data_9FOB # _model_server_result.job_id LhH-BkyxrLF6a7UVNSbweA _model_server_result.datetime_utc '2025-08-19 21:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 9FOB # _exptl.entry_id 9FOB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9FOB _cell.length_a 116.938 _cell.length_b 116.938 _cell.length_c 95.474 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 242 n n PA O2A NAP sing 243 n n PA O5B NAP sing 244 n n PA O3 NAP sing 245 n n O2A HOA2 NAP sing 246 n n O5B C5B NAP sing 247 n n C5B C4B NAP sing 248 n n C5B H51A NAP sing 249 n n C5B H52A NAP sing 250 n n C4B O4B NAP sing 251 n n C4B C3B NAP sing 252 n n C4B H4B NAP sing 253 n n O4B C1B NAP sing 254 n n C3B O3B NAP sing 255 n n C3B C2B NAP sing 256 n n C3B H3B NAP sing 257 n n O3B HO3A NAP sing 258 n n C2B O2B NAP sing 259 n n C2B C1B NAP sing 260 n n C2B H2B NAP sing 261 n n O2B P2B NAP sing 262 n n C1B N9A NAP sing 263 n n C1B H1B NAP sing 264 n n N9A C8A NAP sing 265 n y N9A C4A NAP sing 266 n y C8A N7A NAP doub 267 n y C8A H8A NAP sing 268 n n N7A C5A NAP sing 269 n y C5A C6A NAP sing 270 n y C5A C4A NAP doub 271 n y C6A N6A NAP sing 272 n n C6A N1A NAP doub 273 n y N6A H61A NAP sing 274 n n N6A H62A NAP sing 275 n n N1A C2A NAP sing 276 n y C2A N3A NAP doub 277 n y C2A H2A NAP sing 278 n n N3A C4A NAP sing 279 n y O3 PN NAP sing 280 n n PN O1N NAP doub 281 n n PN O2N NAP sing 282 n n PN O5D NAP sing 283 n n O5D C5D NAP sing 284 n n C5D C4D NAP sing 285 n n C5D H51N NAP sing 286 n n C5D H52N NAP sing 287 n n C4D O4D NAP sing 288 n n C4D C3D NAP sing 289 n n C4D H4D NAP sing 290 n n O4D C1D NAP sing 291 n n C3D O3D NAP sing 292 n n C3D C2D NAP sing 293 n n C3D H3D NAP sing 294 n n O3D HO3N NAP sing 295 n n C2D O2D NAP sing 296 n n C2D C1D NAP sing 297 n n C2D H2D NAP sing 298 n n O2D HO2N NAP sing 299 n n C1D N1N NAP sing 300 n n C1D H1D NAP sing 301 n n N1N C2N NAP sing 302 n y N1N C6N NAP doub 303 n y C2N C3N NAP doub 304 n y C2N H2N NAP sing 305 n n C3N C7N NAP sing 306 n n C3N C4N NAP sing 307 n y C7N O7N NAP doub 308 n n C7N N7N NAP sing 309 n n N7N H71N NAP sing 310 n n N7N H72N NAP sing 311 n n C4N C5N NAP doub 312 n y C4N H4N NAP sing 313 n n C5N C6N NAP sing 314 n y C5N H5N NAP sing 315 n n C6N H6N NAP sing 316 n n P2B O1X NAP doub 317 n n P2B O2X NAP sing 318 n n P2B O3X NAP sing 319 n n O2X HOP2 NAP sing 320 n n O3X HOP3 NAP sing 321 n n # _atom_sites.entry_id 9FOB _atom_sites.fract_transf_matrix[1][1] 0.008552 _atom_sites.fract_transf_matrix[1][2] 0.004937 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 401 401 NAP NAP . F 3 MOH A 1 402 402 MOH MOH . G 3 MOH A 1 403 403 MOH MOH . H 2 NAP B 1 401 401 NAP NAP . I 2 NAP C 1 401 401 NAP NAP . J 2 NAP D 1 401 401 NAP NAP . K 4 HOH A 1 501 89 HOH HOH . K 4 HOH A 2 502 46 HOH HOH . K 4 HOH A 3 503 41 HOH HOH . K 4 HOH A 4 504 86 HOH HOH . K 4 HOH A 5 505 94 HOH HOH . K 4 HOH A 6 506 44 HOH HOH . K 4 HOH A 7 507 28 HOH HOH . K 4 HOH A 8 508 31 HOH HOH . K 4 HOH A 9 509 64 HOH HOH . K 4 HOH A 10 510 57 HOH HOH . K 4 HOH A 11 511 98 HOH HOH . K 4 HOH A 12 512 10 HOH HOH . K 4 HOH A 13 513 48 HOH HOH . K 4 HOH A 14 514 21 HOH HOH . K 4 HOH A 15 515 51 HOH HOH . K 4 HOH A 16 516 24 HOH HOH . K 4 HOH A 17 517 3 HOH HOH . K 4 HOH A 18 518 69 HOH HOH . K 4 HOH A 19 519 79 HOH HOH . K 4 HOH A 20 520 4 HOH HOH . K 4 HOH A 21 521 35 HOH HOH . K 4 HOH A 22 522 62 HOH HOH . K 4 HOH A 23 523 70 HOH HOH . K 4 HOH A 24 524 97 HOH HOH . K 4 HOH A 25 525 88 HOH HOH . K 4 HOH A 26 526 14 HOH HOH . K 4 HOH A 27 527 40 HOH HOH . K 4 HOH A 28 528 36 HOH HOH . K 4 HOH A 29 529 101 HOH HOH . K 4 HOH A 30 530 67 HOH HOH . K 4 HOH A 31 531 6 HOH HOH . L 4 HOH B 1 501 63 HOH HOH . L 4 HOH B 2 502 84 HOH HOH . L 4 HOH B 3 503 29 HOH HOH . L 4 HOH B 4 504 22 HOH HOH . L 4 HOH B 5 505 92 HOH HOH . L 4 HOH B 6 506 45 HOH HOH . L 4 HOH B 7 507 15 HOH HOH . L 4 HOH B 8 508 8 HOH HOH . L 4 HOH B 9 509 32 HOH HOH . L 4 HOH B 10 510 55 HOH HOH . L 4 HOH B 11 511 76 HOH HOH . L 4 HOH B 12 512 87 HOH HOH . L 4 HOH B 13 513 2 HOH HOH . L 4 HOH B 14 514 16 HOH HOH . L 4 HOH B 15 515 103 HOH HOH . L 4 HOH B 16 516 33 HOH HOH . L 4 HOH B 17 517 27 HOH HOH . L 4 HOH B 18 518 30 HOH HOH . L 4 HOH B 19 519 104 HOH HOH . L 4 HOH B 20 520 1 HOH HOH . L 4 HOH B 21 521 18 HOH HOH . L 4 HOH B 22 522 5 HOH HOH . L 4 HOH B 23 523 23 HOH HOH . L 4 HOH B 24 524 81 HOH HOH . L 4 HOH B 25 525 100 HOH HOH . L 4 HOH B 26 526 91 HOH HOH . L 4 HOH B 27 527 50 HOH HOH . L 4 HOH B 28 528 102 HOH HOH . M 4 HOH C 1 501 20 HOH HOH . M 4 HOH C 2 502 54 HOH HOH . M 4 HOH C 3 503 59 HOH HOH . M 4 HOH C 4 504 73 HOH HOH . M 4 HOH C 5 505 12 HOH HOH . M 4 HOH C 6 506 83 HOH HOH . M 4 HOH C 7 507 68 HOH HOH . M 4 HOH C 8 508 60 HOH HOH . M 4 HOH C 9 509 52 HOH HOH . M 4 HOH C 10 510 11 HOH HOH . M 4 HOH C 11 511 78 HOH HOH . M 4 HOH C 12 512 37 HOH HOH . M 4 HOH C 13 513 80 HOH HOH . N 4 HOH D 1 501 82 HOH HOH . N 4 HOH D 2 502 9 HOH HOH . N 4 HOH D 3 503 47 HOH HOH . N 4 HOH D 4 504 93 HOH HOH . N 4 HOH D 5 505 75 HOH HOH . N 4 HOH D 6 506 90 HOH HOH . N 4 HOH D 7 507 34 HOH HOH . N 4 HOH D 8 508 17 HOH HOH . N 4 HOH D 9 509 13 HOH HOH . N 4 HOH D 10 510 66 HOH HOH . N 4 HOH D 11 511 71 HOH HOH . N 4 HOH D 12 512 25 HOH HOH . N 4 HOH D 13 513 43 HOH HOH . N 4 HOH D 14 514 38 HOH HOH . N 4 HOH D 15 515 42 HOH HOH . N 4 HOH D 16 516 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . I 2 -36.645 28.746 -7.851 1 59.88 0 PA NAP 401 C 1 HETATM 2 O O1A NAP . . . I 2 -35.99 29.765 -6.974 1 59.55 0 O1A NAP 401 C 1 HETATM 3 O O2A NAP . . . I 2 -36.579 27.292 -7.533 1 59.04 0 O2A NAP 401 C 1 HETATM 4 O O5B NAP . . . I 2 -38.167 29.16 -8.119 1 69.58 0 O5B NAP 401 C 1 HETATM 5 C C5B NAP . . . I 2 -39.17 28.169 -8.386 1 67.6 0 C5B NAP 401 C 1 HETATM 6 C C4B NAP . . . I 2 -40.15 28.193 -7.243 1 70.2 0 C4B NAP 401 C 1 HETATM 7 O O4B NAP . . . I 2 -41.448 27.807 -7.757 1 76.61 0 O4B NAP 401 C 1 HETATM 8 C C3B NAP . . . I 2 -39.868 27.249 -6.062 1 62.22 0 C3B NAP 401 C 1 HETATM 9 O O3B NAP . . . I 2 -39.702 28.003 -4.871 1 57.54 0 O3B NAP 401 C 1 HETATM 10 C C2B NAP . . . I 2 -41.086 26.323 -6.017 1 64.51 0 C2B NAP 401 C 1 HETATM 11 O O2B NAP . . . I 2 -41.564 26.064 -4.702 1 64.59 0 O2B NAP 401 C 1 HETATM 12 C C1B NAP . . . I 2 -42.145 27.143 -6.736 1 68.36 0 C1B NAP 401 C 1 HETATM 13 N N9A NAP . . . I 2 -43.216 26.381 -7.364 1 66.05 0 N9A NAP 401 C 1 HETATM 14 C C8A NAP . . . I 2 -43.106 25.218 -8.081 1 68.08 0 C8A NAP 401 C 1 HETATM 15 N N7A NAP . . . I 2 -44.247 24.802 -8.568 1 68.72 0 N7A NAP 401 C 1 HETATM 16 C C5A NAP . . . I 2 -45.167 25.757 -8.16 1 60.14 0 C5A NAP 401 C 1 HETATM 17 C C6A NAP . . . I 2 -46.556 25.885 -8.357 1 57.16 0 C6A NAP 401 C 1 HETATM 18 N N6A NAP . . . I 2 -47.298 25.02 -9.041 1 56.45 0 N6A NAP 401 C 1 HETATM 19 N N1A NAP . . . I 2 -47.162 26.976 -7.837 1 65.72 0 N1A NAP 401 C 1 HETATM 20 C C2A NAP . . . I 2 -46.414 27.866 -7.172 1 69.15 0 C2A NAP 401 C 1 HETATM 21 N N3A NAP . . . I 2 -45.112 27.836 -6.897 1 69.67 0 N3A NAP 401 C 1 HETATM 22 C C4A NAP . . . I 2 -44.538 26.744 -7.43 1 63 0 C4A NAP 401 C 1 HETATM 23 O O3 NAP . . . I 2 -36.04 28.958 -9.305 1 52.21 0 O3 NAP 401 C 1 HETATM 24 P PN NAP . . . I 2 -35.915 30.275 -10.203 1 53.54 0 PN NAP 401 C 1 HETATM 25 O O1N NAP . . . I 2 -34.51 30.786 -10.262 1 48.11 0 O1N NAP 401 C 1 HETATM 26 O O2N NAP . . . I 2 -36.966 31.247 -9.744 1 53.5 0 O2N NAP 401 C 1 HETATM 27 O O5D NAP . . . I 2 -36.288 29.611 -11.609 1 50.06 0 O5D NAP 401 C 1 HETATM 28 C C5D NAP . . . I 2 -37.648 29.464 -12.05 1 53.98 0 C5D NAP 401 C 1 HETATM 29 C C4D NAP . . . I 2 -37.603 29.526 -13.549 1 58.64 0 C4D NAP 401 C 1 HETATM 30 O O4D NAP . . . I 2 -36.908 30.737 -13.934 1 59.42 0 O4D NAP 401 C 1 HETATM 31 C C3D NAP . . . I 2 -36.843 28.364 -14.21 1 56.39 0 C3D NAP 401 C 1 HETATM 32 O O3D NAP . . . I 2 -37.497 27.884 -15.378 1 65.37 0 O3D NAP 401 C 1 HETATM 33 C C2D NAP . . . I 2 -35.485 28.98 -14.551 1 54.43 0 C2D NAP 401 C 1 HETATM 34 O O2D NAP . . . I 2 -34.901 28.294 -15.641 1 55.44 0 O2D NAP 401 C 1 HETATM 35 C C1D NAP . . . I 2 -35.917 30.409 -14.899 1 58.49 0 C1D NAP 401 C 1 HETATM 36 N N1N NAP . . . I 2 -34.873 31.455 -14.837 1 60.45 0 N1N NAP 401 C 1 HETATM 37 C C2N NAP . . . I 2 -34.093 31.602 -13.709 1 58.35 0 C2N NAP 401 C 1 HETATM 38 C C3N NAP . . . I 2 -33.091 32.565 -13.687 1 53.13 0 C3N NAP 401 C 1 HETATM 39 C C7N NAP . . . I 2 -32.248 32.749 -12.462 1 53.79 0 C7N NAP 401 C 1 HETATM 40 O O7N NAP . . . I 2 -32.662 32.346 -11.362 1 53.26 0 O7N NAP 401 C 1 HETATM 41 N N7N NAP . . . I 2 -31.056 33.321 -12.58 1 49.47 0 N7N NAP 401 C 1 HETATM 42 C C4N NAP . . . I 2 -32.97 33.452 -14.743 1 58.3 0 C4N NAP 401 C 1 HETATM 43 C C5N NAP . . . I 2 -33.785 33.32 -15.846 1 57.4 0 C5N NAP 401 C 1 HETATM 44 C C6N NAP . . . I 2 -34.723 32.32 -15.89 1 59.97 0 C6N NAP 401 C 1 HETATM 45 P P2B NAP . . . I 2 -41.711 24.494 -4.324 1 59.77 0 P2B NAP 401 C 1 HETATM 46 O O1X NAP . . . I 2 -40.444 24.095 -3.606 1 61.65 0 O1X NAP 401 C 1 HETATM 47 O O2X NAP . . . I 2 -42.881 24.603 -3.381 1 59.16 0 O2X NAP 401 C 1 HETATM 48 O O3X NAP . . . I 2 -42.003 23.593 -5.513 1 53.28 0 O3X NAP 401 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 48 #