data_9FY4 # _model_server_result.job_id DnU-kx8klI49SbGSo_xq2Q _model_server_result.datetime_utc '2024-11-23 06:23:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 9FY4 # _exptl.entry_id 9FY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.575 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING CO' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.37 _cell.angle_gamma 90 _cell.entry_id 9FY4 _cell.length_a 41.681 _cell.length_b 63.525 _cell.length_c 76.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 20 A HIS 20 1_555 D CO COH . A COH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc2 C CO CO . A CO 301 1_555 G O HOH . A HOH 401 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc3 C CO CO . A CO 301 1_555 G O HOH . A HOH 438 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc4 D CO COH . A COH 302 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc5 B NE2 HIS 20 H HIS 20 1_555 E CO COH . H COH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc6 E CO COH . H COH 901 1_555 H O HOH . H HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? # _chem_comp.formula 'C34 H32 Co N4 O4' _chem_comp.formula_weight 619.575 _chem_comp.id COH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING CO' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO NA COH sing 70 n n CO NB COH sing 71 n n CO NC COH sing 72 n n CO ND COH sing 73 n n CHA C1A COH doub 74 n n CHA C4D COH sing 75 n n CHA HHA COH sing 76 n n CHB C4A COH sing 77 n n CHB C1B COH doub 78 n n CHB HHB COH sing 79 n n CHC C4B COH doub 80 n n CHC C1C COH sing 81 n n CHC HHC COH sing 82 n n CHD C4C COH doub 83 n n CHD C1D COH sing 84 n n CHD HHD COH sing 85 n n NA C1A COH sing 86 n n NA C4A COH doub 87 n n C1A C2A COH sing 88 n n C2A C3A COH doub 89 n n C2A CAA COH sing 90 n n C3A C4A COH sing 91 n n C3A CMA COH sing 92 n n CMA HMA1 COH sing 93 n n CMA HMA2 COH sing 94 n n CMA HMA3 COH sing 95 n n CAA CBA COH sing 96 n n CAA HAA1 COH sing 97 n n CAA HAA2 COH sing 98 n n CBA CGA COH sing 99 n n CBA HBA1 COH sing 100 n n CBA HBA2 COH sing 101 n n CGA O1A COH doub 102 n n CGA O2A COH sing 103 n n O2A H2A COH sing 104 n n NB C1B COH sing 105 n n NB C4B COH sing 106 n n C1B C2B COH sing 107 n n C2B C3B COH doub 108 n n C2B CMB COH sing 109 n n C3B C4B COH sing 110 n n C3B CAB COH sing 111 n n CMB HMB1 COH sing 112 n n CMB HMB2 COH sing 113 n n CMB HMB3 COH sing 114 n n CAB CBB COH doub 115 n n CAB HAB COH sing 116 n n CBB HBB1 COH sing 117 n n CBB HBB2 COH sing 118 n n NC C1C COH doub 119 n n NC C4C COH sing 120 n n C1C C2C COH sing 121 n n C2C C3C COH doub 122 n n C2C CMC COH sing 123 n n C3C C4C COH sing 124 n n C3C CAC COH sing 125 n n CMC HMC1 COH sing 126 n n CMC HMC2 COH sing 127 n n CMC HMC3 COH sing 128 n n CAC CBC COH doub 129 n n CAC HAC COH sing 130 n n CBC HBC1 COH sing 131 n n CBC HBC2 COH sing 132 n n ND C1D COH sing 133 n y ND C4D COH sing 134 n y C1D C2D COH doub 135 n y C2D C3D COH sing 136 n y C2D CMD COH sing 137 n n C3D C4D COH doub 138 n y C3D CAD COH sing 139 n n CMD HMD1 COH sing 140 n n CMD HMD2 COH sing 141 n n CMD HMD3 COH sing 142 n n CAD CBD COH sing 143 n n CAD HAD1 COH sing 144 n n CAD HAD2 COH sing 145 n n CBD CGD COH sing 146 n n CBD HBD1 COH sing 147 n n CBD HBD2 COH sing 148 n n CGD O1D COH doub 149 n n CGD O2D COH sing 150 n n O2D H2D COH sing 151 n n # _atom_sites.entry_id 9FY4 _atom_sites.fract_transf_matrix[1][1] 0.023992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003103 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 301 2 CO CO . D 3 COH A 1 302 902 COH COH . E 3 COH H 1 901 901 COH COH . F 4 CL H 1 902 1 CL CL . G 5 HOH A 1 401 142 HOH