data_9FRG
#
_model_server_result.job_id            tH4cVl76xP59Jbep5zNrwQ 
_model_server_result.datetime_utc      '2025-07-30 16:06:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9frg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":607}' 
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_entry.id    9FRG 
#
_exptl.entry_id    9FRG 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              114.229 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OCTANE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9FRG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FRG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 K N N 
? 4 S N N 
? 4 U N N 
? 4 BA N N 
? 4 DA N N 
? 4 JA N N 
? 4 LA N N 
? 4 RA N N 
? 4 TA N N 
#
_chem_comp.formula           'C8 H18' 
_chem_comp.formula_weight    114.229 
_chem_comp.id                OCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OCT sing 333 n n 
C1 H11 OCT sing 334 n n 
C1 H12 OCT sing 335 n n 
C1 H13 OCT sing 336 n n 
C2 C3 OCT sing 337 n n 
C2 H21 OCT sing 338 n n 
C2 H22 OCT sing 339 n n 
C3 C4 OCT sing 340 n n 
C3 H31 OCT sing 341 n n 
C3 H32 OCT sing 342 n n 
C4 C5 OCT sing 343 n n 
C4 H41 OCT sing 344 n n 
C4 H42 OCT sing 345 n n 
C5 C6 OCT sing 346 n n 
C5 H51 OCT sing 347 n n 
C5 H52 OCT sing 348 n n 
C6 C7 OCT sing 349 n n 
C6 H61 OCT sing 350 n n 
C6 H62 OCT sing 351 n n 
C7 C8 OCT sing 352 n n 
C7 H71 OCT sing 353 n n 
C7 H72 OCT sing 354 n n 
C8 H81 OCT sing 355 n n 
C8 H82 OCT sing 356 n n 
C8 H83 OCT sing 357 n n 
#
_atom_sites.entry_id                     9FRG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 501 602 NAG NAG . 
G 2 NAG A 1 502 603 NAG NAG . 
H 3 D10 A 1 503 701 D10 D10 . 
I 4 OCT A 1 504 702 OCT OCT . 
J 5 HEX A 1 505 703 HEX HEX . 
K 4 OCT A 1 506 704 OCT OCT . 
L 5 HEX A 1 507 705 HEX HEX . 
M 6 A1IFH A 1 508 601 A1IFH SGA . 
N 7 CL A 1 509 1 CL CL . 
O 7 CL A 1 510 2 CL CL . 
P 2 NAG E 1 501 602 NAG NAG . 
Q 2 NAG E 1 502 603 NAG NAG . 
R 3 D10 E 1 503 701 D10 D10 . 
S 4 OCT E 1 504 702 OCT OCT . 
T 5 HEX E 1 505 703 HEX HEX . 
U 4 OCT E 1 506 704 OCT OCT . 
V 5 HEX E 1 507 705 HEX HEX . 
W 6 A1IFH E 1 508 601 A1IFH SGA . 
X 6 A1IFH B 1 601 601 A1IFH SGA . 
Y 2 NAG B 1 602 602 NAG NAG . 
Z 2 NAG B 1 603 603 NAG NAG . 
AA 3 D10 B 1 604 701 D10 D10 . 
BA 4 OCT B 1 605 702 OCT OCT . 
CA 5 HEX B 1 606 703 HEX HEX . 
DA 4 OCT B 1 607 704 OCT OCT . 
EA 5 HEX B 1 608 705 HEX HEX . 
FA 6 A1IFH C 1 601 601 A1IFH SGA . 
GA 2 NAG C 1 602 602 NAG NAG . 
HA 2 NAG C 1 603 603 NAG NAG . 
IA 3 D10 C 1 604 701 D10 D10 . 
JA 4 OCT C 1 605 702 OCT OCT . 
KA 5 HEX C 1 606 703 HEX HEX . 
LA 4 OCT C 1 607 704 OCT OCT . 
MA 5 HEX C 1 608 705 HEX HEX . 
NA 6 A1IFH D 1 601 601 A1IFH SGA . 
OA 2 NAG D 1 602 602 NAG NAG . 
PA 2 NAG D 1 603 603 NAG NAG . 
QA 3 D10 D 1 604 701 D10 D10 . 
RA 4 OCT D 1 605 702 OCT OCT . 
SA 5 HEX D 1 606 703 HEX HEX . 
TA 4 OCT D 1 607 704 OCT OCT . 
UA 5 HEX D 1 608 705 HEX HEX . 
VA 8 HOH A 1 601 902 HOH HOH . 
VA 8 HOH A 2 602 903 HOH HOH . 
VA 8 HOH A 3 603 901 HOH HOH . 
VA 8 HOH A 4 604 920 HOH HOH . 
VA 8 HOH A 5 605 904 HOH HOH . 
VA 8 HOH A 6 606 922 HOH HOH . 
VA 8 HOH A 7 607 917 HOH HOH . 
VA 8 HOH A 8 608 915 HOH HOH . 
VA 8 HOH A 9 609 905 HOH HOH . 
VA 8 HOH A 10 610 913 HOH HOH . 
VA 8 HOH A 11 611 914 HOH HOH . 
WA 8 HOH E 1 601 902 HOH HOH . 
WA 8 HOH E 2 602 903 HOH HOH . 
WA 8 HOH E 3 603 901 HOH HOH . 
WA 8 HOH E 4 604 920 HOH HOH . 
WA 8 HOH E 5 605 904 HOH HOH . 
WA 8 HOH E 6 606 922 HOH HOH . 
WA 8 HOH E 7 607 917 HOH HOH . 
WA 8 HOH E 8 608 915 HOH HOH . 
WA 8 HOH E 9 609 905 HOH HOH . 
WA 8 HOH E 10 610 913 HOH HOH . 
WA 8 HOH E 11 611 914 HOH HOH . 
XA 8 HOH B 1 701 902 HOH HOH . 
XA 8 HOH B 2 702 903 HOH HOH . 
XA 8 HOH B 3 703 901 HOH HOH . 
XA 8 HOH B 4 704 904 HOH HOH . 
XA 8 HOH B 5 705 920 HOH HOH . 
XA 8 HOH B 6 706 922 HOH HOH . 
XA 8 HOH B 7 707 917 HOH HOH . 
XA 8 HOH B 8 708 915 HOH HOH . 
XA 8 HOH B 9 709 905 HOH HOH . 
XA 8 HOH B 10 710 913 HOH HOH . 
XA 8 HOH B 11 711 914 HOH HOH . 
YA 8 HOH C 1 701 902 HOH HOH . 
YA 8 HOH C 2 702 903 HOH HOH . 
YA 8 HOH C 3 703 901 HOH HOH . 
YA 8 HOH C 4 704 920 HOH HOH . 
YA 8 HOH C 5 705 904 HOH HOH . 
YA 8 HOH C 6 706 922 HOH HOH . 
YA 8 HOH C 7 707 917 HOH HOH . 
YA 8 HOH C 8 708 915 HOH HOH . 
YA 8 HOH C 9 709 905 HOH HOH . 
YA 8 HOH C 10 710 913 HOH HOH . 
YA 8 HOH C 11 711 914 HOH HOH . 
ZA 8 HOH D 1 701 902 HOH HOH . 
ZA 8 HOH D 2 702 903 HOH HOH . 
ZA 8 HOH D 3 703 901 HOH HOH . 
ZA 8 HOH D 4 704 920 HOH HOH . 
ZA 8 HOH D 5 705 904 HOH HOH . 
ZA 8 HOH D 6 706 922 HOH HOH . 
ZA 8 HOH D 7 707 917 HOH HOH . 
ZA 8 HOH D 8 708 915 HOH HOH . 
ZA 8 HOH D 9 709 905 HOH HOH . 
ZA 8 HOH D 10 710 913 HOH HOH . 
ZA 8 HOH D 11 711 914 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OCT . . . DA 4 168.761 154.061 144.943 1 70.4 ? C1 OCT 607 B 1 
HETATM 2 C C2 OCT . . . DA 4 169.166 154.23 146.403 1 78.4 ? C2 OCT 607 B 1 
HETATM 3 C C3 OCT . . . DA 4 168.479 155.46 146.99 1 81.52 ? C3 OCT 607 B 1 
HETATM 4 C C4 OCT . . . DA 4 169.178 155.78 148.307 1 81.74 ? C4 OCT 607 B 1 
HETATM 5 C C5 OCT . . . DA 4 168.335 156.695 149.182 1 82.38 ? C5 OCT 607 B 1 
HETATM 6 C C6 OCT . . . DA 4 168.942 156.717 150.582 1 81.38 ? C6 OCT 607 B 1 
HETATM 7 C C7 OCT . . . DA 4 168.348 157.905 151.331 1 87.08 ? C7 OCT 607 B 1 
HETATM 8 C C8 OCT . . . DA 4 169.02 158.073 152.69 1 83.8 ? C8 OCT 607 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#