data_9FUP # _model_server_result.job_id dG-Kk2i4HNQSTnfhd-q-KQ _model_server_result.datetime_utc '2025-01-24 17:46:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1219}' # _entry.id 9FUP # _exptl.entry_id 9FUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FUP _cell.length_a 40.17 _cell.length_b 179.4 _cell.length_c 142.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 S N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc3 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 485 n n C10 C9 OLC doub 486 n n C10 C11 OLC sing 487 n n C9 C8 OLC sing 488 n n C17 C16 OLC sing 489 z n C11 C12 OLC sing 490 n n C8 C7 OLC sing 491 n n C24 C22 OLC sing 492 n n C24 O25 OLC sing 493 n n C16 C15 OLC sing 494 n n C12 C13 OLC sing 495 n n C7 C6 OLC sing 496 n n C15 C14 OLC sing 497 n n C13 C14 OLC sing 498 n n C6 C5 OLC sing 499 n n C5 C4 OLC sing 500 n n C4 C3 OLC sing 501 n n C3 C2 OLC sing 502 n n C2 C1 OLC sing 503 n n C21 C22 OLC sing 504 n n C21 O20 OLC sing 505 n n C1 O19 OLC doub 506 n n C1 O20 OLC sing 507 n n C22 O23 OLC sing 508 n n C18 H18 OLC sing 509 n n C18 H18A OLC sing 510 n n C18 H18B OLC sing 511 n n C10 H10 OLC sing 512 n n C9 H9 OLC sing 513 n n C17 H17 OLC sing 514 n n C17 H17A OLC sing 515 n n C11 H11 OLC sing 516 n n C11 H11A OLC sing 517 n n C8 H8 OLC sing 518 n n C8 H8A OLC sing 519 n n C24 H24 OLC sing 520 n n C24 H24A OLC sing 521 n n C16 H16 OLC sing 522 n n C16 H16A OLC sing 523 n n C12 H12 OLC sing 524 n n C12 H12A OLC sing 525 n n C7 H7 OLC sing 526 n n C7 H7A OLC sing 527 n n C15 H15 OLC sing 528 n n C15 H15A OLC sing 529 n n C13 H13 OLC sing 530 n n C13 H13A OLC sing 531 n n C6 H6 OLC sing 532 n n C6 H6A OLC sing 533 n n C14 H14 OLC sing 534 n n C14 H14A OLC sing 535 n n C5 H5 OLC sing 536 n n C5 H5A OLC sing 537 n n C4 H4 OLC sing 538 n n C4 H4A OLC sing 539 n n C3 H3 OLC sing 540 n n C3 H3A OLC sing 541 n n C2 H2 OLC sing 542 n n C2 H2A OLC sing 543 n n C21 H21 OLC sing 544 n n C21 H21A OLC sing 545 n n C22 H22 OLC sing 546 n n O25 HO25 OLC sing 547 n n O23 HO23 OLC sing 548 n n # _atom_sites.entry_id 9FUP _atom_sites.fract_transf_matrix[1][1] 0.024894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1201 1201 NA NA . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 OLA A 1 1205 1205 OLA OLA . G 4 OLA A 1 1206 1206 OLA OLA . H 4 OLA A 1 1207 1207 OLA OLA . I 4 OLA A 1 1208 1208 OLA OLA . J 4 OLA A 1 1209 1210 OLA OLA . K 4 OLA A 1 1210 1211 OLA OLA . L 4 OLA A 1 1211 1212 OLA OLA . M 4 OLA A 1 1212 1213 OLA OLA . N 4 OLA A 1 1213 1214 OLA OLA . O 4 OLA A 1 1214 1215 OLA OLA . P 4 OLA A 1 1215 1218 OLA OLA . Q 5 OLB A 1 1216 1220 OLB OLB . R 5 OLB A 1 1217 1221 OLB OLB . S 6 OLC A 1 1218 1222 OLC OLC . T 6 OLC A 1 1219 1223 OLC OLC . U 7 JQ9 A 1 1220 1224 JQ9 JQ9 . V 8 HOH A 1 1301 162 HOH HOH . V 8 HOH A 2 1302 1 HOH HOH . V 8 HOH A 3 1303 168 HOH HOH . V 8 HOH A 4 1304 163 HOH HOH . V 8 HOH A 5 1305 164 HOH HOH . V 8 HOH A 6 1306 43 HOH HOH . V 8 HOH A 7 1307 160 HOH HOH . V 8 HOH A 8 1308 23 HOH HOH . V 8 HOH A 9 1309 37 HOH HOH . V 8 HOH A 10 1310 49 HOH HOH . V 8 HOH A 11 1311 32 HOH HOH . V 8 HOH A 12 1312 166 HOH HOH . V 8 HOH A 13 1313 40 HOH HOH . V 8 HOH A 14 1314 7 HOH HOH . V 8 HOH A 15 1315 156 HOH HOH . V 8 HOH A 16 1316 36 HOH HOH . V 8 HOH A 17 1317 26 HOH HOH . V 8 HOH A 18 1318 3 HOH HOH . V 8 HOH A 19 1319 10 HOH HOH . V 8 HOH A 20 1320 46 HOH HOH . V 8 HOH A 21 1321 150 HOH HOH . V 8 HOH A 22 1322 11 HOH HOH . V 8 HOH A 23 1323 161 HOH HOH . V 8 HOH A 24 1324 15 HOH HOH . V 8 HOH A 25 1325 159 HOH HOH . V 8 HOH A 26 1326 109 HOH HOH . V 8 HOH A 27 1327 4 HOH HOH . V 8 HOH A 28 1328 2 HOH HOH . V 8 HOH A 29 1329 154 HOH HOH . V 8 HOH A 30 1330 48 HOH HOH . V 8 HOH A 31 1331 169 HOH HOH . V 8 HOH A 32 1332 155 HOH HOH . V 8 HOH A 33 1333 157 HOH HOH . V 8 HOH A 34 1334 165 HOH HOH . V 8 HOH A 35 1335 47 HOH HOH . V 8 HOH A 36 1336 158 HOH HOH . V 8 HOH A 37 1337 167 HOH HOH . V 8 HOH A 38 1338 89 HOH HOH . V 8 HOH A 39 1339 62 HOH HOH . V 8 HOH A 40 1340 152 HOH HOH . V 8 HOH A 41 1341 153 HOH HOH . V 8 HOH A 42 1342 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . T 6 34.141 9.398 23.41 0.73 67.91 ? C10 OLC 1219 A 1 HETATM 2 C C9 OLC . . . T 6 34.117 10.702 23.147 0.73 64.16 ? C9 OLC 1219 A 1 HETATM 3 C C11 OLC . . . T 6 33.854 8.707 24.705 0.73 65.85 ? C11 OLC 1219 A 1 HETATM 4 C C8 OLC . . . T 6 33.807 11.827 24.08 0.73 65.66 ? C8 OLC 1219 A 1 HETATM 5 C C24 OLC . . . T 6 32.28 24.137 25.22 0.73 86.97 ? C24 OLC 1219 A 1 HETATM 6 C C12 OLC . . . T 6 34.184 7.216 24.63 0.73 67.07 ? C12 OLC 1219 A 1 HETATM 7 C C7 OLC . . . T 6 32.738 12.751 23.498 0.73 64.23 ? C7 OLC 1219 A 1 HETATM 8 C C6 OLC . . . T 6 33.306 13.949 22.749 0.73 63.23 ? C6 OLC 1219 A 1 HETATM 9 C C5 OLC . . . T 6 32.296 15.085 22.649 0.73 71.01 ? C5 OLC 1219 A 1 HETATM 10 C C4 OLC . . . T 6 32.84 16.333 21.967 0.73 73.51 ? C4 OLC 1219 A 1 HETATM 11 C C3 OLC . . . T 6 31.984 17.566 22.234 0.73 73.28 ? C3 OLC 1219 A 1 HETATM 12 C C2 OLC . . . T 6 32.823 18.827 22.38 0.73 81.55 ? C2 OLC 1219 A 1 HETATM 13 C C21 OLC . . . T 6 32.074 21.924 24.117 0.73 83.29 ? C21 OLC 1219 A 1 HETATM 14 C C1 OLC . . . T 6 32.012 20.056 22.687 0.73 80.94 ? C1 OLC 1219 A 1 HETATM 15 C C22 OLC . . . T 6 32.936 23.169 24.246 0.73 85.12 ? C22 OLC 1219 A 1 HETATM 16 O O19 OLC . . . T 6 30.836 20.189 22.455 0.73 84.18 ? O19 OLC 1219 A 1 HETATM 17 O O25 OLC . . . T 6 32.817 25.423 25.033 0.73 87.63 ? O25 OLC 1219 A 1 HETATM 18 O O23 OLC . . . T 6 34.263 22.856 24.589 0.73 93.62 ? O23 OLC 1219 A 1 HETATM 19 O O20 OLC . . . T 6 32.747 21.002 23.262 0.73 79.31 ? O20 OLC 1219 A 1 HETATM 20 H H10 OLC . . . T 6 34.364 8.829 22.709 0.73 81.53 ? H10 OLC 1219 A 1 HETATM 21 H H9 OLC . . . T 6 34.316 10.964 22.277 0.73 77.04 ? H9 OLC 1219 A 1 HETATM 22 H H11 OLC . . . T 6 34.366 9.114 25.422 0.73 79.06 ? H11 OLC 1219 A 1 HETATM 23 H H11A OLC . . . T 6 32.921 8.818 24.944 0.73 79.06 ? H11A OLC 1219 A 1 HETATM 24 H H8 OLC . . . T 6 33.502 11.479 24.932 0.73 78.83 ? H8 OLC 1219 A 1 HETATM 25 H H8A OLC . . . T 6 34.611 12.34 24.263 0.73 78.83 ? H8A OLC 1219 A 1 HETATM 26 H H24 OLC . . . T 6 32.428 23.815 26.123 0.73 104.4 ? H24 OLC 1219 A 1 HETATM 27 H H24A OLC . . . T 6 31.322 24.124 25.073 0.73 104.4 ? H24A OLC 1219 A 1 HETATM 28 H H12 OLC . . . T 6 33.559 6.779 24.029 0.73 80.52 ? H12 OLC 1219 A 1 HETATM 29 H H12A OLC . . . T 6 35.061 7.106 24.23 0.73 80.52 ? H12A OLC 1219 A 1 HETATM 30 H H7 OLC . . . T 6 32.168 12.24 22.902 0.73 77.12 ? H7 OLC 1219 A 1 HETATM 31 H H7A OLC . . . T 6 32.165 13.064 24.216 0.73 77.12 ? H7A OLC 1219 A 1 HETATM 32 H H6 OLC . . . T 6 34.108 14.264 23.195 0.73 75.92 ? H6 OLC 1219 A 1 HETATM 33 H H6A OLC . . . T 6 33.58 13.678 21.858 0.73 75.92 ? H6A OLC 1219 A 1 HETATM 34 H H5 OLC . . . T 6 31.512 14.776 22.167 0.73 85.25 ? H5 OLC 1219 A 1 HETATM 35 H H5A OLC . . . T 6 31.988 15.318 23.539 0.73 85.25 ? H5A OLC 1219 A 1 HETATM 36 H H4 OLC . . . T 6 32.897 16.181 21.011 0.73 88.26 ? H4 OLC 1219 A 1 HETATM 37 H H4A OLC . . . T 6 33.747 16.498 22.269 0.73 88.26 ? H4A OLC 1219 A 1 HETATM 38 H H3 OLC . . . T 6 31.348 17.679 21.511 0.73 87.97 ? H3 OLC 1219 A 1 HETATM 39 H H3A OLC . . . T 6 31.462 17.427 23.04 0.73 87.97 ? H3A OLC 1219 A 1 HETATM 40 H H2 OLC . . . T 6 33.484 18.722 23.082 0.73 97.91 ? H2 OLC 1219 A 1 HETATM 41 H H2A OLC . . . T 6 33.33 18.999 21.571 0.73 97.91 ? H2A OLC 1219 A 1 HETATM 42 H H21 OLC . . . T 6 31.208 22.147 23.743 0.73 99.99 ? H21 OLC 1219 A 1 HETATM 43 H H21A OLC . . . T 6 31.928 21.52 24.987 0.73 99.99 ? H21A OLC 1219 A 1 HETATM 44 H H22 OLC . . . T 6 32.984 23.607 23.381 0.73 102.18 ? H22 OLC 1219 A 1 HETATM 45 H HO25 OLC . . . T 6 32.437 25.949 25.582 0.73 105.2 ? HO25 OLC 1219 A 1 HETATM 46 H HO23 OLC . . . T 6 34.786 23.356 24.143 0.73 112.39 ? HO23 OLC 1219 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #