data_9FOS # _model_server_result.job_id vffpkCmNJCjH4DIv5KrMtw _model_server_result.datetime_utc '2025-07-07 20:56:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 9FOS # _exptl.entry_id 9FOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9FOS _cell.length_a 117.87 _cell.length_b 117.87 _cell.length_c 82.175 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 187 A CYS 167 1_555 A SG CYS 708 A CYS 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? covale ? covale1 A SG CYS 654 A CYS 634 1_555 C CO DMO . A DMO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? covale ? covale2 B C4A PLP . A PLP 801 1_555 C NO DMO . A DMO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 281 n y N1 C6 PLP sing 282 n y C2 C2A PLP sing 283 n n C2 C3 PLP sing 284 n y C2A H2A1 PLP sing 285 n n C2A H2A2 PLP sing 286 n n C2A H2A3 PLP sing 287 n n C3 O3 PLP sing 288 n n C3 C4 PLP doub 289 n y O3 HO3 PLP sing 290 n n C4 C4A PLP sing 291 n n C4 C5 PLP sing 292 n y C4A O4A PLP doub 293 n n C4A H4A PLP sing 294 n n C5 C6 PLP doub 295 n y C5 C5A PLP sing 296 n n C6 H6 PLP sing 297 n n C5A O4P PLP sing 298 n n C5A H5A1 PLP sing 299 n n C5A H5A2 PLP sing 300 n n O4P P PLP sing 301 n n P O1P PLP doub 302 n n P O2P PLP sing 303 n n P O3P PLP sing 304 n n O2P HOP2 PLP sing 305 n n O3P HOP3 PLP sing 306 n n # _atom_sites.entry_id 9FOS _atom_sites.fract_transf_matrix[1][1] 0.008484 _atom_sites.fract_transf_matrix[1][2] 0.004898 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 801 801 PLP PLP . C 3 DMO A 1 802 802 DMO DMO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 9.492 44.487 -14.596 1 125.8 ? N1 PLP 801 A 1 HETATM 2 C C2 PLP . . . B 2 10.744 44.272 -15.009 1 140.29 ? C2 PLP 801 A 1 HETATM 3 C C2A PLP . . . B 2 10.99 43.925 -16.449 1 126.98 ? C2A PLP 801 A 1 HETATM 4 C C3 PLP . . . B 2 11.807 44.423 -14.092 1 161.58 ? C3 PLP 801 A 1 HETATM 5 O O3 PLP . . . B 2 13.148 44.272 -14.612 1 102.62 ? O3 PLP 801 A 1 HETATM 6 C C4 PLP . . . B 2 11.451 44.751 -12.732 1 177.29 ? C4 PLP 801 A 1 HETATM 7 C C4A PLP . . . B 2 12.536 44.92 -11.766 1 182.17 ? C4A PLP 801 A 1 HETATM 8 C C5 PLP . . . B 2 10.094 44.962 -12.298 1 139.43 ? C5 PLP 801 A 1 HETATM 9 C C6 PLP . . . B 2 9.173 44.786 -13.302 1 135.23 ? C6 PLP 801 A 1 HETATM 10 C C5A PLP . . . B 2 9.675 45.302 -10.838 1 112.35 ? C5A PLP 801 A 1 HETATM 11 O O4P PLP . . . B 2 8.556 46.19 -10.35 1 86.67 ? O4P PLP 801 A 1 HETATM 12 P P PLP . . . B 2 8.362 47.219 -8.877 1 114.09 ? P PLP 801 A 1 HETATM 13 O O1P PLP . . . B 2 9.154 48.46 -8.905 1 115.61 ? O1P PLP 801 A 1 HETATM 14 O O2P PLP . . . B 2 8.997 46.477 -7.801 1 77.37 ? O2P PLP 801 A 1 HETATM 15 O O3P PLP . . . B 2 6.885 47.718 -8.489 1 135.43 ? O3P PLP 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #