data_9FUP # _model_server_result.job_id LQglxoam4mpMxxzFqPzHsg _model_server_result.datetime_utc '2025-01-24 17:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1217}' # _entry.id 9FUP # _exptl.entry_id 9FUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FUP _cell.length_a 40.17 _cell.length_b 179.4 _cell.length_c 142.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 Q N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc3 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 421 n n C1 O20 OLB sing 422 n n C2 C1 OLB sing 423 n n C3 C2 OLB sing 424 n n C4 C3 OLB sing 425 n n C5 C4 OLB sing 426 n n C5 C6 OLB sing 427 n n O20 C21 OLB sing 428 n n C21 C22 OLB sing 429 n n C22 C24 OLB sing 430 n n O23 C22 OLB sing 431 n n C24 O25 OLB sing 432 n n C6 C7 OLB sing 433 n n C7 C8 OLB sing 434 n n C8 C9 OLB sing 435 n n C9 C10 OLB doub 436 z n C10 C11 OLB sing 437 n n C2 H2 OLB sing 438 n n C2 H2A OLB sing 439 n n C3 H3 OLB sing 440 n n C3 H3A OLB sing 441 n n C4 H4 OLB sing 442 n n C4 H4A OLB sing 443 n n C5 H5 OLB sing 444 n n C5 H5A OLB sing 445 n n C21 H21 OLB sing 446 n n C21 H21A OLB sing 447 n n C22 H22 OLB sing 448 n n O23 HO23 OLB sing 449 n n C24 H24 OLB sing 450 n n C24 H24A OLB sing 451 n n O25 HO25 OLB sing 452 n n C6 H16 OLB sing 453 n n C6 H17 OLB sing 454 n n C7 H18 OLB sing 455 n n C7 H19 OLB sing 456 n n C8 H20 OLB sing 457 n n C8 H211 OLB sing 458 n n C9 H221 OLB sing 459 n n C10 H23 OLB sing 460 n n C11 H241 OLB sing 461 n n C11 H25 OLB sing 462 n n C11 C12 OLB sing 463 n n C12 H26 OLB sing 464 n n C12 C13 OLB sing 465 n n C12 H27 OLB sing 466 n n C13 C14 OLB sing 467 n n C13 H28 OLB sing 468 n n C13 H29 OLB sing 469 n n C14 H30 OLB sing 470 n n C14 H31 OLB sing 471 n n C14 C15 OLB sing 472 n n C15 C16 OLB sing 473 n n C15 H32 OLB sing 474 n n C15 H33 OLB sing 475 n n C16 H34 OLB sing 476 n n C16 H35 OLB sing 477 n n C16 C17 OLB sing 478 n n C17 C18 OLB sing 479 n n C17 H36 OLB sing 480 n n C17 H37 OLB sing 481 n n C18 H38 OLB sing 482 n n C18 H39 OLB sing 483 n n C18 H40 OLB sing 484 n n # _atom_sites.entry_id 9FUP _atom_sites.fract_transf_matrix[1][1] 0.024894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1201 1201 NA NA . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 OLA A 1 1205 1205 OLA OLA . G 4 OLA A 1 1206 1206 OLA OLA . H 4 OLA A 1 1207 1207 OLA OLA . I 4 OLA A 1 1208 1208 OLA OLA . J 4 OLA A 1 1209 1210 OLA OLA . K 4 OLA A 1 1210 1211 OLA OLA . L 4 OLA A 1 1211 1212 OLA OLA . M 4 OLA A 1 1212 1213 OLA OLA . N 4 OLA A 1 1213 1214 OLA OLA . O 4 OLA A 1 1214 1215 OLA OLA . P 4 OLA A 1 1215 1218 OLA OLA . Q 5 OLB A 1 1216 1220 OLB OLB . R 5 OLB A 1 1217 1221 OLB OLB . S 6 OLC A 1 1218 1222 OLC OLC . T 6 OLC A 1 1219 1223 OLC OLC . U 7 JQ9 A 1 1220 1224 JQ9 JQ9 . V 8 HOH A 1 1301 162 HOH HOH . V 8 HOH A 2 1302 1 HOH HOH . V 8 HOH A 3 1303 168 HOH HOH . V 8 HOH A 4 1304 163 HOH HOH . V 8 HOH A 5 1305 164 HOH HOH . V 8 HOH A 6 1306 43 HOH HOH . V 8 HOH A 7 1307 160 HOH HOH . V 8 HOH A 8 1308 23 HOH HOH . V 8 HOH A 9 1309 37 HOH HOH . V 8 HOH A 10 1310 49 HOH HOH . V 8 HOH A 11 1311 32 HOH HOH . V 8 HOH A 12 1312 166 HOH HOH . V 8 HOH A 13 1313 40 HOH HOH . V 8 HOH A 14 1314 7 HOH HOH . V 8 HOH A 15 1315 156 HOH HOH . V 8 HOH A 16 1316 36 HOH HOH . V 8 HOH A 17 1317 26 HOH HOH . V 8 HOH A 18 1318 3 HOH HOH . V 8 HOH A 19 1319 10 HOH HOH . V 8 HOH A 20 1320 46 HOH HOH . V 8 HOH A 21 1321 150 HOH HOH . V 8 HOH A 22 1322 11 HOH HOH . V 8 HOH A 23 1323 161 HOH HOH . V 8 HOH A 24 1324 15 HOH HOH . V 8 HOH A 25 1325 159 HOH HOH . V 8 HOH A 26 1326 109 HOH HOH . V 8 HOH A 27 1327 4 HOH HOH . V 8 HOH A 28 1328 2 HOH HOH . V 8 HOH A 29 1329 154 HOH HOH . V 8 HOH A 30 1330 48 HOH HOH . V 8 HOH A 31 1331 169 HOH HOH . V 8 HOH A 32 1332 155 HOH HOH . V 8 HOH A 33 1333 157 HOH HOH . V 8 HOH A 34 1334 165 HOH HOH . V 8 HOH A 35 1335 47 HOH HOH . V 8 HOH A 36 1336 158 HOH HOH . V 8 HOH A 37 1337 167 HOH HOH . V 8 HOH A 38 1338 89 HOH HOH . V 8 HOH A 39 1339 62 HOH HOH . V 8 HOH A 40 1340 152 HOH HOH . V 8 HOH A 41 1341 153 HOH HOH . V 8 HOH A 42 1342 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . R 5 35.611 19.791 18.04 0.78 90.14 ? C1 OLB 1217 A 1 HETATM 2 C C2 OLB . . . R 5 35.096 18.426 18.414 0.78 86.4 ? C2 OLB 1217 A 1 HETATM 3 C C3 OLB . . . R 5 36.194 17.394 18.619 0.78 84.06 ? C3 OLB 1217 A 1 HETATM 4 C C4 OLB . . . R 5 35.638 16.021 18.978 0.78 81 ? C4 OLB 1217 A 1 HETATM 5 C C5 OLB . . . R 5 35.133 15.26 17.758 0.78 81.92 ? C5 OLB 1217 A 1 HETATM 6 O O19 OLB . . . R 5 36.73 20.194 18.239 0.78 96.19 ? O19 OLB 1217 A 1 HETATM 7 O O20 OLB . . . R 5 34.679 20.524 17.441 0.78 84.56 ? O20 OLB 1217 A 1 HETATM 8 C C21 OLB . . . R 5 33.784 21.288 18.249 0.78 86 ? C21 OLB 1217 A 1 HETATM 9 C C22 OLB . . . R 5 34.572 22.418 18.888 0.78 88.77 ? C22 OLB 1217 A 1 HETATM 10 O O23 OLB . . . R 5 35.34 23.127 17.948 0.78 89.08 ? O23 OLB 1217 A 1 HETATM 11 C C24 OLB . . . R 5 33.615 23.312 19.661 0.78 85.6 ? C24 OLB 1217 A 1 HETATM 12 O O25 OLB . . . R 5 34.34 24.398 20.183 0.78 86.42 ? O25 OLB 1217 A 1 HETATM 13 C C6 OLB . . . R 5 35.859 13.943 17.511 0.78 78.42 ? C6 OLB 1217 A 1 HETATM 14 C C7 OLB . . . R 5 35.429 12.818 18.446 0.78 79.7 ? C7 OLB 1217 A 1 HETATM 15 C C8 OLB . . . R 5 35.456 11.444 17.775 0.78 73.88 ? C8 OLB 1217 A 1 HETATM 16 C C9 OLB . . . R 5 36.435 10.483 18.384 0.78 81.4 ? C9 OLB 1217 A 1 HETATM 17 C C10 OLB . . . R 5 36.743 10.317 19.671 0.78 77.31 ? C10 OLB 1217 A 1 HETATM 18 C C11 OLB . . . R 5 37.729 9.341 20.244 0.78 77.58 ? C11 OLB 1217 A 1 HETATM 19 H H2 OLB . . . R 5 34.559 18.515 19.217 0.78 103.72 ? H2 OLB 1217 A 1 HETATM 20 H H2A OLB . . . R 5 34.481 18.135 17.724 0.78 103.72 ? H2A OLB 1217 A 1 HETATM 21 H H3 OLB . . . R 5 36.794 17.69 19.321 0.78 100.92 ? H3 OLB 1217 A 1 HETATM 22 H H3A OLB . . . R 5 36.729 17.322 17.813 0.78 100.92 ? H3A OLB 1217 A 1 HETATM 23 H H4 OLB . . . R 5 36.322 15.498 19.424 0.78 97.24 ? H4 OLB 1217 A 1 HETATM 24 H H4A OLB . . . R 5 34.915 16.118 19.618 0.78 97.24 ? H4A OLB 1217 A 1 HETATM 25 H H5 OLB . . . R 5 34.185 15.087 17.86 0.78 98.35 ? H5 OLB 1217 A 1 HETATM 26 H H5A OLB . . . R 5 35.22 15.823 16.973 0.78 98.35 ? H5A OLB 1217 A 1 HETATM 27 H H21 OLB . . . R 5 33.065 21.642 17.703 0.78 103.24 ? H21 OLB 1217 A 1 HETATM 28 H H21A OLB . . . R 5 33.388 20.722 18.93 0.78 103.24 ? H21A OLB 1217 A 1 HETATM 29 H H22 OLB . . . R 5 35.209 22.038 19.514 0.78 106.57 ? H22 OLB 1217 A 1 HETATM 30 H HO23 OLB . . . R 5 35.852 23.665 18.362 0.78 106.94 ? HO23 OLB 1217 A 1 HETATM 31 H H24 OLB . . . R 5 33.193 22.793 20.363 0.78 102.76 ? H24 OLB 1217 A 1 HETATM 32 H H24A OLB . . . R 5 32.907 23.607 19.068 0.78 102.76 ? H24A OLB 1217 A 1 HETATM 33 H HO25 OLB . . . R 5 33.784 24.947 20.519 0.78 103.75 ? HO25 OLB 1217 A 1 HETATM 34 H H16 OLB . . . R 5 36.815 14.081 17.601 0.78 94.15 ? H16 OLB 1217 A 1 HETATM 35 H H17 OLB . . . R 5 35.714 13.664 16.594 0.78 94.15 ? H17 OLB 1217 A 1 HETATM 36 H H18 OLB . . . R 5 34.535 12.996 18.777 0.78 95.69 ? H18 OLB 1217 A 1 HETATM 37 H H19 OLB . . . R 5 36.008 12.806 19.225 0.78 95.69 ? H19 OLB 1217 A 1 HETATM 38 H H20 OLB . . . R 5 35.658 11.568 16.834 0.78 88.7 ? H20 OLB 1217 A 1 HETATM 39 H H211 OLB . . . R 5 34.562 11.07 17.81 0.78 88.7 ? H211 OLB 1217 A 1 HETATM 40 H H221 OLB . . . R 5 36.875 9.941 17.769 0.78 97.72 ? H221 OLB 1217 A 1 HETATM 41 C C12 OLB . . . R 5 37.574 9.167 21.758 0.78 81.53 ? C12 OLB 1217 A 1 HETATM 42 H H23 OLB . . . R 5 36.31 10.856 20.292 0.78 92.82 ? H23 OLB 1217 A 1 HETATM 43 H H241 OLB . . . R 5 38.637 9.628 20.059 0.78 93.13 ? H241 OLB 1217 A 1 HETATM 44 C C13 OLB . . . R 5 37.746 7.723 22.213 0.78 73.16 ? C13 OLB 1217 A 1 HETATM 45 H H25 OLB . . . R 5 37.629 8.472 19.823 0.78 93.13 ? H25 OLB 1217 A 1 HETATM 46 H H26 OLB . . . R 5 36.7 9.489 22.028 0.78 97.88 ? H26 OLB 1217 A 1 HETATM 47 H H27 OLB . . . R 5 38.221 9.729 22.212 0.78 97.88 ? H27 OLB 1217 A 1 HETATM 48 H H28 OLB . . . R 5 38.462 7.305 21.71 0.78 87.83 ? H28 OLB 1217 A 1 HETATM 49 H H29 OLB . . . R 5 36.941 7.225 22.002 0.78 87.83 ? H29 OLB 1217 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 49 #