data_9FXE # _model_server_result.job_id DyuFVIC156CubSYQVL-RZQ _model_server_result.datetime_utc '2024-12-09 01:49:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 9FXE # _exptl.entry_id 9FXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 159.148 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,2,3-etheno-2-aminopurine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9FXE _cell.length_a 120.525 _cell.length_b 120.525 _cell.length_c 241.206 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 120.603 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C7 H5 N5' _chem_comp.formula_weight 159.148 _chem_comp.id A1IEC _chem_comp.mon_nstd_flag . _chem_comp.name N,2,3-etheno-2-aminopurine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1~{H}-imidazo[2,1-b]purine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 A1IEC sing 1 n y C02 N03 A1IEC doub 2 n y N03 C04 A1IEC sing 3 n y C04 C05 A1IEC doub 4 n y C05 N01 A1IEC sing 5 n y C04 C06 A1IEC sing 6 n y C06 N07 A1IEC doub 7 n y N07 C08 A1IEC sing 8 n y C08 N09 A1IEC sing 9 n y N09 C05 A1IEC sing 10 n y C08 N10 A1IEC doub 11 n y N10 C11 A1IEC sing 12 n y C11 C12 A1IEC doub 13 n y C12 N09 A1IEC sing 14 n y C02 H021 A1IEC sing 15 n n C06 H061 A1IEC sing 16 n n C11 H111 A1IEC sing 17 n n C12 H121 A1IEC sing 18 n n N01 H1 A1IEC sing 19 n n # _atom_sites.entry_id 9FXE _atom_sites.fract_transf_matrix[1][1] 0.008297 _atom_sites.fract_transf_matrix[1][2] 0.00479 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 300 300 PO4 PO4 . E 3 A1IEC A 1 301 301 A1IEC 2AP . F 2 PO4 C 1 300 300 PO4 PO4 . G 3 A1IEC C 1 301 301 A1IEC 2AP . H 2 PO4 B 1 300 300 PO4 PO4 . I 3 A1IEC B 1 301 301 A1IEC 2AP . J 4 HOH A 1 401 108 HOH HOH . J 4 HOH A 2 402 37 HOH HOH . J 4 HOH A 3 403 166 HOH HOH . J 4 HOH A 4 404 4 HOH HOH . J 4 HOH A 5 405 156 HOH HOH . J 4 HOH A 6 406 42 HOH HOH . J 4 HOH A 7 407 87 HOH HOH . J 4 HOH A 8 408 178 HOH HOH . J 4 HOH A 9 409 41 HOH HOH . J 4 HOH A 10 410 129 HOH HOH . J 4 HOH A 11 411 172 HOH HOH . J 4 HOH A 12 412 100 HOH HOH . J 4 HOH A 13 413 81 HOH HOH . J 4 HOH A 14 414 173 HOH HOH . J 4 HOH A 15 415 38 HOH HOH . J 4 HOH A 16 416 84 HOH HOH . J 4 HOH A 17 417 54 HOH HOH . J 4 HOH A 18 418 97 HOH HOH . J 4 HOH A 19 419 105 HOH HOH . J 4 HOH A 20 420 80 HOH HOH . J 4 HOH A 21 421 82 HOH HOH . J 4 HOH A 22 422 99 HOH HOH . J 4 HOH A 23 423 53 HOH HOH . J 4 HOH A 24 424 28 HOH HOH . J 4 HOH A 25 425 121 HOH HOH . J 4 HOH A 26 426 61 HOH HOH . J 4 HOH A 27 427 45 HOH HOH . J 4 HOH A 28 428 164 HOH HOH . J 4 HOH A 29 429 52 HOH HOH . J 4 HOH A 30 430 150 HOH HOH . J 4 HOH A 31 431 48 HOH HOH . J 4 HOH A 32 432 5 HOH HOH . J 4 HOH A 33 433 149 HOH HOH . J 4 HOH A 34 434 147 HOH HOH . J 4 HOH A 35 435 148 HOH HOH . J 4 HOH A 36 436 153 HOH HOH . J 4 HOH A 37 437 89 HOH HOH . J 4 HOH A 38 438 2 HOH HOH . J 4 HOH A 39 439 123 HOH HOH . J 4 HOH A 40 440 93 HOH HOH . J 4 HOH A 41 441 70 HOH HOH . J 4 HOH A 42 442 154 HOH HOH . J 4 HOH A 43 443 157 HOH HOH . J 4 HOH A 44 444 39 HOH HOH . J 4 HOH A 45 445 68 HOH HOH . J 4 HOH A 46 446 145 HOH HOH . J 4 HOH A 47 447 67 HOH HOH . J 4 HOH A 48 448 109 HOH HOH . J 4 HOH A 49 449 8 HOH HOH . J 4 HOH A 50 450 55 HOH HOH . J 4 HOH A 51 451 72 HOH HOH . J 4 HOH A 52 452 76 HOH HOH . J 4 HOH A 53 453 181 HOH HOH . J 4 HOH A 54 454 143 HOH HOH . J 4 HOH A 55 455 132 HOH HOH . J 4 HOH A 56 456 14 HOH HOH . J 4 HOH A 57 457 170 HOH HOH . K 4 HOH C 1 401 167 HOH HOH . K 4 HOH C 2 402 26 HOH HOH . K 4 HOH C 3 403 7 HOH HOH . K 4 HOH C 4 404 114 HOH HOH . K 4 HOH C 5 405 158 HOH HOH . K 4 HOH C 6 406 140 HOH HOH . K 4 HOH C 7 407 34 HOH HOH . K 4 HOH C 8 408 134 HOH HOH . K 4 HOH C 9 409 18 HOH HOH . K 4 HOH C 10 410 151 HOH HOH . K 4 HOH C 11 411 113 HOH HOH . K 4 HOH C 12 412 160 HOH HOH . K 4 HOH C 13 413 66 HOH HOH . K 4 HOH C 14 414 15 HOH HOH . K 4 HOH C 15 415 118 HOH HOH . K 4 HOH C 16 416 20 HOH HOH . K 4 HOH C 17 417 95 HOH HOH . K 4 HOH C 18 418 155 HOH HOH . K 4 HOH C 19 419 94 HOH HOH . K 4 HOH C 20 420 122 HOH HOH . K 4 HOH C 21 421 85 HOH HOH . K 4 HOH C 22 422 125 HOH HOH . K 4 HOH C 23 423 98 HOH HOH . K 4 HOH C 24 424 71 HOH HOH . K 4 HOH C 25 425 141 HOH HOH . K 4 HOH C 26 426 47 HOH HOH . K 4 HOH C 27 427 92 HOH HOH . K 4 HOH C 28 428 25 HOH HOH . K 4 HOH C 29 429 120 HOH HOH . K 4 HOH C 30 430 124 HOH HOH . K 4 HOH C 31 431 146 HOH HOH . K 4 HOH C 32 432 63 HOH HOH . K 4 HOH C 33 433 27 HOH HOH . K 4 HOH C 34 434 161 HOH HOH . K 4 HOH C 35 435 56 HOH HOH . K 4 HOH C 36 436 83 HOH HOH . K 4 HOH C 37 437 179 HOH HOH . K 4 HOH C 38 438 75 HOH HOH . K 4 HOH C 39 439 60 HOH HOH . K 4 HOH C 40 440 58 HOH HOH . K 4 HOH C 41 441 13 HOH HOH . K 4 HOH C 42 442 88 HOH HOH . K 4 HOH C 43 443 110 HOH HOH . K 4 HOH C 44 444 19 HOH HOH . K 4 HOH C 45 445 107 HOH HOH . K 4 HOH C 46 446 180 HOH HOH . K 4 HOH C 47 447 133 HOH HOH . K 4 HOH C 48 448 131 HOH HOH . K 4 HOH C 49 449 51 HOH HOH . K 4 HOH C 50 450 29 HOH HOH . K 4 HOH C 51 451 177 HOH HOH . K 4 HOH C 52 452 174 HOH HOH . K 4 HOH C 53 453 73 HOH HOH . K 4 HOH C 54 454 106 HOH HOH . K 4 HOH C 55 455 69 HOH HOH . L 4 HOH B 1 401 65 HOH HOH . L 4 HOH B 2 402 111 HOH HOH . L 4 HOH B 3 403 96 HOH HOH . L 4 HOH B 4 404 159 HOH HOH . L 4 HOH B 5 405 102 HOH HOH . L 4 HOH B 6 406 40 HOH HOH . L 4 HOH B 7 407 90 HOH HOH . L 4 HOH B 8 408 139 HOH HOH . L 4 HOH B 9 409 6 HOH HOH . L 4 HOH B 10 410 79 HOH HOH . L 4 HOH B 11 411 116 HOH HOH . L 4 HOH B 12 412 35 HOH HOH . L 4 HOH B 13 413 78 HOH HOH . L 4 HOH B 14 414 43 HOH HOH . L 4 HOH B 15 415 32 HOH HOH . L 4 HOH B 16 416 117 HOH HOH . L 4 HOH B 17 417 31 HOH HOH . L 4 HOH B 18 418 21 HOH HOH . L 4 HOH B 19 419 12 HOH HOH . L 4 HOH B 20 420 128 HOH HOH . L 4 HOH B 21 421 62 HOH HOH . L 4 HOH B 22 422 127 HOH HOH . L 4 HOH B 23 423 101 HOH HOH . L 4 HOH B 24 424 44 HOH HOH . L 4 HOH B 25 425 103 HOH HOH . L 4 HOH B 26 426 168 HOH HOH . L 4 HOH B 27 427 33 HOH HOH . L 4 HOH B 28 428 16 HOH HOH . L 4 HOH B 29 429 162 HOH HOH . L 4 HOH B 30 430 136 HOH HOH . L 4 HOH B 31 431 17 HOH HOH . L 4 HOH B 32 432 135 HOH HOH . L 4 HOH B 33 433 57 HOH HOH . L 4 HOH B 34 434 10 HOH HOH . L 4 HOH B 35 435 24 HOH HOH . L 4 HOH B 36 436 144 HOH HOH . L 4 HOH B 37 437 9 HOH HOH . L 4 HOH B 38 438 163 HOH HOH . L 4 HOH B 39 439 64 HOH HOH . L 4 HOH B 40 440 137 HOH HOH . L 4 HOH B 41 441 119 HOH HOH . L 4 HOH B 42 442 23 HOH HOH . L 4 HOH B 43 443 36 HOH HOH . L 4 HOH B 44 444 22 HOH HOH . L 4 HOH B 45 445 130 HOH HOH . L 4 HOH B 46 446 50 HOH HOH . L 4 HOH B 47 447 86 HOH HOH . L 4 HOH B 48 448 152 HOH HOH . L 4 HOH B 49 449 77 HOH HOH . L 4 HOH B 50 450 104 HOH HOH . L 4 HOH B 51 451 11 HOH HOH . L 4 HOH B 52 452 115 HOH HOH . L 4 HOH B 53 453 74 HOH HOH . L 4 HOH B 54 454 142 HOH HOH . L 4 HOH B 55 455 165 HOH HOH . L 4 HOH B 56 456 49 HOH HOH . L 4 HOH B 57 457 176 HOH HOH . L 4 HOH B 58 458 182 HOH HOH . L 4 HOH B 59 459 3 HOH HOH . L 4 HOH B 60 460 175 HOH HOH . L 4 HOH B 61 461 91 HOH HOH . L 4 HOH B 62 462 138 HOH HOH . L 4 HOH B 63 463 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 A1IEC . . . G 3 -6.653 82.127 87.566 1 52.79 ? C02 A1IEC 301 C 1 HETATM 2 C C04 A1IEC . . . G 3 -6.292 81.913 85.446 1 53.23 ? C04 A1IEC 301 C 1 HETATM 3 C C05 A1IEC . . . G 3 -5.061 81.977 86.106 1 54.88 ? C05 A1IEC 301 C 1 HETATM 4 C C06 A1IEC . . . G 3 -6.271 81.776 84.051 1 49.06 ? C06 A1IEC 301 C 1 HETATM 5 C C08 A1IEC . . . G 3 -3.974 81.772 84.073 1 55.91 ? C08 A1IEC 301 C 1 HETATM 6 C C11 A1IEC . . . G 3 -1.866 81.833 84.801 1 59.74 ? C11 A1IEC 301 C 1 HETATM 7 C C12 A1IEC . . . G 3 -2.77 81.926 85.69 1 61.93 ? C12 A1IEC 301 C 1 HETATM 8 N N01 A1IEC . . . G 3 -5.332 82.106 87.4 1 56.04 ? N01 A1IEC 301 C 1 HETATM 9 N N03 A1IEC . . . G 3 -7.236 82.01 86.378 1 57.99 ? N03 A1IEC 301 C 1 HETATM 10 N N07 A1IEC . . . G 3 -5.109 81.712 83.406 1 51.7 ? N07 A1IEC 301 C 1 HETATM 11 N N09 A1IEC . . . G 3 -3.949 81.905 85.417 1 57.39 ? N09 A1IEC 301 C 1 HETATM 12 N N10 A1IEC . . . G 3 -2.579 81.723 83.648 1 55.31 ? N10 A1IEC 301 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #