data_9FON # _model_server_result.job_id kfLfDgELpNRywy9Gn8W_rA _model_server_result.datetime_utc '2025-06-27 04:46:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 9FON # _exptl.entry_id 9FON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9FON _cell.length_a 119.543 _cell.length_b 119.543 _cell.length_c 101.804 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FON _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 179.3145 103.527275 67.869333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 290 A HIS 312 1_555 C FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 C FE HEM . A HEM 401 1_555 D N21 A1IER . A A1IER 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc3 B NE2 HIS 290 B HIS 312 1_555 E FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 E FE HEM . B HEM 401 1_555 F N21 A1IER . B A1IER 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 167 n n CHA C4D HEM doub 168 n n CHA HHA HEM sing 169 n n CHB C4A HEM sing 170 n n CHB C1B HEM doub 171 n n CHB HHB HEM sing 172 n n CHC C4B HEM sing 173 n n CHC C1C HEM doub 174 n n CHC HHC HEM sing 175 n n CHD C4C HEM doub 176 n n CHD C1D HEM sing 177 n n CHD HHD HEM sing 178 n n C1A C2A HEM doub 179 n y C1A NA HEM sing 180 n y C2A C3A HEM sing 181 n y C2A CAA HEM sing 182 n n C3A C4A HEM doub 183 n y C3A CMA HEM sing 184 n n C4A NA HEM sing 185 n y CMA HMA HEM sing 186 n n CMA HMAA HEM sing 187 n n CMA HMAB HEM sing 188 n n CAA CBA HEM sing 189 n n CAA HAA HEM sing 190 n n CAA HAAA HEM sing 191 n n CBA CGA HEM sing 192 n n CBA HBA HEM sing 193 n n CBA HBAA HEM sing 194 n n CGA O1A HEM doub 195 n n CGA O2A HEM sing 196 n n C1B C2B HEM sing 197 n n C1B NB HEM sing 198 n n C2B C3B HEM doub 199 n n C2B CMB HEM sing 200 n n C3B C4B HEM sing 201 n n C3B CAB HEM sing 202 n n C4B NB HEM doub 203 n n CMB HMB HEM sing 204 n n CMB HMBA HEM sing 205 n n CMB HMBB HEM sing 206 n n CAB CBB HEM doub 207 n n CAB HAB HEM sing 208 n n CBB HBB HEM sing 209 n n CBB HBBA HEM sing 210 n n C1C C2C HEM sing 211 n y C1C NC HEM sing 212 n y C2C C3C HEM doub 213 n y C2C CMC HEM sing 214 n n C3C C4C HEM sing 215 n y C3C CAC HEM sing 216 n n C4C NC HEM sing 217 n y CMC HMC HEM sing 218 n n CMC HMCA HEM sing 219 n n CMC HMCB HEM sing 220 n n CAC CBC HEM doub 221 n n CAC HAC HEM sing 222 n n CBC HBC HEM sing 223 n n CBC HBCA HEM sing 224 n n C1D C2D HEM sing 225 n n C1D ND HEM doub 226 n n C2D C3D HEM doub 227 n n C2D CMD HEM sing 228 n n C3D C4D HEM sing 229 n n C3D CAD HEM sing 230 n n C4D ND HEM sing 231 n n CMD HMD HEM sing 232 n n CMD HMDA HEM sing 233 n n CMD HMDB HEM sing 234 n n CAD CBD HEM sing 235 n n CAD HAD HEM sing 236 n n CAD HADA HEM sing 237 n n CBD CGD HEM sing 238 n n CBD HBD HEM sing 239 n n CBD HBDA HEM sing 240 n n CGD O1D HEM doub 241 n n CGD O2D HEM sing 242 n n O2A H2A HEM sing 243 n n O2D H2D HEM sing 244 n n FE NA HEM sing 245 n n FE NB HEM sing 246 n n FE NC HEM sing 247 n n FE ND HEM sing 248 n n # _atom_sites.entry_id 9FON _atom_sites.fract_transf_matrix[1][1] 0.008365 _atom_sites.fract_transf_matrix[1][2] 0.00483 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 401 401 HEM HEM . D 3 A1IER A 1 402 402 A1IER LIG . E 2 HEM B 1 401 401 HEM HEM . F 3 A1IER B 1 402 402 A1IER LIG . G 4 HOH A 1 501 114 HOH HOH . G 4 HOH A 2 502 43 HOH HOH . G 4 HOH A 3 503 55 HOH HOH . G 4 HOH A 4 504 115 HOH HOH . G 4 HOH A 5 505 12 HOH HOH . G 4 HOH A 6 506 119 HOH HOH . G 4 HOH A 7 507 3 HOH HOH . G 4 HOH A 8 508 56 HOH HOH . G 4 HOH A 9 509 65 HOH HOH . G 4 HOH A 10 510 87 HOH HOH . G 4 HOH A 11 511 120 HOH HOH . G 4 HOH A 12 512 41 HOH HOH . G 4 HOH A 13 513 10 HOH HOH . G 4 HOH A 14 514 22 HOH HOH . G 4 HOH A 15 515 19 HOH HOH . G 4 HOH A 16 516 83 HOH HOH . G 4 HOH A 17 517 13 HOH HOH . G 4 HOH A 18 518 39 HOH HOH . G 4 HOH A 19 519 89 HOH HOH . G 4 HOH A 20 520 97 HOH HOH . G 4 HOH A 21 521 118 HOH HOH . G 4 HOH A 22 522 116 HOH HOH . G 4 HOH A 23 523 92 HOH HOH . G 4 HOH A 24 524 117 HOH HOH . G 4 HOH A 25 525 45 HOH HOH . G 4 HOH A 26 526 49 HOH HOH . G 4 HOH A 27 527 18 HOH HOH . G 4 HOH A 28 528 86 HOH HOH . G 4 HOH A 29 529 75 HOH HOH . G 4 HOH A 30 530 14 HOH HOH . G 4 HOH A 31 531 32 HOH HOH . G 4 HOH A 32 532 24 HOH HOH . G 4 HOH A 33 533 107 HOH HOH . G 4 HOH A 34 534 15 HOH HOH . G 4 HOH A 35 535 29 HOH HOH . G 4 HOH A 36 536 37 HOH HOH . G 4 HOH A 37 537 121 HOH HOH . G 4 HOH A 38 538 74 HOH HOH . G 4 HOH A 39 539 71 HOH HOH . G 4 HOH A 40 540 17 HOH HOH . G 4 HOH A 41 541 31 HOH HOH . G 4 HOH A 42 542 108 HOH HOH . G 4 HOH A 43 543 36 HOH HOH . G 4 HOH A 44 544 66 HOH HOH . G 4 HOH A 45 545 6 HOH HOH . G 4 HOH A 46 546 69 HOH HOH . G 4 HOH A 47 547 101 HOH HOH . G 4 HOH A 48 548 109 HOH HOH . G 4 HOH A 49 549 106 HOH HOH . G 4 HOH A 50 550 99 HOH HOH . H 4 HOH B 1 501 122 HOH HOH . H 4 HOH B 2 502 7 HOH HOH . H 4 HOH B 3 503 46 HOH HOH . H 4 HOH B 4 504 11 HOH HOH . H 4 HOH B 5 505 80 HOH HOH . H 4 HOH B 6 506 57 HOH HOH . H 4 HOH B 7 507 77 HOH HOH . H 4 HOH B 8 508 91 HOH HOH . H 4 HOH B 9 509 50 HOH HOH . H 4 HOH B 10 510 105 HOH HOH . H 4 HOH B 11 511 48 HOH HOH . H 4 HOH B 12 512 73 HOH HOH . H 4 HOH B 13 513 16 HOH HOH . H 4 HOH B 14 514 4 HOH HOH . H 4 HOH B 15 515 59 HOH HOH . H 4 HOH B 16 516 40 HOH HOH . H 4 HOH B 17 517 30 HOH HOH . H 4 HOH B 18 518 90 HOH HOH . H 4 HOH B 19 519 9 HOH HOH . H 4 HOH B 20 520 2 HOH HOH . H 4 HOH B 21 521 78 HOH HOH . H 4 HOH B 22 522 1 HOH HOH . H 4 HOH B 23 523 20 HOH HOH . H 4 HOH B 24 524 98 HOH HOH . H 4 HOH B 25 525 125 HOH HOH . H 4 HOH B 26 526 34 HOH HOH . H 4 HOH B 27 527 5 HOH HOH . H 4 HOH B 28 528 27 HOH HOH . H 4 HOH B 29 529 28 HOH HOH . H 4 HOH B 30 530 25 HOH HOH . H 4 HOH B 31 531 111 HOH HOH . H 4 HOH B 32 532 63 HOH HOH . H 4 HOH B 33 533 104 HOH HOH . H 4 HOH B 34 534 72 HOH HOH . H 4 HOH B 35 535 64 HOH HOH . H 4 HOH B 36 536 23 HOH HOH . H 4 HOH B 37 537 44 HOH HOH . H 4 HOH B 38 538 8 HOH HOH . H 4 HOH B 39 539 76 HOH HOH . H 4 HOH B 40 540 53 HOH HOH . H 4 HOH B 41 541 100 HOH HOH . H 4 HOH B 42 542 52 HOH HOH . H 4 HOH B 43 543 79 HOH HOH . H 4 HOH B 44 544 95 HOH HOH . H 4 HOH B 45 545 54 HOH HOH . H 4 HOH B 46 546 51 HOH HOH . H 4 HOH B 47 547 81 HOH HOH . H 4 HOH B 48 548 84 HOH HOH . H 4 HOH B 49 549 67 HOH HOH . H 4 HOH B 50 550 35 HOH HOH . H 4 HOH B 51 551 102 HOH HOH . H 4 HOH B 52 552 88 HOH HOH . H 4 HOH B 53 553 124 HOH HOH . H 4 HOH B 54 554 103 HOH HOH . H 4 HOH B 55 555 123 HOH HOH . H 4 HOH B 56 556 38 HOH HOH . H 4 HOH B 57 557 68 HOH HOH . H 4 HOH B 58 558 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 64.057 48.648 27.531 1 30.91 ? CHA HEM 401 B 1 HETATM 2 C CHB HEM . . . E 2 67.697 45.479 28.177 1 30.5 ? CHB HEM 401 B 1 HETATM 3 C CHC HEM . . . E 2 69.372 48.179 31.856 1 29.54 ? CHC HEM 401 B 1 HETATM 4 C CHD HEM . . . E 2 65.573 51.133 31.409 1 31.19 ? CHD HEM 401 B 1 HETATM 5 C C1A HEM . . . E 2 64.908 47.52 27.377 1 31.41 ? C1A HEM 401 B 1 HETATM 6 C C2A HEM . . . E 2 64.684 46.448 26.427 1 32.45 ? C2A HEM 401 B 1 HETATM 7 C C3A HEM . . . E 2 65.733 45.565 26.576 1 31.74 ? C3A HEM 401 B 1 HETATM 8 C C4A HEM . . . E 2 66.562 46.092 27.643 1 31.04 ? C4A HEM 401 B 1 HETATM 9 C CMA HEM . . . E 2 66.021 44.319 25.793 1 31.78 ? CMA HEM 401 B 1 HETATM 10 C CAA HEM . . . E 2 63.474 46.31 25.544 1 33.82 ? CAA HEM 401 B 1 HETATM 11 C CBA HEM . . . E 2 62.368 45.492 26.199 1 35.47 ? CBA HEM 401 B 1 HETATM 12 C CGA HEM . . . E 2 62.597 44.005 26.147 1 37.61 ? CGA HEM 401 B 1 HETATM 13 O O1A HEM . . . E 2 62.729 43.302 27.143 1 38.44 ? O1A HEM 401 B 1 HETATM 14 O O2A HEM . . . E 2 62.657 43.521 24.931 1 38.11 ? O2A HEM 401 B 1 HETATM 15 C C1B HEM . . . E 2 68.486 45.927 29.262 1 30.18 ? C1B HEM 401 B 1 HETATM 16 C C2B HEM . . . E 2 69.681 45.254 29.738 1 30.16 ? C2B HEM 401 B 1 HETATM 17 C C3B HEM . . . E 2 70.16 46.05 30.776 1 29.95 ? C3B HEM 401 B 1 HETATM 18 C C4B HEM . . . E 2 69.262 47.163 30.918 1 29.62 ? C4B HEM 401 B 1 HETATM 19 C CMB HEM . . . E 2 70.23 43.97 29.189 1 29.77 ? CMB HEM 401 B 1 HETATM 20 C CAB HEM . . . E 2 71.353 45.834 31.609 1 29.36 ? CAB HEM 401 B 1 HETATM 21 C CBB HEM . . . E 2 71.799 44.73 32.19 1 28.55 ? CBB HEM 401 B 1 HETATM 22 C C1C HEM . . . E 2 68.468 49.245 32.068 1 30.11 ? C1C HEM 401 B 1 HETATM 23 C C2C HEM . . . E 2 68.597 50.253 33.118 1 30.3 ? C2C HEM 401 B 1 HETATM 24 C C3C HEM . . . E 2 67.485 51.056 32.989 1 30.56 ? C3C HEM 401 B 1 HETATM 25 C C4C HEM . . . E 2 66.724 50.557 31.888 1 30.64 ? C4C HEM 401 B 1 HETATM 26 C CMC HEM . . . E 2 69.736 50.359 34.09 1 29.5 ? CMC HEM 401 B 1 HETATM 27 C CAC HEM . . . E 2 67.11 52.216 33.802 1 30.71 ? CAC HEM 401 B 1 HETATM 28 C CBC HEM . . . E 2 65.987 52.438 34.455 1 30.78 ? CBC HEM 401 B 1 HETATM 29 C C1D HEM . . . E 2 64.809 50.716 30.303 1 31.29 ? C1D HEM 401 B 1 HETATM 30 C C2D HEM . . . E 2 63.655 51.429 29.793 1 31.35 ? C2D HEM 401 B 1 HETATM 31 C C3D HEM . . . E 2 63.266 50.766 28.648 1 31.28 ? C3D HEM 401 B 1 HETATM 32 C C4D HEM . . . E 2 64.144 49.617 28.52 1 31.14 ? C4D HEM 401 B 1 HETATM 33 C CMD HEM . . . E 2 62.986 52.592 30.462 1 30.82 ? CMD HEM 401 B 1 HETATM 34 C CAD HEM . . . E 2 62.304 51.279 27.615 1 31 ? CAD HEM 401 B 1 HETATM 35 C CBD HEM . . . E 2 63.013 52.244 26.673 1 31.2 ? CBD HEM 401 B 1 HETATM 36 C CGD HEM . . . E 2 62.182 52.818 25.56 1 31.94 ? CGD HEM 401 B 1 HETATM 37 O O1D HEM . . . E 2 62.626 53.656 24.806 1 32.45 ? O1D HEM 401 B 1 HETATM 38 O O2D HEM . . . E 2 60.971 52.365 25.454 1 32.41 ? O2D HEM 401 B 1 HETATM 39 N NA HEM . . . E 2 66.038 47.284 28.092 1 30.85 ? NA HEM 401 B 1 HETATM 40 N NB HEM . . . E 2 68.243 47.06 29.977 1 29.96 ? NB HEM 401 B 1 HETATM 41 N NC HEM . . . E 2 67.339 49.447 31.335 1 30.56 ? NC HEM 401 B 1 HETATM 42 N ND HEM . . . E 2 65.083 49.625 29.545 1 31.07 ? ND HEM 401 B 1 HETATM 43 FE FE HEM . . . E 2 66.695 48.379 29.674 1 30.12 ? FE HEM 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #