data_9FX7 # _model_server_result.job_id yzb6sQur6bW50-yL-IHLAQ _model_server_result.datetime_utc '2024-11-07 13:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 9FX7 # _exptl.entry_id 9FX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FX7 _cell.length_a 68.64 _cell.length_b 101.558 _cell.length_c 105.255 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 221 A ASN 221 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc2 A OD1 ASN 221 A ASN 221 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc3 A O PHE 223 A PHE 223 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc4 A O ASP 263 A ASP 263 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc5 A OD1 ASP 263 A ASP 263 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B O ASN 221 B ASN 221 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc7 B OD1 ASN 221 B ASN 221 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 B O PHE 223 B PHE 223 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc9 B O ASP 263 B ASP 263 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc10 B OD2 ASP 263 B ASP 263 1_555 K MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc11 K MG MG . B MG 504 1_555 M O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 9FX7 _atom_sites.fract_transf_matrix[1][1] 0.014569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 402 DMS DMS . E 3 SO4 A 1 403 403 SO4 SO4 . F 4 MG A 1 404 404 MG MG . G 2 DMS A 1 405 578 DMS DMS . H 2 DMS B 1 501 501 DMS DMS . I 2 DMS B 1 502 503 DMS DMS . J 3 SO4 B 1 503 504 SO4 SO4 . K 4 MG B 1 504 1 MG MG . L 5 HOH A 1 501 577 HOH HOH . L 5 HOH A 2 502 99 HOH HOH . L 5 HOH A 3 503 509 HOH HOH . L 5 HOH A 4 504 514 HOH HOH . L 5 HOH A 5 505 103 HOH HOH . L 5 HOH A 6 506 137 HOH HOH . L 5 HOH A 7 507 62 HOH HOH . L 5 HOH A 8 508 519 HOH HOH . L 5 HOH A 9 509 521 HOH HOH . L 5 HOH A 10 510 3 HOH HOH . L 5 HOH A 11 511 115 HOH HOH . L 5 HOH A 12 512 531 HOH HOH . L 5 HOH A 13 513 527 HOH HOH . L 5 HOH A 14 514 51 HOH HOH . L 5 HOH A 15 515 508 HOH HOH . L 5 HOH A 16 516 524 HOH HOH . L 5 HOH A 17 517 97 HOH HOH . L 5 HOH A 18 518 6 HOH HOH . L 5 HOH A 19 519 165 HOH HOH . L 5 HOH A 20 520 146 HOH HOH . L 5 HOH A 21 521 522 HOH HOH . L 5 HOH A 22 522 80 HOH HOH . L 5 HOH A 23 523 31 HOH HOH . L 5 HOH A 24 524 518 HOH HOH . L 5 HOH A 25 525 152 HOH HOH . L 5 HOH A 26 526 566 HOH HOH . L 5 HOH A 27 527 131 HOH HOH . L 5 HOH A 28 528 544 HOH HOH . L 5 HOH A 29 529 532 HOH HOH . L 5 HOH A 30 530 139 HOH HOH . L 5 HOH A 31 531 523 HOH HOH . L 5 HOH A 32 532 547 HOH HOH . L 5 HOH A 33 533 540 HOH HOH . L 5 HOH A 34 534 10 HOH HOH . L 5 HOH A 35 535 529 HOH HOH . L 5 HOH A 36 536 158 HOH HOH . L 5 HOH A 37 537 28 HOH HOH . L 5 HOH A 38 538 66 HOH HOH . L 5 HOH A 39 539 525 HOH HOH . L 5 HOH A 40 540 541 HOH HOH . L 5 HOH A 41 541 125 HOH HOH . L 5 HOH A 42 542 542 HOH HOH . L 5 HOH A 43 543 530 HOH HOH . L 5 HOH A 44 544 22 HOH HOH . L 5 HOH A 45 545 561 HOH HOH . L 5 HOH A 46 546 21 HOH HOH . L 5 HOH A 47 547 574 HOH HOH . L 5 HOH A 48 548 562 HOH HOH . L 5 HOH A 49 549 563 HOH HOH . L 5 HOH A 50 550 171 HOH HOH . L 5 HOH A 51 551 119 HOH HOH . L 5 HOH A 52 552 100 HOH HOH . L 5 HOH A 53 553 106 HOH HOH . L 5 HOH A 54 554 74 HOH HOH . L 5 HOH A 55 555 155 HOH HOH . L 5 HOH A 56 556 91 HOH HOH . L 5 HOH A 57 557 121 HOH HOH . L 5 HOH A 58 558 170 HOH HOH . L 5 HOH A 59 559 151 HOH HOH . L 5 HOH A 60 560 25 HOH HOH . L 5 HOH A 61 561 133 HOH HOH . L 5 HOH A 62 562 37 HOH HOH . L 5 HOH A 63 563 63 HOH HOH . L 5 HOH A 64 564 93 HOH HOH . L 5 HOH A 65 565 167 HOH HOH . L 5 HOH A 66 566 101 HOH HOH . L 5 HOH A 67 567 2 HOH HOH . L 5 HOH A 68 568 173 HOH HOH . L 5 HOH A 69 569 76 HOH HOH . L 5 HOH A 70 570 47 HOH HOH . L 5 HOH A 71 571 92 HOH HOH . L 5 HOH A 72 572 572 HOH HOH . L 5 HOH A 73 573 86 HOH HOH . L 5 HOH A 74 574 88 HOH HOH . L 5 HOH A 75 575 556 HOH HOH . L 5 HOH A 76 576 126 HOH HOH . L 5 HOH A 77 577 7 HOH HOH . L 5 HOH A 78 578 9 HOH HOH . L 5 HOH A 79 579 124 HOH HOH . L 5 HOH A 80 580 122 HOH HOH . L 5 HOH A 81 581 568 HOH HOH . L 5 HOH A 82 582 40 HOH HOH . L 5 HOH A 83 583 14 HOH HOH . L 5 HOH A 84 584 161 HOH HOH . L 5 HOH A 85 585 5 HOH HOH . L 5 HOH A 86 586 174 HOH HOH . L 5 HOH A 87 587 112 HOH HOH . L 5 HOH A 88 588 117 HOH HOH . L 5 HOH A 89 589 104 HOH HOH . L 5 HOH A 90 590 58 HOH HOH . L 5 HOH A 91 591 120 HOH HOH . L 5 HOH A 92 592 129 HOH HOH . L 5 HOH A 93 593 61 HOH HOH . L 5 HOH A 94 594 113 HOH HOH . L 5 HOH A 95 595 567 HOH HOH . L 5 HOH A 96 596 78 HOH HOH . L 5 HOH A 97 597 45 HOH HOH . L 5 HOH A 98 598 8 HOH HOH . L 5 HOH A 99 599 96 HOH HOH . L 5 HOH A 100 600 1 HOH HOH . L 5 HOH A 101 601 175 HOH HOH . L 5 HOH A 102 602 135 HOH HOH . L 5 HOH A 103 603 70 HOH HOH . L 5 HOH A 104 604 16 HOH HOH . L 5 HOH A 105 605 56 HOH HOH . L 5 HOH A 106 606 50 HOH HOH . L 5 HOH A 107 607 149 HOH HOH . L 5 HOH A 108 608 57 HOH HOH . L 5 HOH A 109 609 109 HOH HOH . L 5 HOH A 110 610 565 HOH HOH . L 5 HOH A 111 611 114 HOH HOH . L 5 HOH A 112 612 64 HOH HOH . L 5 HOH A 113 613 53 HOH HOH . L 5 HOH A 114 614 72 HOH HOH . L 5 HOH A 115 615 30 HOH HOH . L 5 HOH A 116 616 85 HOH HOH . L 5 HOH A 117 617 23 HOH HOH . L 5 HOH A 118 618 36 HOH HOH . L 5 HOH A 119 619 24 HOH HOH . L 5 HOH A 120 620 132 HOH HOH . L 5 HOH A 121 621 11 HOH HOH . L 5 HOH A 122 622 77 HOH HOH . L 5 HOH A 123 623 41 HOH HOH . L 5 HOH A 124 624 141 HOH HOH . L 5 HOH A 125 625 46 HOH HOH . L 5 HOH A 126 626 118 HOH HOH . L 5 HOH A 127 627 79 HOH HOH . L 5 HOH A 128 628 123 HOH HOH . L 5 HOH A 129 629 177 HOH HOH . L 5 HOH A 130 630 172 HOH HOH . M 5 HOH B 1 601 27 HOH HOH . M 5 HOH B 2 602 75 HOH HOH . M 5 HOH B 3 603 660 HOH HOH . M 5 HOH B 4 604 636 HOH HOH . M 5 HOH B 5 605 647 HOH HOH . M 5 HOH B 6 606 81 HOH HOH . M 5 HOH B 7 607 627 HOH HOH . M 5 HOH B 8 608 638 HOH HOH . M 5 HOH B 9 609 663 HOH HOH . M 5 HOH B 10 610 59 HOH HOH . M 5 HOH B 11 611 60 HOH HOH . M 5 HOH B 12 612 644 HOH HOH . M 5 HOH B 13 613 89 HOH HOH . M 5 HOH B 14 614 153 HOH HOH . M 5 HOH B 15 615 159 HOH HOH . M 5 HOH B 16 616 127 HOH HOH . M 5 HOH B 17 617 169 HOH HOH . M 5 HOH B 18 618 67 HOH HOH . M 5 HOH B 19 619 657 HOH HOH . M 5 HOH B 20 620 33 HOH HOH . M 5 HOH B 21 621 55 HOH HOH . M 5 HOH B 22 622 49 HOH HOH . M 5 HOH B 23 623 29 HOH HOH . M 5 HOH B 24 624 83 HOH HOH . M 5 HOH B 25 625 35 HOH HOH . M 5 HOH B 26 626 105 HOH HOH . M 5 HOH B 27 627 659 HOH HOH . M 5 HOH B 28 628 32 HOH HOH . M 5 HOH B 29 629 87 HOH HOH . M 5 HOH B 30 630 662 HOH HOH . M 5 HOH B 31 631 156 HOH HOH . M 5 HOH B 32 632 148 HOH HOH . M 5 HOH B 33 633 116 HOH HOH . M 5 HOH B 34 634 684 HOH HOH . M 5 HOH B 35 635 26 HOH HOH . M 5 HOH B 36 636 69 HOH HOH . M 5 HOH B 37 637 157 HOH HOH . M 5 HOH B 38 638 43 HOH HOH . M 5 HOH B 39 639 643 HOH HOH . M 5 HOH B 40 640 646 HOH HOH . M 5 HOH B 41 641 42 HOH HOH . M 5 HOH B 42 642 694 HOH HOH . M 5 HOH B 43 643 134 HOH HOH . M 5 HOH B 44 644 154 HOH HOH . M 5 HOH B 45 645 65 HOH HOH . M 5 HOH B 46 646 701 HOH HOH . M 5 HOH B 47 647 102 HOH HOH . M 5 HOH B 48 648 38 HOH HOH . M 5 HOH B 49 649 168 HOH HOH . M 5 HOH B 50 650 696 HOH HOH . M 5 HOH B 51 651 71 HOH HOH . M 5 HOH B 52 652 138 HOH HOH . M 5 HOH B 53 653 68 HOH HOH . M 5 HOH B 54 654 670 HOH HOH . M 5 HOH B 55 655 686 HOH HOH . M 5 HOH B 56 656 725 HOH HOH . M 5 HOH B 57 657 18 HOH HOH . M 5 HOH B 58 658 52 HOH HOH . M 5 HOH B 59 659 4 HOH HOH . M 5 HOH B 60 660 687 HOH HOH . M 5 HOH B 61 661 12 HOH HOH . M 5 HOH B 62 662 19 HOH HOH . M 5 HOH B 63 663 39 HOH HOH . M 5 HOH B 64 664 128 HOH HOH . M 5 HOH B 65 665 108 HOH HOH . M 5 HOH B 66 666 73 HOH HOH . M 5 HOH B 67 667 94 HOH HOH . M 5 HOH B 68 668 162 HOH HOH . M 5 HOH B 69 669 84 HOH HOH . M 5 HOH B 70 670 98 HOH HOH . M 5 HOH B 71 671 731 HOH HOH . M 5 HOH B 72 672 111 HOH HOH . M 5 HOH B 73 673 82 HOH HOH . M 5 HOH B 74 674 166 HOH HOH . M 5 HOH B 75 675 130 HOH HOH . M 5 HOH B 76 676 95 HOH HOH . M 5 HOH B 77 677 734 HOH HOH . M 5 HOH B 78 678 15 HOH HOH . M 5 HOH B 79 679 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 2 -6.489 -3.913 -12.082 1 59.31 ? S DMS 502 B 1 HETATM 2 O O DMS . . . I 2 -5.455 -3.595 -11.091 1 59.4 ? O DMS 502 B 1 HETATM 3 C C1 DMS . . . I 2 -7.997 -3.018 -11.614 1 58.81 ? C1 DMS 502 B 1 HETATM 4 C C2 DMS . . . I 2 -7.013 -5.603 -11.706 1 59.26 ? C2 DMS 502 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #