data_9FOW # _model_server_result.job_id oJ-0TYM31lbLS7VORgRjKQ _model_server_result.datetime_utc '2024-10-18 05:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":203}' # _entry.id 9FOW # _exptl.entry_id 9FOW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9FOW _cell.length_a 143.116 _cell.length_b 143.116 _cell.length_c 43.556 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FOW _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,H,N 1 1 B,D,I,J,K,L,O 2 1 C,E,M,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N ? 5 K N N ? 5 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 3 4 1 FUC NAG C1 O1 . O3 HO3 . sing 7 ? 3 5 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG B 201 NAG 2 n D FUC 2 D 2 FUC B 205 FUC 2 n D NAG 3 D 3 NAG B 206 NAG 2 n D FUC 4 D 4 FUC B 204 FUC 3 n E NAG 1 E 1 NAG C 201 NAG 3 n E NAG 2 E 2 NAG C 202 NAG 3 n E BMA 3 E 3 BMA C 206 BMA 3 n E FUC 4 E 4 FUC C 203 FUC 3 n E FUC 5 E 5 FUC C 204 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 70 A CYS 92 1_555 A SG CYS 111 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 B SG CYS 70 B CYS 92 1_555 B SG CYS 111 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 C SG CYS 70 C CYS 92 1_555 C SG CYS 111 C CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 89 A ASN 111 1_555 F C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B ND2 ASN 89 B ASN 111 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 C ND2 ASN 89 C ASN 111 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 D O3 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale6 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale8 E O3 NAG . E NAG 1 1_555 E C1 FUC . E FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale10 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 182 n n C1 C2 GOL sing 183 n n C1 H11 GOL sing 184 n n C1 H12 GOL sing 185 n n O1 HO1 GOL sing 186 n n C2 O2 GOL sing 187 n n C2 C3 GOL sing 188 n n C2 H2 GOL sing 189 n n O2 HO2 GOL sing 190 n n C3 O3 GOL sing 191 n n C3 H31 GOL sing 192 n n C3 H32 GOL sing 193 n n O3 HO3 GOL sing 194 n n # _atom_sites.entry_id 9FOW _atom_sites.fract_transf_matrix[1][1] 0.006987 _atom_sites.fract_transf_matrix[1][2] 0.004034 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 201 201 NAG NAG . G 5 GOL A 1 202 211 GOL GOL . H 6 ACT A 1 203 212 ACT ACT . I 5 GOL B 1 201 202 GOL GOL . J 6 ACT B 1 202 207 ACT ACT . K 5 GOL B 1 203 208 GOL GOL . L 6 ACT B 1 204 208 ACT ACT . M 5 GOL C 1 201 207 GOL GOL . N 7 HOH A 1 301 4 HOH HOH . N 7 HOH A 2 302 67 HOH HOH . N 7 HOH A 3 303 204 HOH HOH . N 7 HOH A 4 304 2 HOH HOH . N 7 HOH A 5 305 39 HOH HOH . N 7 HOH A 6 306 25 HOH HOH . N 7 HOH A 7 307 78 HOH HOH . N 7 HOH A 8 308 172 HOH HOH . N 7 HOH A 9 309 162 HOH HOH . N 7 HOH A 10 310 75 HOH HOH . N 7 HOH A 11 311 202 HOH HOH . N 7 HOH A 12 312 178 HOH HOH . N 7 HOH A 13 313 173 HOH HOH . N 7 HOH A 14 314 198 HOH HOH . N 7 HOH A 15 315 40 HOH HOH . N 7 HOH A 16 316 12 HOH HOH . N 7 HOH A 17 317 196 HOH HOH . N 7 HOH A 18 318 161 HOH HOH . N 7 HOH A 19 319 84 HOH HOH . N 7 HOH A 20 320 79 HOH HOH . N 7 HOH A 21 321 90 HOH HOH . N 7 HOH A 22 322 49 HOH HOH . N 7 HOH A 23 323 65 HOH HOH . N 7 HOH A 24 324 43 HOH HOH . N 7 HOH A 25 325 98 HOH HOH . N 7 HOH A 26 326 17 HOH HOH . N 7 HOH A 27 327 13 HOH HOH . N 7 HOH A 28 328 27 HOH HOH . N 7 HOH A 29 329 15 HOH HOH . N 7 HOH A 30 330 30 HOH HOH . N 7 HOH A 31 331 26 HOH HOH . N 7 HOH A 32 332 18 HOH HOH . N 7 HOH A 33 333 58 HOH HOH . N 7 HOH A 34 334 82 HOH HOH . N 7 HOH A 35 335 118 HOH HOH . N 7 HOH A 36 336 197 HOH HOH . N 7 HOH A 37 337 94 HOH HOH . N 7 HOH A 38 338 139 HOH HOH . N 7 HOH A 39 339 135 HOH HOH . O 7 HOH B 1 301 123 HOH HOH . O 7 HOH B 2 302 31 HOH HOH . O 7 HOH B 3 303 192 HOH HOH . O 7 HOH B 4 304 151 HOH HOH . O 7 HOH B 5 305 185 HOH HOH . O 7 HOH B 6 306 5 HOH HOH . O 7 HOH B 7 307 7 HOH HOH . O 7 HOH B 8 308 181 HOH HOH . O 7 HOH B 9 309 88 HOH HOH . O 7 HOH B 10 310 163 HOH HOH . O 7 HOH B 11 311 69 HOH HOH . O 7 HOH B 12 312 106 HOH HOH . O 7 HOH B 13 313 130 HOH HOH . O 7 HOH B 14 314 122 HOH HOH . O 7 HOH B 15 315 85 HOH HOH . O 7 HOH B 16 316 28 HOH HOH . O 7 HOH B 17 317 10 HOH HOH . O 7 HOH B 18 318 73 HOH HOH . O 7 HOH B 19 319 160 HOH HOH . O 7 HOH B 20 320 141 HOH HOH . O 7 HOH B 21 321 70 HOH HOH . O 7 HOH B 22 322 140 HOH HOH . O 7 HOH B 23 323 32 HOH HOH . O 7 HOH B 24 324 38 HOH HOH . O 7 HOH B 25 325 184 HOH HOH . O 7 HOH B 26 326 80 HOH HOH . O 7 HOH B 27 327 114 HOH HOH . O 7 HOH B 28 328 63 HOH HOH . O 7 HOH B 29 329 83 HOH HOH . O 7 HOH B 30 330 21 HOH HOH . O 7 HOH B 31 331 86 HOH HOH . O 7 HOH B 32 332 137 HOH HOH . O 7 HOH B 33 333 61 HOH HOH . O 7 HOH B 34 334 112 HOH HOH . O 7 HOH B 35 335 81 HOH HOH . O 7 HOH B 36 336 120 HOH HOH . O 7 HOH B 37 337 91 HOH HOH . P 7 HOH C 1 301 200 HOH HOH . P 7 HOH C 2 302 203 HOH HOH . P 7 HOH C 3 303 42 HOH HOH . P 7 HOH C 4 304 29 HOH HOH . P 7 HOH C 5 305 189 HOH HOH . P 7 HOH C 6 306 201 HOH HOH . P 7 HOH C 7 307 128 HOH HOH . P 7 HOH C 8 308 57 HOH HOH . P 7 HOH C 9 309 36 HOH HOH . P 7 HOH C 10 310 16 HOH HOH . P 7 HOH C 11 311 6 HOH HOH . P 7 HOH C 12 312 129 HOH HOH . P 7 HOH C 13 313 87 HOH HOH . P 7 HOH C 14 314 169 HOH HOH . P 7 HOH C 15 315 60 HOH HOH . P 7 HOH C 16 316 199 HOH HOH . P 7 HOH C 17 317 170 HOH HOH . P 7 HOH C 18 318 9 HOH HOH . P 7 HOH C 19 319 34 HOH HOH . P 7 HOH C 20 320 45 HOH HOH . P 7 HOH C 21 321 72 HOH HOH . P 7 HOH C 22 322 150 HOH HOH . P 7 HOH C 23 323 77 HOH HOH . P 7 HOH C 24 324 44 HOH HOH . P 7 HOH C 25 325 37 HOH HOH . P 7 HOH C 26 326 1 HOH HOH . P 7 HOH C 27 327 193 HOH HOH . P 7 HOH C 28 328 149 HOH HOH . P 7 HOH C 29 329 3 HOH HOH . P 7 HOH C 30 330 89 HOH HOH . P 7 HOH C 31 331 54 HOH HOH . P 7 HOH C 32 332 95 HOH HOH . P 7 HOH C 33 333 59 HOH HOH . P 7 HOH C 34 334 76 HOH HOH . P 7 HOH C 35 335 104 HOH HOH . P 7 HOH C 36 336 131 HOH HOH . P 7 HOH C 37 337 97 HOH HOH . P 7 HOH C 38 338 205 HOH HOH . P 7 HOH C 39 339 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 61.219 -65.362 0.095 1 72.23 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . K 5 60.4 -64.418 -0.589 1 71.51 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . K 5 62.4 -64.688 0.758 1 73.1 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . K 5 62.055 -63.346 1.123 1 73.55 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . K 5 62.901 -65.447 1.97 1 73.53 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . K 5 62.086 -65.215 3.113 1 73.57 ? O3 GOL 203 B 1 HETATM 7 H H11 GOL . . . K 5 61.566 -66.087 -0.644 1 72.23 ? H11 GOL 203 B 1 HETATM 8 H H12 GOL . . . K 5 60.602 -65.877 0.836 1 72.24 ? H12 GOL 203 B 1 HETATM 9 H HO1 GOL . . . K 5 59.844 -63.966 0.069 1 71.5 ? HO1 GOL 203 B 1 HETATM 10 H H2 GOL . . . K 5 63.218 -64.603 0.043 1 73.09 ? H2 GOL 203 B 1 HETATM 11 H HO2 GOL . . . K 5 61.317 -63.372 1.758 1 73.55 ? HO2 GOL 203 B 1 HETATM 12 H H31 GOL . . . K 5 63.918 -65.134 2.223 1 73.53 ? H31 GOL 203 B 1 HETATM 13 H H32 GOL . . . K 5 62.896 -66.523 1.776 1 73.53 ? H32 GOL 203 B 1 HETATM 14 H HO3 GOL . . . K 5 62.555 -65.576 3.884 1 73.57 ? HO3 GOL 203 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #