data_9FUP # _model_server_result.job_id PPKnJvZ9K026JOiEELnEJA _model_server_result.datetime_utc '2025-01-24 17:47:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":1220}' # _entry.id 9FUP # _exptl.entry_id 9FUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.429 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(~{E})-2-(3,4-dimethoxyphenyl)ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FUP _cell.length_a 40.17 _cell.length_b 179.4 _cell.length_c 142.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc3 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 B NA NA . A NA 1201 1_555 V O HOH . A HOH 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? # _chem_comp.formula 'C20 H24 N4 O4' _chem_comp.formula_weight 384.429 _chem_comp.id JQ9 _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(~{E})-2-(3,4-dimethoxyphenyl)ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms istradefylline # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 JQ9 sing 250 n n C12 C11 JQ9 sing 251 n n O2 C2 JQ9 doub 252 n n C21 N3 JQ9 sing 253 n n C2 N3 JQ9 sing 254 n n C2 N1 JQ9 sing 255 n n C11 N1 JQ9 sing 256 n n N3 C4 JQ9 sing 257 n n N1 C6 JQ9 sing 258 n n C4 N9 JQ9 sing 259 n y C4 C5 JQ9 doub 260 n y C6 C5 JQ9 sing 261 n n C6 O6 JQ9 doub 262 n n N9 C8 JQ9 doub 263 n y C5 N7 JQ9 sing 264 n y C8 N7 JQ9 sing 265 n y C8 CA JQ9 sing 266 n n N7 C7 JQ9 sing 267 n n CB CA JQ9 doub 268 e n CB C1' JQ9 sing 269 n n C2' C1' JQ9 doub 270 n y C2' C3' JQ9 sing 271 n y C9' O3' JQ9 sing 272 n n C1' C6' JQ9 sing 273 n y O3' C3' JQ9 sing 274 n n C3' C4' JQ9 doub 275 n y C6' C5' JQ9 doub 276 n y C4' C5' JQ9 sing 277 n y C4' O4' JQ9 sing 278 n n O4' C8' JQ9 sing 279 n n C12 H1 JQ9 sing 280 n n C12 H2 JQ9 sing 281 n n C12 H3 JQ9 sing 282 n n C21 H4 JQ9 sing 283 n n C21 H5 JQ9 sing 284 n n C22 H6 JQ9 sing 285 n n C22 H7 JQ9 sing 286 n n C22 H8 JQ9 sing 287 n n C7 H9 JQ9 sing 288 n n C7 H10 JQ9 sing 289 n n C7 H11 JQ9 sing 290 n n C11 H12 JQ9 sing 291 n n C11 H13 JQ9 sing 292 n n CA H14 JQ9 sing 293 n n CB H15 JQ9 sing 294 n n C6' H16 JQ9 sing 295 n n C5' H17 JQ9 sing 296 n n C8' H18 JQ9 sing 297 n n C8' H19 JQ9 sing 298 n n C8' H20 JQ9 sing 299 n n C2' H21 JQ9 sing 300 n n C9' H22 JQ9 sing 301 n n C9' H23 JQ9 sing 302 n n C9' H24 JQ9 sing 303 n n # _atom_sites.entry_id 9FUP _atom_sites.fract_transf_matrix[1][1] 0.024894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1201 1201 NA NA . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 OLA A 1 1205 1205 OLA OLA . G 4 OLA A 1 1206 1206 OLA OLA . H 4 OLA A 1 1207 1207 OLA OLA . I 4 OLA A 1 1208 1208 OLA OLA . J 4 OLA A 1 1209 1210 OLA OLA . K 4 OLA A 1 1210 1211 OLA OLA . L 4 OLA A 1 1211 1212 OLA OLA . M 4 OLA A 1 1212 1213 OLA OLA . N 4 OLA A 1 1213 1214 OLA OLA . O 4 OLA A 1 1214 1215 OLA OLA . P 4 OLA A 1 1215 1218 OLA OLA . Q 5 OLB A 1 1216 1220 OLB OLB . R 5 OLB A 1 1217 1221 OLB OLB . S 6 OLC A 1 1218 1222 OLC OLC . T 6 OLC A 1 1219 1223 OLC OLC . U 7 JQ9 A 1 1220 1224 JQ9 JQ9 . V 8 HOH A 1 1301 162 HOH HOH . V 8 HOH A 2 1302 1 HOH HOH . V 8 HOH A 3 1303 168 HOH HOH . V 8 HOH A 4 1304 163 HOH HOH . V 8 HOH A 5 1305 164 HOH HOH . V 8 HOH A 6 1306 43 HOH HOH . V 8 HOH A 7 1307 160 HOH HOH . V 8 HOH A 8 1308 23 HOH HOH . V 8 HOH A 9 1309 37 HOH HOH . V 8 HOH A 10 1310 49 HOH HOH . V 8 HOH A 11 1311 32 HOH HOH . V 8 HOH A 12 1312 166 HOH HOH . V 8 HOH A 13 1313 40 HOH HOH . V 8 HOH A 14 1314 7 HOH HOH . V 8 HOH A 15 1315 156 HOH HOH . V 8 HOH A 16 1316 36 HOH HOH . V 8 HOH A 17 1317 26 HOH HOH . V 8 HOH A 18 1318 3 HOH HOH . V 8 HOH A 19 1319 10 HOH HOH . V 8 HOH A 20 1320 46 HOH HOH . V 8 HOH A 21 1321 150 HOH HOH . V 8 HOH A 22 1322 11 HOH HOH . V 8 HOH A 23 1323 161 HOH HOH . V 8 HOH A 24 1324 15 HOH HOH . V 8 HOH A 25 1325 159 HOH HOH . V 8 HOH A 26 1326 109 HOH HOH . V 8 HOH A 27 1327 4 HOH HOH . V 8 HOH A 28 1328 2 HOH HOH . V 8 HOH A 29 1329 154 HOH HOH . V 8 HOH A 30 1330 48 HOH HOH . V 8 HOH A 31 1331 169 HOH HOH . V 8 HOH A 32 1332 155 HOH HOH . V 8 HOH A 33 1333 157 HOH HOH . V 8 HOH A 34 1334 165 HOH HOH . V 8 HOH A 35 1335 47 HOH HOH . V 8 HOH A 36 1336 158 HOH HOH . V 8 HOH A 37 1337 167 HOH HOH . V 8 HOH A 38 1338 89 HOH HOH . V 8 HOH A 39 1339 62 HOH HOH . V 8 HOH A 40 1340 152 HOH HOH . V 8 HOH A 41 1341 153 HOH HOH . V 8 HOH A 42 1342 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JQ9 . . . U 7 21.164 -4.361 18.679 1 47.83 ? N1 JQ9 1220 A 1 HETATM 2 C C12 JQ9 . . . U 7 21.039 -3.161 20.851 1 60.81 ? C12 JQ9 1220 A 1 HETATM 3 O O2 JQ9 . . . U 7 23.102 -3.522 17.817 1 52.15 ? O2 JQ9 1220 A 1 HETATM 4 C C2 JQ9 . . . U 7 22.33 -4.456 17.924 1 48.13 ? C2 JQ9 1220 A 1 HETATM 5 N N3 JQ9 . . . U 7 22.58 -5.654 17.3 1 53.81 ? N3 JQ9 1220 A 1 HETATM 6 C C21 JQ9 . . . U 7 23.789 -5.813 16.494 1 51.83 ? C21 JQ9 1220 A 1 HETATM 7 C C22 JQ9 . . . U 7 24.92 -6.454 17.282 1 54.33 ? C22 JQ9 1220 A 1 HETATM 8 C C4 JQ9 . . . U 7 21.696 -6.687 17.437 1 49.21 ? C4 JQ9 1220 A 1 HETATM 9 N N9 JQ9 . . . U 7 21.798 -7.904 16.896 1 45.64 ? N9 JQ9 1220 A 1 HETATM 10 C C8 JQ9 . . . U 7 20.705 -8.553 17.309 1 52.84 ? C8 JQ9 1220 A 1 HETATM 11 N N7 JQ9 . . . U 7 19.922 -7.781 18.093 1 50.72 ? N7 JQ9 1220 A 1 HETATM 12 C C7 JQ9 . . . U 7 18.665 -8.121 18.731 1 49.88 ? C7 JQ9 1220 A 1 HETATM 13 C C5 JQ9 . . . U 7 20.552 -6.563 18.186 1 46.31 ? C5 JQ9 1220 A 1 HETATM 14 C C6 JQ9 . . . U 7 20.209 -5.37 18.87 1 45.49 ? C6 JQ9 1220 A 1 HETATM 15 O O6 JQ9 . . . U 7 19.221 -5.19 19.561 1 47.05 ? O6 JQ9 1220 A 1 HETATM 16 C C11 JQ9 . . . U 7 20.888 -3.085 19.34 1 48.68 ? C11 JQ9 1220 A 1 HETATM 17 C CA JQ9 . . . U 7 20.385 -9.919 16.97 1 54.26 ? CA JQ9 1220 A 1 HETATM 18 C CB JQ9 . . . U 7 21.112 -10.647 16.11 1 57.87 ? CB JQ9 1220 A 1 HETATM 19 C C1' JQ9 . . . U 7 20.849 -12.027 15.728 1 62.97 ? C1' JQ9 1220 A 1 HETATM 20 C C6' JQ9 . . . U 7 19.673 -12.698 16.044 1 60.48 ? C6' JQ9 1220 A 1 HETATM 21 C C5' JQ9 . . . U 7 19.48 -14.015 15.658 1 62.29 ? C5' JQ9 1220 A 1 HETATM 22 C C4' JQ9 . . . U 7 20.46 -14.696 14.949 1 69.18 ? C4' JQ9 1220 A 1 HETATM 23 O O4' JQ9 . . . U 7 20.382 -15.966 14.529 1 70.23 ? O4' JQ9 1220 A 1 HETATM 24 C C8' JQ9 . . . U 7 19.152 -16.668 14.663 1 76.44 ? C8' JQ9 1220 A 1 HETATM 25 C C3' JQ9 . . . U 7 21.66 -14.033 14.623 1 70.97 ? C3' JQ9 1220 A 1 HETATM 26 C C2' JQ9 . . . U 7 21.84 -12.718 15.011 1 69.97 ? C2' JQ9 1220 A 1 HETATM 27 O O3' JQ9 . . . U 7 22.546 -14.774 13.936 1 67.75 ? O3' JQ9 1220 A 1 HETATM 28 C C9' JQ9 . . . U 7 23.644 -14.116 13.32 1 67.91 ? C9' JQ9 1220 A 1 HETATM 29 H H1 JQ9 . . . U 7 20.618 -3.958 21.211 1 73.02 ? H1 JQ9 1220 A 1 HETATM 30 H H2 JQ9 . . . U 7 21.972 -3.183 21.115 1 73.02 ? H2 JQ9 1220 A 1 HETATM 31 H H3 JQ9 . . . U 7 20.633 -2.397 21.289 1 73.02 ? H3 JQ9 1220 A 1 HETATM 32 H H4 JQ9 . . . U 7 23.565 -6.35 15.718 1 62.24 ? H4 JQ9 1220 A 1 HETATM 33 H H5 JQ9 . . . U 7 24.051 -4.937 16.169 1 62.24 ? H5 JQ9 1220 A 1 HETATM 34 H H6 JQ9 . . . U 7 25.747 -6.453 16.776 1 65.24 ? H6 JQ9 1220 A 1 HETATM 35 H H7 JQ9 . . . U 7 25.084 -5.98 18.112 1 65.24 ? H7 JQ9 1220 A 1 HETATM 36 H H8 JQ9 . . . U 7 24.715 -7.375 17.507 1 65.24 ? H8 JQ9 1220 A 1 HETATM 37 H H9 JQ9 . . . U 7 18.308 -7.352 19.202 1 59.9 ? H9 JQ9 1220 A 1 HETATM 38 H H10 JQ9 . . . U 7 18.017 -8.406 18.066 1 59.9 ? H10 JQ9 1220 A 1 HETATM 39 H H11 JQ9 . . . U 7 18.794 -8.842 19.367 1 59.9 ? H11 JQ9 1220 A 1 HETATM 40 H H12 JQ9 . . . U 7 21.493 -2.424 18.968 1 58.46 ? H12 JQ9 1220 A 1 HETATM 41 H H13 JQ9 . . . U 7 19.988 -2.816 19.098 1 58.46 ? H13 JQ9 1220 A 1 HETATM 42 H H14 JQ9 . . . U 7 19.636 -10.293 17.376 1 65.15 ? H14 JQ9 1220 A 1 HETATM 43 H H15 JQ9 . . . U 7 21.854 -10.25 15.713 1 69.49 ? H15 JQ9 1220 A 1 HETATM 44 H H16 JQ9 . . . U 7 18.995 -12.275 16.52 1 72.62 ? H16 JQ9 1220 A 1 HETATM 45 H H17 JQ9 . . . U 7 18.681 -14.435 15.883 1 74.79 ? H17 JQ9 1220 A 1 HETATM 46 H H18 JQ9 . . . U 7 18.856 -16.706 15.586 1 91.77 ? H18 JQ9 1220 A 1 HETATM 47 H H19 JQ9 . . . U 7 18.439 -16.251 14.154 1 91.77 ? H19 JQ9 1220 A 1 HETATM 48 H H20 JQ9 . . . U 7 19.222 -17.584 14.351 1 91.77 ? H20 JQ9 1220 A 1 HETATM 49 H H21 JQ9 . . . U 7 22.628 -12.271 14.801 1 84.01 ? H21 JQ9 1220 A 1 HETATM 50 H H22 JQ9 . . . U 7 24.281 -13.785 13.972 1 81.53 ? H22 JQ9 1220 A 1 HETATM 51 H H23 JQ9 . . . U 7 24.133 -14.704 12.724 1 81.53 ? H23 JQ9 1220 A 1 HETATM 52 H H24 JQ9 . . . U 7 23.361 -13.353 12.792 1 81.53 ? H24 JQ9 1220 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #