data_9FON # _model_server_result.job_id XO_pKyWFWi5pCI4o8PR4xw _model_server_result.datetime_utc '2025-06-26 12:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9FON # _exptl.entry_id 9FON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9FON _cell.length_a 119.543 _cell.length_b 119.543 _cell.length_c 101.804 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FON _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 179.3145 103.527275 67.869333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 290 A HIS 312 1_555 C FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 C FE HEM . A HEM 401 1_555 D N21 A1IER . A A1IER 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 B NE2 HIS 290 B HIS 312 1_555 E FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 E FE HEM . B HEM 401 1_555 F N21 A1IER . B A1IER 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 167 n n CHA C4D HEM doub 168 n n CHA HHA HEM sing 169 n n CHB C4A HEM sing 170 n n CHB C1B HEM doub 171 n n CHB HHB HEM sing 172 n n CHC C4B HEM sing 173 n n CHC C1C HEM doub 174 n n CHC HHC HEM sing 175 n n CHD C4C HEM doub 176 n n CHD C1D HEM sing 177 n n CHD HHD HEM sing 178 n n C1A C2A HEM doub 179 n y C1A NA HEM sing 180 n y C2A C3A HEM sing 181 n y C2A CAA HEM sing 182 n n C3A C4A HEM doub 183 n y C3A CMA HEM sing 184 n n C4A NA HEM sing 185 n y CMA HMA HEM sing 186 n n CMA HMAA HEM sing 187 n n CMA HMAB HEM sing 188 n n CAA CBA HEM sing 189 n n CAA HAA HEM sing 190 n n CAA HAAA HEM sing 191 n n CBA CGA HEM sing 192 n n CBA HBA HEM sing 193 n n CBA HBAA HEM sing 194 n n CGA O1A HEM doub 195 n n CGA O2A HEM sing 196 n n C1B C2B HEM sing 197 n n C1B NB HEM sing 198 n n C2B C3B HEM doub 199 n n C2B CMB HEM sing 200 n n C3B C4B HEM sing 201 n n C3B CAB HEM sing 202 n n C4B NB HEM doub 203 n n CMB HMB HEM sing 204 n n CMB HMBA HEM sing 205 n n CMB HMBB HEM sing 206 n n CAB CBB HEM doub 207 n n CAB HAB HEM sing 208 n n CBB HBB HEM sing 209 n n CBB HBBA HEM sing 210 n n C1C C2C HEM sing 211 n y C1C NC HEM sing 212 n y C2C C3C HEM doub 213 n y C2C CMC HEM sing 214 n n C3C C4C HEM sing 215 n y C3C CAC HEM sing 216 n n C4C NC HEM sing 217 n y CMC HMC HEM sing 218 n n CMC HMCA HEM sing 219 n n CMC HMCB HEM sing 220 n n CAC CBC HEM doub 221 n n CAC HAC HEM sing 222 n n CBC HBC HEM sing 223 n n CBC HBCA HEM sing 224 n n C1D C2D HEM sing 225 n n C1D ND HEM doub 226 n n C2D C3D HEM doub 227 n n C2D CMD HEM sing 228 n n C3D C4D HEM sing 229 n n C3D CAD HEM sing 230 n n C4D ND HEM sing 231 n n CMD HMD HEM sing 232 n n CMD HMDA HEM sing 233 n n CMD HMDB HEM sing 234 n n CAD CBD HEM sing 235 n n CAD HAD HEM sing 236 n n CAD HADA HEM sing 237 n n CBD CGD HEM sing 238 n n CBD HBD HEM sing 239 n n CBD HBDA HEM sing 240 n n CGD O1D HEM doub 241 n n CGD O2D HEM sing 242 n n O2A H2A HEM sing 243 n n O2D H2D HEM sing 244 n n FE NA HEM sing 245 n n FE NB HEM sing 246 n n FE NC HEM sing 247 n n FE ND HEM sing 248 n n # _atom_sites.entry_id 9FON _atom_sites.fract_transf_matrix[1][1] 0.008365 _atom_sites.fract_transf_matrix[1][2] 0.00483 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 401 401 HEM HEM . D 3 A1IER A 1 402 402 A1IER LIG . E 2 HEM B 1 401 401 HEM HEM . F 3 A1IER B 1 402 402 A1IER LIG . G 4 HOH A 1 501 114 HOH HOH . G 4 HOH A 2 502 43 HOH HOH . G 4 HOH A 3 503 55 HOH HOH . G 4 HOH A 4 504 115 HOH HOH . G 4 HOH A 5 505 12 HOH HOH . G 4 HOH A 6 506 119 HOH HOH . G 4 HOH A 7 507 3 HOH HOH . G 4 HOH A 8 508 56 HOH HOH . G 4 HOH A 9 509 65 HOH HOH . G 4 HOH A 10 510 87 HOH HOH . G 4 HOH A 11 511 120 HOH HOH . G 4 HOH A 12 512 41 HOH HOH . G 4 HOH A 13 513 10 HOH HOH . G 4 HOH A 14 514 22 HOH HOH . G 4 HOH A 15 515 19 HOH HOH . G 4 HOH A 16 516 83 HOH HOH . G 4 HOH A 17 517 13 HOH HOH . G 4 HOH A 18 518 39 HOH HOH . G 4 HOH A 19 519 89 HOH HOH . G 4 HOH A 20 520 97 HOH HOH . G 4 HOH A 21 521 118 HOH HOH . G 4 HOH A 22 522 116 HOH HOH . G 4 HOH A 23 523 92 HOH HOH . G 4 HOH A 24 524 117 HOH HOH . G 4 HOH A 25 525 45 HOH HOH . G 4 HOH A 26 526 49 HOH HOH . G 4 HOH A 27 527 18 HOH HOH . G 4 HOH A 28 528 86 HOH HOH . G 4 HOH A 29 529 75 HOH HOH . G 4 HOH A 30 530 14 HOH HOH . G 4 HOH A 31 531 32 HOH HOH . G 4 HOH A 32 532 24 HOH HOH . G 4 HOH A 33 533 107 HOH HOH . G 4 HOH A 34 534 15 HOH HOH . G 4 HOH A 35 535 29 HOH HOH . G 4 HOH A 36 536 37 HOH HOH . G 4 HOH A 37 537 121 HOH HOH . G 4 HOH A 38 538 74 HOH HOH . G 4 HOH A 39 539 71 HOH HOH . G 4 HOH A 40 540 17 HOH HOH . G 4 HOH A 41 541 31 HOH HOH . G 4 HOH A 42 542 108 HOH HOH . G 4 HOH A 43 543 36 HOH HOH . G 4 HOH A 44 544 66 HOH HOH . G 4 HOH A 45 545 6 HOH HOH . G 4 HOH A 46 546 69 HOH HOH . G 4 HOH A 47 547 101 HOH HOH . G 4 HOH A 48 548 109 HOH HOH . G 4 HOH A 49 549 106 HOH HOH . G 4 HOH A 50 550 99 HOH HOH . H 4 HOH B 1 501 122 HOH HOH . H 4 HOH B 2 502 7 HOH HOH . H 4 HOH B 3 503 46 HOH HOH . H 4 HOH B 4 504 11 HOH HOH . H 4 HOH B 5 505 80 HOH HOH . H 4 HOH B 6 506 57 HOH HOH . H 4 HOH B 7 507 77 HOH HOH . H 4 HOH B 8 508 91 HOH HOH . H 4 HOH B 9 509 50 HOH HOH . H 4 HOH B 10 510 105 HOH HOH . H 4 HOH B 11 511 48 HOH HOH . H 4 HOH B 12 512 73 HOH HOH . H 4 HOH B 13 513 16 HOH HOH . H 4 HOH B 14 514 4 HOH HOH . H 4 HOH B 15 515 59 HOH HOH . H 4 HOH B 16 516 40 HOH HOH . H 4 HOH B 17 517 30 HOH HOH . H 4 HOH B 18 518 90 HOH HOH . H 4 HOH B 19 519 9 HOH HOH . H 4 HOH B 20 520 2 HOH HOH . H 4 HOH B 21 521 78 HOH HOH . H 4 HOH B 22 522 1 HOH HOH . H 4 HOH B 23 523 20 HOH HOH . H 4 HOH B 24 524 98 HOH HOH . H 4 HOH B 25 525 125 HOH HOH . H 4 HOH B 26 526 34 HOH HOH . H 4 HOH B 27 527 5 HOH HOH . H 4 HOH B 28 528 27 HOH HOH . H 4 HOH B 29 529 28 HOH HOH . H 4 HOH B 30 530 25 HOH HOH . H 4 HOH B 31 531 111 HOH HOH . H 4 HOH B 32 532 63 HOH HOH . H 4 HOH B 33 533 104 HOH HOH . H 4 HOH B 34 534 72 HOH HOH . H 4 HOH B 35 535 64 HOH HOH . H 4 HOH B 36 536 23 HOH HOH . H 4 HOH B 37 537 44 HOH HOH . H 4 HOH B 38 538 8 HOH HOH . H 4 HOH B 39 539 76 HOH HOH . H 4 HOH B 40 540 53 HOH HOH . H 4 HOH B 41 541 100 HOH HOH . H 4 HOH B 42 542 52 HOH HOH . H 4 HOH B 43 543 79 HOH HOH . H 4 HOH B 44 544 95 HOH HOH . H 4 HOH B 45 545 54 HOH HOH . H 4 HOH B 46 546 51 HOH HOH . H 4 HOH B 47 547 81 HOH HOH . H 4 HOH B 48 548 84 HOH HOH . H 4 HOH B 49 549 67 HOH HOH . H 4 HOH B 50 550 35 HOH HOH . H 4 HOH B 51 551 102 HOH HOH . H 4 HOH B 52 552 88 HOH HOH . H 4 HOH B 53 553 124 HOH HOH . H 4 HOH B 54 554 103 HOH HOH . H 4 HOH B 55 555 123 HOH HOH . H 4 HOH B 56 556 38 HOH HOH . H 4 HOH B 57 557 68 HOH HOH . H 4 HOH B 58 558 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 83.59 69.115 9.364 1 44.46 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . C 2 81.288 73.049 11.061 1 44.32 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . C 2 83.998 72.91 15.105 1 42.85 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . C 2 86.474 69.177 13.273 1 43.06 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . C 2 82.695 70.219 9.467 1 45.21 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . C 2 81.78 70.639 8.418 1 46.88 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . C 2 81.102 71.742 8.907 1 46 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . C 2 81.638 71.994 10.234 1 44.76 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . C 2 79.995 72.519 8.26 1 46.07 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . C 2 81.681 70.033 7.043 1 48.89 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . C 2 82.616 70.706 6.04 1 51.08 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . C 2 82.089 72.008 5.502 1 53.34 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . C 2 82.643 73.09 5.686 1 54.02 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . C 2 80.957 71.87 4.816 1 54.14 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . C 2 81.836 73.382 12.328 1 43.97 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . C 2 81.394 74.499 13.149 1 43.62 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . C 2 82.162 74.437 14.293 1 43.36 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . C 2 83.048 73.311 14.166 1 43.37 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . C 2 80.309 75.469 12.785 1 43.81 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . C 2 82.11 75.317 15.469 1 43.26 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . C 2 82.069 76.629 15.553 1 43.05 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . C 2 84.927 71.85 14.969 1 42.6 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . C 2 85.938 71.508 15.954 1 42.46 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . C 2 86.655 70.467 15.392 1 42.34 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . C 2 86.07 70.182 14.123 1 42.61 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . C 2 86.101 72.164 17.29 1 42.35 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . C 2 87.823 69.76 15.923 1 41.59 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . C 2 89.017 69.591 15.383 1 41.08 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . C 2 85.904 68.822 12.03 1 43.23 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . C 2 86.313 67.674 11.245 1 43.46 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . C 2 85.453 67.613 10.172 1 43.72 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . C 2 84.572 68.764 10.285 1 43.88 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . C 2 87.509 66.817 11.521 1 43.16 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . C 2 85.321 66.452 9.227 1 43.09 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . C 2 84.405 65.392 9.829 1 42.95 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . C 2 84.152 64.174 8.983 1 42.9 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . C 2 83.53 63.217 9.411 1 42.55 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . C 2 84.635 64.213 7.769 1 43.25 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . C 2 82.587 71.042 10.546 1 44.36 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . C 2 82.824 72.678 12.947 1 43.6 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . C 2 85.014 71.043 13.883 1 42.89 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . C 2 84.874 69.475 11.438 1 42.92 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . C 2 83.8 71.02 12.217 1 43.17 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #