data_9FRO # _model_server_result.job_id q56-U613g2yxZM9KHKJmDg _model_server_result.datetime_utc '2024-12-27 08:13:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 9FRO # _exptl.entry_id 9FRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FRO _cell.length_a 55.57 _cell.length_b 92.689 _cell.length_c 112.376 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 I N N ? 2 M N N # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NDG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NDG sing 295 n n C1 O5 NDG sing 296 n n C1 O1 NDG sing 297 n n C1 H1 NDG sing 298 n n C2 C3 NDG sing 299 n n C2 N2 NDG sing 300 n n C2 H2 NDG sing 301 n n C3 C4 NDG sing 302 n n C3 O3 NDG sing 303 n n C3 H3 NDG sing 304 n n C4 C5 NDG sing 305 n n C4 O4 NDG sing 306 n n C4 H4 NDG sing 307 n n C5 C6 NDG sing 308 n n C5 O5 NDG sing 309 n n C5 H5 NDG sing 310 n n C6 O6 NDG sing 311 n n C6 H61 NDG sing 312 n n C6 H62 NDG sing 313 n n C7 C8 NDG sing 314 n n C7 O7 NDG doub 315 n n C7 N2 NDG sing 316 n n C8 H81 NDG sing 317 n n C8 H82 NDG sing 318 n n C8 H83 NDG sing 319 n n O3 HO3 NDG sing 320 n n O4 HO4 NDG sing 321 n n O6 HO6 NDG sing 322 n n N2 HN2 NDG sing 323 n n O1 HO1 NDG sing 324 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9FRO _atom_sites.fract_transf_matrix[1][1] 0.017995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDG A 1 101 101 NDG NDG . G 2 NDG B 1 101 101 NDG NDG . H 3 FWQ E 1 101 102 FWQ FWQ . I 2 NDG D 1 101 101 NDG NDG . J 3 FWQ D 1 102 201 FWQ FWQ . K 3 FWQ D 1 103 301 FWQ FWQ . L 3 FWQ D 1 104 302 FWQ FWQ . M 2 NDG C 1 101 101 NDG NDG . N 4 HOH A 1 201 114 HOH HOH . N 4 HOH A 2 202 77 HOH HOH . N 4 HOH A 3 203 10 HOH HOH . N 4 HOH A 4 204 26 HOH HOH . N 4 HOH A 5 205 85 HOH HOH . N 4 HOH A 6 206 112 HOH HOH . N 4 HOH A 7 207 75 HOH HOH . N 4 HOH A 8 208 11 HOH HOH . N 4 HOH A 9 209 104 HOH HOH . N 4 HOH A 10 210 56 HOH HOH . N 4 HOH A 11 211 86 HOH HOH . N 4 HOH A 12 212 64 HOH HOH . N 4 HOH A 13 213 61 HOH HOH . N 4 HOH A 14 214 127 HOH HOH . N 4 HOH A 15 215 74 HOH HOH . N 4 HOH A 16 216 59 HOH HOH . N 4 HOH A 17 217 22 HOH HOH . N 4 HOH A 18 218 53 HOH HOH . N 4 HOH A 19 219 38 HOH HOH . N 4 HOH A 20 220 23 HOH HOH . N 4 HOH A 21 221 87 HOH HOH . N 4 HOH A 22 222 8 HOH HOH . N 4 HOH A 23 223 130 HOH HOH . N 4 HOH A 24 224 9 HOH HOH . O 4 HOH B 1 201 115 HOH HOH . O 4 HOH B 2 202 16 HOH HOH . O 4 HOH B 3 203 100 HOH HOH . O 4 HOH B 4 204 108 HOH HOH . O 4 HOH B 5 205 42 HOH HOH . O 4 HOH B 6 206 95 HOH HOH . O 4 HOH B 7 207 110 HOH HOH . O 4 HOH B 8 208 69 HOH HOH . O 4 HOH B 9 209 125 HOH HOH . O 4 HOH B 10 210 97 HOH HOH . O 4 HOH B 11 211 83 HOH HOH . O 4 HOH B 12 212 105 HOH HOH . O 4 HOH B 13 213 120 HOH HOH . O 4 HOH B 14 214 62 HOH HOH . O 4 HOH B 15 215 51 HOH HOH . O 4 HOH B 16 216 25 HOH HOH . O 4 HOH B 17 217 15 HOH HOH . O 4 HOH B 18 218 132 HOH HOH . O 4 HOH B 19 219 2 HOH HOH . O 4 HOH B 20 220 122 HOH HOH . O 4 HOH B 21 221 5 HOH HOH . P 4 HOH E 1 201 80 HOH HOH . P 4 HOH E 2 202 84 HOH HOH . P 4 HOH E 3 203 20 HOH HOH . P 4 HOH E 4 204 92 HOH HOH . P 4 HOH E 5 205 133 HOH HOH . P 4 HOH E 6 206 57 HOH HOH . P 4 HOH E 7 207 102 HOH HOH . P 4 HOH E 8 208 39 HOH HOH . P 4 HOH E 9 209 98 HOH HOH . P 4 HOH E 10 210 96 HOH HOH . P 4 HOH E 11 211 58 HOH HOH . P 4 HOH E 12 212 79 HOH HOH . P 4 HOH E 13 213 45 HOH HOH . P 4 HOH E 14 214 60 HOH HOH . P 4 HOH E 15 215 47 HOH HOH . P 4 HOH E 16 216 37 HOH HOH . P 4 HOH E 17 217 123 HOH HOH . P 4 HOH E 18 218 29 HOH HOH . P 4 HOH E 19 219 106 HOH HOH . P 4 HOH E 20 220 1 HOH HOH . P 4 HOH E 21 221 18 HOH HOH . P 4 HOH E 22 222 19 HOH HOH . P 4 HOH E 23 223 24 HOH HOH . P 4 HOH E 24 224 34 HOH HOH . Q 4 HOH D 1 201 82 HOH HOH . Q 4 HOH D 2 202 78 HOH HOH . Q 4 HOH D 3 203 109 HOH HOH . Q 4 HOH D 4 204 93 HOH HOH . Q 4 HOH D 5 205 72 HOH HOH . Q 4 HOH D 6 206 99 HOH HOH . Q 4 HOH D 7 207 63 HOH HOH . Q 4 HOH D 8 208 124 HOH HOH . Q 4 HOH D 9 209 35 HOH HOH . Q 4 HOH D 10 210 103 HOH HOH . Q 4 HOH D 11 211 31 HOH HOH . Q 4 HOH D 12 212 27 HOH HOH . Q 4 HOH D 13 213 116 HOH HOH . Q 4 HOH D 14 214 66 HOH HOH . Q 4 HOH D 15 215 3 HOH HOH . Q 4 HOH D 16 216 49 HOH HOH . Q 4 HOH D 17 217 81 HOH HOH . Q 4 HOH D 18 218 40 HOH HOH . Q 4 HOH D 19 219 90 HOH HOH . Q 4 HOH D 20 220 30 HOH HOH . Q 4 HOH D 21 221 113 HOH HOH . Q 4 HOH D 22 222 55 HOH HOH . Q 4 HOH D 23 223 36 HOH HOH . Q 4 HOH D 24 224 33 HOH HOH . Q 4 HOH D 25 225 41 HOH HOH . Q 4 HOH D 26 226 54 HOH HOH . Q 4 HOH D 27 227 91 HOH HOH . Q 4 HOH D 28 228 70 HOH HOH . Q 4 HOH D 29 229 118 HOH HOH . Q 4 HOH D 30 230 21 HOH HOH . Q 4 HOH D 31 231 76 HOH HOH . Q 4 HOH D 32 232 88 HOH HOH . Q 4 HOH D 33 233 13 HOH HOH . Q 4 HOH D 34 234 89 HOH HOH . Q 4 HOH D 35 235 73 HOH HOH . Q 4 HOH D 36 236 119 HOH HOH . Q 4 HOH D 37 237 4 HOH HOH . Q 4 HOH D 38 238 7 HOH HOH . Q 4 HOH D 39 239 134 HOH HOH . R 4 HOH C 1 201 48 HOH HOH . R 4 HOH C 2 202 32 HOH HOH . R 4 HOH C 3 203 52 HOH HOH . R 4 HOH C 4 204 6 HOH HOH . R 4 HOH C 5 205 46 HOH HOH . R 4 HOH C 6 206 111 HOH HOH . R 4 HOH C 7 207 68 HOH HOH . R 4 HOH C 8 208 94 HOH HOH . R 4 HOH C 9 209 117 HOH HOH . R 4 HOH C 10 210 101 HOH HOH . R 4 HOH C 11 211 71 HOH HOH . R 4 HOH C 12 212 44 HOH HOH . R 4 HOH C 13 213 126 HOH HOH . R 4 HOH C 14 214 121 HOH HOH . R 4 HOH C 15 215 129 HOH HOH . R 4 HOH C 16 216 67 HOH HOH . R 4 HOH C 17 217 65 HOH HOH . R 4 HOH C 18 218 50 HOH HOH . R 4 HOH C 19 219 43 HOH HOH . R 4 HOH C 20 220 128 HOH HOH . R 4 HOH C 21 221 28 HOH HOH . R 4 HOH C 22 222 131 HOH HOH . R 4 HOH C 23 223 14 HOH HOH . R 4 HOH C 24 224 107 HOH HOH . R 4 HOH C 25 225 12 HOH HOH . R 4 HOH C 26 226 135 HOH HOH . R 4 HOH C 27 227 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDG . . . G 2 -25.715 -17.427 9.107 0.82 34.39 ? C1 NDG 101 B 1 HETATM 2 C C2 NDG . . . G 2 -24.212 -17.363 9.461 0.82 28.32 ? C2 NDG 101 B 1 HETATM 3 C C3 NDG . . . G 2 -23.458 -18.5 8.77 0.82 33.86 ? C3 NDG 101 B 1 HETATM 4 C C4 NDG . . . G 2 -24.102 -19.845 9.105 0.82 32.15 ? C4 NDG 101 B 1 HETATM 5 C C5 NDG . . . G 2 -25.623 -19.824 8.862 0.82 39.3 ? C5 NDG 101 B 1 HETATM 6 C C6 NDG . . . G 2 -26.33 -21.039 9.473 0.82 38.91 ? C6 NDG 101 B 1 HETATM 7 C C7 NDG . . . G 2 -23.508 -15.081 10.053 0.82 27.94 ? C7 NDG 101 B 1 HETATM 8 C C8 NDG . . . G 2 -22.798 -13.825 9.566 0.82 28.88 ? C8 NDG 101 B 1 HETATM 9 O O5 NDG . . . G 2 -26.237 -18.697 9.493 0.82 32.08 ? O5 NDG 101 B 1 HETATM 10 O O3 NDG . . . G 2 -22.12 -18.451 9.255 0.82 28.48 ? O3 NDG 101 B 1 HETATM 11 O O4 NDG . . . G 2 -23.451 -20.82 8.301 0.82 31.28 ? O4 NDG 101 B 1 HETATM 12 O O6 NDG . . . G 2 -27.656 -21.185 8.948 0.82 40.36 ? O6 NDG 101 B 1 HETATM 13 O O7 NDG . . . G 2 -23.991 -15.171 11.174 0.82 26.12 ? O7 NDG 101 B 1 HETATM 14 N N2 NDG . . . G 2 -23.568 -16.097 9.143 0.82 30.61 ? N2 NDG 101 B 1 HETATM 15 O O1 NDG . . . G 2 -25.836 -17.21 7.73 0.82 37.61 ? O1 NDG 101 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 418 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #