data_9FRU # _model_server_result.job_id PG1T2X8bC4GoKxUJmrMs-Q _model_server_result.datetime_utc '2025-06-27 15:33:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 9FRU # _exptl.entry_id 9FRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.53 _cell.angle_gamma 90 _cell.entry_id 9FRU _cell.length_a 35.866 _cell.length_b 73.311 _cell.length_c 54.978 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 143 A CYS 195 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A SG CYS 148 A CYS 200 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc3 A SG CYS 169 A CYS 221 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 A SG CYS 172 A CYS 224 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 285 n n PA O2A NAD sing 286 n n PA O5B NAD sing 287 n n PA O3 NAD sing 288 n n O2A HOA2 NAD sing 289 n n O5B C5B NAD sing 290 n n C5B C4B NAD sing 291 n n C5B H51A NAD sing 292 n n C5B H52A NAD sing 293 n n C4B O4B NAD sing 294 n n C4B C3B NAD sing 295 n n C4B H4B NAD sing 296 n n O4B C1B NAD sing 297 n n C3B O3B NAD sing 298 n n C3B C2B NAD sing 299 n n C3B H3B NAD sing 300 n n O3B HO3A NAD sing 301 n n C2B O2B NAD sing 302 n n C2B C1B NAD sing 303 n n C2B H2B NAD sing 304 n n O2B HO2A NAD sing 305 n n C1B N9A NAD sing 306 n n C1B H1B NAD sing 307 n n N9A C8A NAD sing 308 n y N9A C4A NAD sing 309 n y C8A N7A NAD doub 310 n y C8A H8A NAD sing 311 n n N7A C5A NAD sing 312 n y C5A C6A NAD sing 313 n y C5A C4A NAD doub 314 n y C6A N6A NAD sing 315 n n C6A N1A NAD doub 316 n y N6A H61A NAD sing 317 n n N6A H62A NAD sing 318 n n N1A C2A NAD sing 319 n y C2A N3A NAD doub 320 n y C2A H2A NAD sing 321 n n N3A C4A NAD sing 322 n y O3 PN NAD sing 323 n n PN O1N NAD doub 324 n n PN O2N NAD sing 325 n n PN O5D NAD sing 326 n n O5D C5D NAD sing 327 n n C5D C4D NAD sing 328 n n C5D H51N NAD sing 329 n n C5D H52N NAD sing 330 n n C4D O4D NAD sing 331 n n C4D C3D NAD sing 332 n n C4D H4D NAD sing 333 n n O4D C1D NAD sing 334 n n C3D O3D NAD sing 335 n n C3D C2D NAD sing 336 n n C3D H3D NAD sing 337 n n O3D HO3N NAD sing 338 n n C2D O2D NAD sing 339 n n C2D C1D NAD sing 340 n n C2D H2D NAD sing 341 n n O2D HO2N NAD sing 342 n n C1D N1N NAD sing 343 n n C1D H1D NAD sing 344 n n N1N C2N NAD sing 345 n y N1N C6N NAD doub 346 n y C2N C3N NAD doub 347 n y C2N H2N NAD sing 348 n n C3N C7N NAD sing 349 n n C3N C4N NAD sing 350 n y C7N O7N NAD doub 351 n n C7N N7N NAD sing 352 n n N7N H71N NAD sing 353 n n N7N H72N NAD sing 354 n n C4N C5N NAD doub 355 n y C4N H4N NAD sing 356 n n C5N C6N NAD sing 357 n y C5N H5N NAD sing 358 n n C6N H6N NAD sing 359 n n # _atom_sites.entry_id 9FRU _atom_sites.fract_transf_matrix[1][1] 0.027882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 EDO A 1 402 403 EDO EDO . D 4 DMS A 1 403 404 DMS DMS . E 3 EDO A 1 404 405 EDO EDO . F 5 NAD A 1 405 402 NAD NAD . G 6 A1IBW A 1 406 401 A1IBW H15 . H 7 HOH A 1 501 111 HOH HOH . H 7 HOH A 2 502 78 HOH HOH . H 7 HOH A 3 503 55 HOH HOH . H 7 HOH A 4 504 39 HOH HOH . H 7 HOH A 5 505 58 HOH HOH . H 7 HOH A 6 506 118 HOH HOH . H 7 HOH A 7 507 104 HOH HOH . H 7 HOH A 8 508 6 HOH HOH . H 7 HOH A 9 509 51 HOH HOH . H 7 HOH A 10 510 120 HOH HOH . H 7 HOH A 11 511 2 HOH HOH . H 7 HOH A 12 512 13 HOH HOH . H 7 HOH A 13 513 130 HOH HOH . H 7 HOH A 14 514 46 HOH HOH . H 7 HOH A 15 515 4 HOH HOH . H 7 HOH A 16 516 25 HOH HOH . H 7 HOH A 17 517 42 HOH HOH . H 7 HOH A 18 518 21 HOH HOH . H 7 HOH A 19 519 131 HOH HOH . H 7 HOH A 20 520 29 HOH HOH . H 7 HOH A 21 521 45 HOH HOH . H 7 HOH A 22 522 3 HOH HOH . H 7 HOH A 23 523 24 HOH HOH . H 7 HOH A 24 524 56 HOH HOH . H 7 HOH A 25 525 18 HOH HOH . H 7 HOH A 26 526 10 HOH HOH . H 7 HOH A 27 527 66 HOH HOH . H 7 HOH A 28 528 117 HOH HOH . H 7 HOH A 29 529 26 HOH HOH . H 7 HOH A 30 530 67 HOH HOH . H 7 HOH A 31 531 76 HOH HOH . H 7 HOH A 32 532 41 HOH HOH . H 7 HOH A 33 533 125 HOH HOH . H 7 HOH A 34 534 63 HOH HOH . H 7 HOH A 35 535 84 HOH HOH . H 7 HOH A 36 536 7 HOH HOH . H 7 HOH A 37 537 114 HOH HOH . H 7 HOH A 38 538 16 HOH HOH . H 7 HOH A 39 539 124 HOH HOH . H 7 HOH A 40 540 14 HOH HOH . H 7 HOH A 41 541 8 HOH HOH . H 7 HOH A 42 542 11 HOH HOH . H 7 HOH A 43 543 136 HOH HOH . H 7 HOH A 44 544 128 HOH HOH . H 7 HOH A 45 545 89 HOH HOH . H 7 HOH A 46 546 32 HOH HOH . H 7 HOH A 47 547 17 HOH HOH . H 7 HOH A 48 548 112 HOH HOH . H 7 HOH A 49 549 9 HOH HOH . H 7 HOH A 50 550 19 HOH HOH . H 7 HOH A 51 551 47 HOH HOH . H 7 HOH A 52 552 28 HOH HOH . H 7 HOH A 53 553 23 HOH HOH . H 7 HOH A 54 554 61 HOH HOH . H 7 HOH A 55 555 115 HOH HOH . H 7 HOH A 56 556 105 HOH HOH . H 7 HOH A 57 557 20 HOH HOH . H 7 HOH A 58 558 108 HOH HOH . H 7 HOH A 59 559 80 HOH HOH . H 7 HOH A 60 560 53 HOH HOH . H 7 HOH A 61 561 81 HOH HOH . H 7 HOH A 62 562 65 HOH HOH . H 7 HOH A 63 563 1 HOH HOH . H 7 HOH A 64 564 59 HOH HOH . H 7 HOH A 65 565 30 HOH HOH . H 7 HOH A 66 566 62 HOH HOH . H 7 HOH A 67 567 54 HOH HOH . H 7 HOH A 68 568 93 HOH HOH . H 7 HOH A 69 569 57 HOH HOH . H 7 HOH A 70 570 82 HOH HOH . H 7 HOH A 71 571 37 HOH HOH . H 7 HOH A 72 572 60 HOH HOH . H 7 HOH A 73 573 134 HOH HOH . H 7 HOH A 74 574 107 HOH HOH . H 7 HOH A 75 575 110 HOH HOH . H 7 HOH A 76 576 135 HOH HOH . H 7 HOH A 77 577 33 HOH HOH . H 7 HOH A 78 578 34 HOH HOH . H 7 HOH A 79 579 85 HOH HOH . H 7 HOH A 80 580 95 HOH HOH . H 7 HOH A 81 581 116 HOH HOH . H 7 HOH A 82 582 87 HOH HOH . H 7 HOH A 83 583 43 HOH HOH . H 7 HOH A 84 584 121 HOH HOH . H 7 HOH A 85 585 70 HOH HOH . H 7 HOH A 86 586 5 HOH HOH . H 7 HOH A 87 587 126 HOH HOH . H 7 HOH A 88 588 44 HOH HOH . H 7 HOH A 89 589 52 HOH HOH . H 7 HOH A 90 590 127 HOH HOH . H 7 HOH A 91 591 15 HOH HOH . H 7 HOH A 92 592 31 HOH HOH . H 7 HOH A 93 593 68 HOH HOH . H 7 HOH A 94 594 48 HOH HOH . H 7 HOH A 95 595 38 HOH HOH . H 7 HOH A 96 596 22 HOH HOH . H 7 HOH A 97 597 79 HOH HOH . H 7 HOH A 98 598 113 HOH HOH . H 7 HOH A 99 599 129 HOH HOH . H 7 HOH A 100 600 86 HOH HOH . H 7 HOH A 101 601 106 HOH HOH . H 7 HOH A 102 602 99 HOH HOH . H 7 HOH A 103 603 27 HOH HOH . H 7 HOH A 104 604 72 HOH HOH . H 7 HOH A 105 605 119 HOH HOH . H 7 HOH A 106 606 101 HOH HOH . H 7 HOH A 107 607 92 HOH HOH . H 7 HOH A 108 608 97 HOH HOH . H 7 HOH A 109 609 71 HOH HOH . H 7 HOH A 110 610 49 HOH HOH . H 7 HOH A 111 611 74 HOH HOH . H 7 HOH A 112 612 36 HOH HOH . H 7 HOH A 113 613 35 HOH HOH . H 7 HOH A 114 614 77 HOH HOH . H 7 HOH A 115 615 122 HOH HOH . H 7 HOH A 116 616 91 HOH HOH . H 7 HOH A 117 617 83 HOH HOH . H 7 HOH A 118 618 88 HOH HOH . H 7 HOH A 119 619 132 HOH HOH . H 7 HOH A 120 620 94 HOH HOH . H 7 HOH A 121 621 40 HOH HOH . H 7 HOH A 122 622 123 HOH HOH . H 7 HOH A 123 623 103 HOH HOH . H 7 HOH A 124 624 90 HOH HOH . H 7 HOH A 125 625 109 HOH HOH . H 7 HOH A 126 626 64 HOH HOH . H 7 HOH A 127 627 102 HOH HOH . H 7 HOH A 128 628 96 HOH HOH . H 7 HOH A 129 629 133 HOH HOH . H 7 HOH A 130 630 73 HOH HOH . H 7 HOH A 131 631 98 HOH HOH . H 7 HOH A 132 632 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 5 -1.848 10.591 18.549 1 45.94 ? PA NAD 405 A 1 HETATM 2 O O1A NAD . . . F 5 -3.151 11.233 18.272 1 47.74 ? O1A NAD 405 A 1 HETATM 3 O O2A NAD . . . F 5 -1.608 9.199 18.102 1 42.07 -1 O2A NAD 405 A 1 HETATM 4 O O5B NAD . . . F 5 -1.56 10.69 20.114 1 39.28 ? O5B NAD 405 A 1 HETATM 5 C C5B NAD . . . F 5 -1.713 11.94 20.817 1 34.64 ? C5B NAD 405 A 1 HETATM 6 C C4B NAD . . . F 5 -1.995 11.609 22.26 1 32.34 ? C4B NAD 405 A 1 HETATM 7 O O4B NAD . . . F 5 -2.002 12.82 23.051 1 31.09 ? O4B NAD 405 A 1 HETATM 8 C C3B NAD . . . F 5 -3.332 10.909 22.52 1 33.73 ? C3B NAD 405 A 1 HETATM 9 O O3B NAD . . . F 5 -3.159 9.823 23.426 1 35 ? O3B NAD 405 A 1 HETATM 10 C C2B NAD . . . F 5 -4.192 12.022 23.125 1 34.37 ? C2B NAD 405 A 1 HETATM 11 O O2B NAD . . . F 5 -5.177 11.499 24.011 1 35.97 ? O2B NAD 405 A 1 HETATM 12 C C1B NAD . . . F 5 -3.135 12.803 23.893 1 32.4 ? C1B NAD 405 A 1 HETATM 13 N N9A NAD . . . F 5 -3.49 14.179 24.218 1 34.53 ? N9A NAD 405 A 1 HETATM 14 C C8A NAD . . . F 5 -4.13 15.094 23.424 1 34.29 ? C8A NAD 405 A 1 HETATM 15 N N7A NAD . . . F 5 -4.254 16.281 23.967 1 34 ? N7A NAD 405 A 1 HETATM 16 C C5A NAD . . . F 5 -3.652 16.138 25.21 1 36.13 ? C5A NAD 405 A 1 HETATM 17 C C6A NAD . . . F 5 -3.431 17.04 26.268 1 35 ? C6A NAD 405 A 1 HETATM 18 N N6A NAD . . . F 5 -3.805 18.324 26.247 1 32.45 ? N6A NAD 405 A 1 HETATM 19 N N1A NAD . . . F 5 -2.782 16.579 27.36 1 33.84 ? N1A NAD 405 A 1 HETATM 20 C C2A NAD . . . F 5 -2.383 15.304 27.381 1 31.46 ? C2A NAD 405 A 1 HETATM 21 N N3A NAD . . . F 5 -2.535 14.364 26.444 1 30.48 ? N3A NAD 405 A 1 HETATM 22 C C4A NAD . . . F 5 -3.179 14.847 25.377 1 34.26 ? C4A NAD 405 A 1 HETATM 23 O O3 NAD . . . F 5 -0.675 11.511 17.974 1 39.01 ? O3 NAD 405 A 1 HETATM 24 P PN NAD . . . F 5 0.878 11.216 17.74 1 41.86 ? PN NAD 405 A 1 HETATM 25 O O1N NAD . . . F 5 1.616 12.493 17.835 1 37.82 ? O1N NAD 405 A 1 HETATM 26 O O2N NAD . . . F 5 1.298 10.072 18.584 1 39.18 -1 O2N NAD 405 A 1 HETATM 27 O O5D NAD . . . F 5 0.877 10.775 16.207 1 47.44 ? O5D NAD 405 A 1 HETATM 28 C C5D NAD . . . F 5 1.927 11.285 15.359 1 48.9 ? C5D NAD 405 A 1 HETATM 29 C C4D NAD . . . F 5 1.441 11.446 13.941 1 52.98 ? C4D NAD 405 A 1 HETATM 30 O O4D NAD . . . F 5 0.346 12.388 13.898 1 56.58 ? O4D NAD 405 A 1 HETATM 31 C C3D NAD . . . F 5 2.489 11.997 12.975 1 56.77 ? C3D NAD 405 A 1 HETATM 32 O O3D NAD . . . F 5 2.318 11.46 11.667 1 61.28 ? O3D NAD 405 A 1 HETATM 33 C C2D NAD . . . F 5 2.217 13.501 13.01 1 53.96 ? C2D NAD 405 A 1 HETATM 34 O O2D NAD . . . F 5 2.643 14.154 11.818 1 57.69 ? O2D NAD 405 A 1 HETATM 35 C C1D NAD . . . F 5 0.689 13.482 13.092 1 60.6 ? C1D NAD 405 A 1 HETATM 36 N N1N NAD . . . F 5 0.104 14.715 13.691 1 61.99 ? N1N NAD 405 A 1 HETATM 37 C C2N NAD . . . F 5 0.847 15.809 13.931 1 55.68 ? C2N NAD 405 A 1 HETATM 38 C C3N NAD . . . F 5 0.278 16.924 14.517 1 55.3 ? C3N NAD 405 A 1 HETATM 39 C C7N NAD . . . F 5 1.062 18.177 14.787 1 46.52 ? C7N NAD 405 A 1 HETATM 40 O O7N NAD . . . F 5 2.16 18.339 14.243 1 38.57 ? O7N NAD 405 A 1 HETATM 41 N N7N NAD . . . F 5 0.517 19.088 15.586 1 46.45 ? N7N NAD 405 A 1 HETATM 42 C C4N NAD . . . F 5 -1.07 16.882 14.845 1 63.61 ? C4N NAD 405 A 1 HETATM 43 C C5N NAD . . . F 5 -1.809 15.742 14.586 1 68.53 ? C5N NAD 405 A 1 HETATM 44 C C6N NAD . . . F 5 -1.204 14.662 14.004 1 65.45 ? C6N NAD 405 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #