data_9FRF # _model_server_result.job_id vDAw5g-H_FD9rzW9mqpnzA _model_server_result.datetime_utc '2025-08-21 04:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9frf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":601}' # _entry.id 9FRF # _exptl.entry_id 9FRF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 119.119 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(R)-amino-3-hydroxybutanoic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FRF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 P N N ? 2 X N N ? 2 FA N N ? 2 NA N N # _chem_comp.formula 'C4 H9 N O3' _chem_comp.formula_weight 119.119 _chem_comp.id A1IFF _chem_comp.mon_nstd_flag . _chem_comp.name '(R)-amino-3-hydroxybutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (R)-GABOB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 C6 A1IFF doub 1 n n C6 C1 A1IFF sing 2 n n C6 O8 A1IFF sing 3 n n C3 C2 A1IFF sing 4 n n C3 N4 A1IFF sing 5 n n C1 C2 A1IFF sing 6 n n C2 O5 A1IFF sing 7 n n C1 H1 A1IFF sing 8 n n C1 H2 A1IFF sing 9 n n C2 H3 A1IFF sing 10 n n C3 H4 A1IFF sing 11 n n C3 H5 A1IFF sing 12 n n N4 H6 A1IFF sing 13 n n N4 H7 A1IFF sing 14 n n O5 H9 A1IFF sing 15 n n O8 H10 A1IFF sing 16 n n # _atom_sites.entry_id 9FRF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 A1IFF A 1 601 601 A1IFF RGA . G 3 NAG A 1 602 602 NAG NAG . H 3 NAG A 1 603 603 NAG NAG . I 4 D10 A 1 604 701 D10 D10 . J 5 OCT A 1 605 702 OCT OCT . K 6 HEX A 1 606 703 HEX HEX . L 5 OCT A 1 607 704 OCT OCT . M 6 HEX A 1 608 705 HEX HEX . N 7 CL A 1 609 1 CL CL . O 7 CL A 1 610 2 CL CL . P 2 A1IFF E 1 601 601 A1IFF RGA . Q 3 NAG E 1 602 602 NAG NAG . R 3 NAG E 1 603 603 NAG NAG . S 4 D10 E 1 604 701 D10 D10 . T 5 OCT E 1 605 702 OCT OCT . U 6 HEX E 1 606 703 HEX HEX . V 5 OCT E 1 607 704 OCT OCT . W 6 HEX E 1 608 705 HEX HEX . X 2 A1IFF B 1 601 601 A1IFF RGA . Y 3 NAG B 1 602 602 NAG NAG . Z 3 NAG B 1 603 603 NAG NAG . AA 4 D10 B 1 604 701 D10 D10 . BA 5 OCT B 1 605 702 OCT OCT . CA 6 HEX B 1 606 703 HEX HEX . DA 5 OCT B 1 607 704 OCT OCT . EA 6 HEX B 1 608 705 HEX HEX . FA 2 A1IFF C 1 601 601 A1IFF RGA . GA 3 NAG C 1 602 602 NAG NAG . HA 3 NAG C 1 603 603 NAG NAG . IA 4 D10 C 1 604 701 D10 D10 . JA 5 OCT C 1 605 702 OCT OCT . KA 6 HEX C 1 606 703 HEX HEX . LA 5 OCT C 1 607 704 OCT OCT . MA 6 HEX C 1 608 705 HEX HEX . NA 2 A1IFF D 1 601 601 A1IFF RGA . OA 3 NAG D 1 602 602 NAG NAG . PA 3 NAG D 1 603 603 NAG NAG . QA 4 D10 D 1 604 701 D10 D10 . RA 5 OCT D 1 605 702 OCT OCT . SA 6 HEX D 1 606 703 HEX HEX . TA 5 OCT D 1 607 704 OCT OCT . UA 6 HEX D 1 608 705 HEX HEX . VA 8 HOH A 1 701 902 HOH HOH . VA 8 HOH A 2 702 903 HOH HOH . VA 8 HOH A 3 703 901 HOH HOH . VA 8 HOH A 4 704 920 HOH HOH . VA 8 HOH A 5 705 904 HOH HOH . VA 8 HOH A 6 706 922 HOH HOH . VA 8 HOH A 7 707 917 HOH HOH . VA 8 HOH A 8 708 915 HOH HOH . VA 8 HOH A 9 709 905 HOH HOH . VA 8 HOH A 10 710 913 HOH HOH . VA 8 HOH A 11 711 914 HOH HOH . WA 8 HOH E 1 701 902 HOH HOH . WA 8 HOH E 2 702 903 HOH HOH . WA 8 HOH E 3 703 901 HOH HOH . WA 8 HOH E 4 704 920 HOH HOH . WA 8 HOH E 5 705 904 HOH HOH . WA 8 HOH E 6 706 922 HOH HOH . WA 8 HOH E 7 707 917 HOH HOH . WA 8 HOH E 8 708 915 HOH HOH . WA 8 HOH E 9 709 905 HOH HOH . WA 8 HOH E 10 710 913 HOH HOH . WA 8 HOH E 11 711 914 HOH HOH . XA 8 HOH B 1 701 902 HOH HOH . XA 8 HOH B 2 702 903 HOH HOH . XA 8 HOH B 3 703 901 HOH HOH . XA 8 HOH B 4 704 904 HOH HOH . XA 8 HOH B 5 705 920 HOH HOH . XA 8 HOH B 6 706 922 HOH HOH . XA 8 HOH B 7 707 917 HOH HOH . XA 8 HOH B 8 708 915 HOH HOH . XA 8 HOH B 9 709 905 HOH HOH . XA 8 HOH B 10 710 913 HOH HOH . XA 8 HOH B 11 711 914 HOH HOH . YA 8 HOH C 1 701 902 HOH HOH . YA 8 HOH C 2 702 903 HOH HOH . YA 8 HOH C 3 703 901 HOH HOH . YA 8 HOH C 4 704 920 HOH HOH . YA 8 HOH C 5 705 904 HOH HOH . YA 8 HOH C 6 706 922 HOH HOH . YA 8 HOH C 7 707 917 HOH HOH . YA 8 HOH C 8 708 915 HOH HOH . YA 8 HOH C 9 709 905 HOH HOH . YA 8 HOH C 10 710 913 HOH HOH . YA 8 HOH C 11 711 914 HOH HOH . ZA 8 HOH D 1 701 902 HOH HOH . ZA 8 HOH D 2 702 903 HOH HOH . ZA 8 HOH D 3 703 901 HOH HOH . ZA 8 HOH D 4 704 920 HOH HOH . ZA 8 HOH D 5 705 904 HOH HOH . ZA 8 HOH D 6 706 922 HOH HOH . ZA 8 HOH D 7 707 917 HOH HOH . ZA 8 HOH D 8 708 915 HOH HOH . ZA 8 HOH D 9 709 905 HOH HOH . ZA 8 HOH D 10 710 913 HOH HOH . ZA 8 HOH D 11 711 914 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IFF . . . P 2 138.357 116.055 192.429 1 27.22 ? C1 A1IFF 601 E 1 HETATM 2 C C2 A1IFF . . . P 2 137.076 115.245 192.268 1 27.6 ? C2 A1IFF 601 E 1 HETATM 3 C C3 A1IFF . . . P 2 135.906 116.217 192.367 1 23.99 ? C3 A1IFF 601 E 1 HETATM 4 C C6 A1IFF . . . P 2 139.567 115.131 192.462 1 29.43 ? C6 A1IFF 601 E 1 HETATM 5 O O7 A1IFF . . . P 2 139.56 114.12 191.731 1 33.59 ? O7 A1IFF 601 E 1 HETATM 6 N N4 A1IFF . . . P 2 134.622 115.477 192.452 1 22.2 ? N4 A1IFF 601 E 1 HETATM 7 O O5 A1IFF . . . P 2 136.987 114.297 193.331 1 32.19 ? O5 A1IFF 601 E 1 HETATM 8 O O8 A1IFF . . . P 2 140.506 115.448 193.229 1 28.91 ? O8 A1IFF 601 E 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 573 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 8 #