1101 66 HOH HOH . 
E 4 HOH B 2 1102 47 HOH HOH . 
E 4 HOH B 3 1103 53 HOH HOH . 
E 4 HOH B 4 1104 35 HOH HOH . 
E 4 HOH B 5 1105 89 HOH HOH . 
E 4 HOH B 6 1106 20 HOH HOH . 
E 4 HOH B 7 1107 80 HOH HOH . 
E 4 HOH B 8 1108 81 HOH HOH . 
E 4 HOH B 9 1109 78 HOH HOH . 
E 4 HOH B 10 1110 63 HOH HOH . 
E 4 HOH B 11 1111 60 HOH HOH . 
E 4 HOH B 12 1112 9 HOH HOH . 
E 4 HOH B 13 1113 39 HOH HOH . 
E 4 HOH B 14 1114 41 HOH HOH . 
E 4 HOH B 15 1115 11 HOH HOH . 
E 4 HOH B 16 1116 83 HOH HOH . 
E 4 HOH B 17 1117 36 HOH HOH . 
E 4 HOH B 18 1118 4 HOH HOH . 
E 4 HOH B 19 1119 1 HOH HOH . 
E 4 HOH B 20 1120 14 HOH HOH . 
E 4 HOH B 21 1121 7 HOH HOH . 
E 4 HOH B 22 1122 22 HOH HOH . 
E 4 HOH B 23 1123 51 HOH HOH . 
E 4 HOH B 24 1124 2 HOH HOH . 
E 4 HOH B 25 1125 8 HOH HOH . 
E 4 HOH B 26 1126 24 HOH HOH . 
E 4 HOH B 27 1127 92 HOH HOH . 
E 4 HOH B 28 1128 42 HOH HOH . 
E 4 HOH B 29 1129 16 HOH HOH . 
E 4 HOH B 30 1130 57 HOH HOH . 
E 4 HOH B 31 1131 17 HOH HOH . 
E 4 HOH B 32 1132 37 HOH HOH . 
E 4 HOH B 33 1133 44 HOH HOH . 
E 4 HOH B 34 1134 18 HOH HOH . 
E 4 HOH B 35 1135 19 HOH HOH . 
E 4 HOH B 36 1136 31 HOH HOH . 
E 4 HOH B 37 1137 68 HOH HOH . 
E 4 HOH B 38 1138 58 HOH HOH . 
E 4 HOH B 39 1139 56 HOH HOH . 
E 4 HOH B 40 1140 5 HOH HOH . 
E 4 HOH B 41 1141 33 HOH HOH . 
E 4 HOH B 42 1142 40 HOH HOH . 
E 4 HOH B 43 1143 3 HOH HOH . 
E 4 HOH B 44 1144 12 HOH HOH . 
E 4 HOH B 45 1145 26 HOH HOH . 
E 4 HOH B 46 1146 29 HOH HOH . 
E 4 HOH B 47 1147 34 HOH HOH . 
E 4 HOH B 48 1148 43 HOH HOH . 
E 4 HOH B 49 1149 55 HOH HOH . 
E 4 HOH B 50 1150 72 HOH HOH . 
E 4 HOH B 51 1151 62 HOH HOH . 
E 4 HOH B 52 1152 79 HOH HOH . 
E 4 HOH B 53 1153 30 HOH HOH . 
E 4 HOH B 54 1154 10 HOH HOH . 
E 4 HOH B 55 1155 71 HOH HOH . 
E 4 HOH B 56 1156 50 HOH HOH . 
E 4 HOH B 57 1157 15 HOH HOH . 
E 4 HOH B 58 1158 69 HOH HOH . 
E 4 HOH B 59 1159 13 HOH HOH . 
E 4 HOH B 60 1160 67 HOH HOH . 
E 4 HOH B 61 1161 46 HOH HOH . 
E 4 HOH B 62 1162 70 HOH HOH . 
E 4 HOH B 63 1163 6 HOH HOH . 
E 4 HOH B 64 1164 87 HOH HOH . 
E 4 HOH B 65 1165 91 HOH HOH . 
E 4 HOH B 66 1166 59 HOH HOH . 
E 4 HOH B 67 1167 86 HOH HOH . 
E 4 HOH B 68 1168 93 HOH HOH . 
E 4 HOH B 69 1169 76 HOH HOH . 
E 4 HOH B 70 1170 77 HOH HOH . 
E 4 HOH B 71 1171 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 10.504 45.249 18.955 1 72.72 ? C1 NAG 1000 B 1 
HETATM 2 C C2 NAG . . . C 3 9.96 44.372 17.821 1 74.69 ? C2 NAG 1000 B 1 
HETATM 3 C C3 NAG . . . C 3 8.731 43.616 18.316 1 75.52 ? C3 NAG 1000 B 1 
HETATM 4 C C4 NAG . . . C 3 9.108 42.779 19.535 1 80.41 ? C4 NAG 1000 B 1 
HETATM 5 C C5 NAG . . . C 3 9.574 43.733 20.62 1 74.64 ? C5 NAG 1000 B 1 
HETATM 6 C C6 NAG . . . C 3 10.09 43.091 21.898 1 74.54 ? C6 NAG 1000 B 1 
HETATM 7 C C7 NAG . . . C 3 10.159 45.026 15.453 1 66.83 ? C7 NAG 1000 B 1 
HETATM 8 C C8 NAG . . . C 3 9.658 45.959 14.379 1 56.59 ? C8 NAG 1000 B 1 
HETATM 9 N N2 NAG . . . C 3 9.606 45.167 16.681 1 66.19 ? N2 NAG 1000 B 1 
HETATM 10 O O3 NAG . . . C 3 8.265 42.823 17.272 1 75.38 ? O3 NAG 1000 B 1 
HETATM 11 O O4 NAG . . . C 3 7.94 42.106 19.932 1 76.85 ? O4 NAG 1000 B 1 
HETATM 12 O O5 NAG . . . C 3 10.64 44.524 20.155 1 81.64 ? O5 NAG 1000 B 1 
HETATM 13 O O6 NAG . . . C 3 9.059 42.95 22.845 1 81.42 ? O6 NAG 1000 B 1 
HETATM 14 O O7 NAG . . . C 3 11.02 44.199 15.207 1 64.24 ? O7 NAG 1000 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#