HOH . G 5 HOH A 2 402 104 HOH HOH . G 5 HOH A 3 403 78 HOH HOH . G 5 HOH A 4 404 72 HOH HOH . G 5 HOH A 5 405 108 HOH HOH . G 5 HOH A 6 406 66 HOH HOH . G 5 HOH A 7 407 106 HOH HOH . G 5 HOH A 8 408 133 HOH HOH . G 5 HOH A 9 409 59 HOH HOH . G 5 HOH A 10 410 98 HOH HOH . G 5 HOH A 11 411 28 HOH HOH . G 5 HOH A 12 412 95 HOH HOH . G 5 HOH A 13 413 125 HOH HOH . G 5 HOH A 14 414 5 HOH HOH . G 5 HOH A 15 415 113 HOH HOH . G 5 HOH A 16 416 24 HOH HOH . G 5 HOH A 17 417 65 HOH HOH . G 5 HOH A 18 418 105 HOH HOH . G 5 HOH A 19 419 63 HOH HOH . G 5 HOH A 20 420 135 HOH HOH . G 5 HOH A 21 421 118 HOH HOH . G 5 HOH A 22 422 99 HOH HOH . G 5 HOH A 23 423 45 HOH HOH . G 5 HOH A 24 424 10 HOH HOH . G 5 HOH A 25 425 100 HOH HOH . G 5 HOH A 26 426 18 HOH HOH . G 5 HOH A 27 427 2 HOH HOH . G 5 HOH A 28 428 25 HOH HOH . G 5 HOH A 29 429 68 HOH HOH . G 5 HOH A 30 430 114 HOH HOH . G 5 HOH A 31 431 58 HOH HOH . G 5 HOH A 32 432 42 HOH HOH . G 5 HOH A 33 433 76 HOH HOH . G 5 HOH A 34 434 75 HOH HOH . G 5 HOH A 35 435 101 HOH HOH . G 5 HOH A 36 436 39 HOH HOH . G 5 HOH A 37 437 55 HOH HOH . G 5 HOH A 38 438 143 HOH HOH . G 5 HOH A 39 439 128 HOH HOH . G 5 HOH A 40 440 19 HOH HOH . G 5 HOH A 41 441 57 HOH HOH . G 5 HOH A 42 442 119 HOH HOH . G 5 HOH A 43 443 137 HOH HOH . G 5 HOH A 44 444 27 HOH HOH . G 5 HOH A 45 445 122 HOH HOH . G 5 HOH A 46 446 30 HOH HOH . G 5 HOH A 47 447 129 HOH HOH . G 5 HOH A 48 448 67 HOH HOH . G 5 HOH A 49 449 140 HOH HOH . G 5 HOH A 50 450 62 HOH HOH . G 5 HOH A 51 451 35 HOH HOH . G 5 HOH A 52 452 71 HOH HOH . G 5 HOH A 53 453 70 HOH HOH . G 5 HOH A 54 454 96 HOH HOH . G 5 HOH A 55 455 53 HOH HOH . G 5 HOH A 56 456 46 HOH HOH . G 5 HOH A 57 457 117 HOH HOH . G 5 HOH A 58 458 80 HOH HOH . G 5 HOH A 59 459 89 HOH HOH . G 5 HOH A 60 460 54 HOH HOH . G 5 HOH A 61 461 6 HOH HOH . G 5 HOH A 62 462 49 HOH HOH . G 5 HOH A 63 463 139 HOH HOH . G 5 HOH A 64 464 134 HOH HOH . G 5 HOH A 65 465 13 HOH HOH . G 5 HOH A 66 466 107 HOH HOH . H 5 HOH H 1 1001 127 HOH HOH . H 5 HOH H 2 1002 56 HOH HOH . H 5 HOH H 3 1003 115 HOH HOH . H 5 HOH H 4 1004 26 HOH HOH . H 5 HOH H 5 1005 109 HOH HOH . H 5 HOH H 6 1006 1 HOH HOH . H 5 HOH H 7 1007 102 HOH HOH . H 5 HOH H 8 1008 38 HOH HOH . H 5 HOH H 9 1009 121 HOH HOH . H 5 HOH H 10 1010 86 HOH HOH . H 5 HOH H 11 1011 23 HOH HOH . H 5 HOH H 12 1012 41 HOH HOH . H 5 HOH H 13 1013 91 HOH HOH . H 5 HOH H 14 1014 12 HOH HOH . H 5 HOH H 15 1015 83 HOH HOH . H 5 HOH H 16 1016 29 HOH HOH . H 5 HOH H 17 1017 123 HOH HOH . H 5 HOH H 18 1018 9 HOH HOH . H 5 HOH H 19 1019 116 HOH HOH . H 5 HOH H 20 1020 15 HOH HOH . H 5 HOH H 21 1021 17 HOH HOH . H 5 HOH H 22 1022 82 HOH HOH . H 5 HOH H 23 1023 84 HOH HOH . H 5 HOH H 24 1024 141 HOH HOH . H 5 HOH H 25 1025 52 HOH HOH . H 5 HOH H 26 1026 21 HOH HOH . H 5 HOH H 27 1027 4 HOH HOH . H 5 HOH H 28 1028 32 HOH HOH . H 5 HOH H 29 1029 77 HOH HOH . H 5 HOH H 30 1030 79 HOH HOH . H 5 HOH H 31 1031 22 HOH HOH . H 5 HOH H 32 1032 132 HOH HOH . H 5 HOH H 33 1033 40 HOH HOH . H 5 HOH H 34 1034 16 HOH HOH . H 5 HOH H 35 1035 60 HOH HOH . H 5 HOH H 36 1036 88 HOH HOH . H 5 HOH H 37 1037 8 HOH HOH . H 5 HOH H 38 1038 136 HOH HOH . H 5 HOH H 39 1039 51 HOH HOH . H 5 HOH H 40 1040 36 HOH HOH . H 5 HOH H 41 1041 47 HOH HOH . H 5 HOH H 42 1042 33 HOH HOH . H 5 HOH H 43 1043 94 HOH HOH . H 5 HOH H 44 1044 64 HOH HOH . H 5 HOH H 45 1045 85 HOH HOH . H 5 HOH H 46 1046 48 HOH HOH . H 5 HOH H 47 1047 110 HOH HOH . H 5 HOH H 48 1048 43 HOH HOH . H 5 HOH H 49 1049 81 HOH HOH . H 5 HOH H 50 1050 90 HOH HOH . H 5 HOH H 51 1051 97 HOH HOH . H 5 HOH H 52 1052 14 HOH HOH . H 5 HOH H 53 1053 31 HOH HOH . H 5 HOH H 54 1054 20 HOH HOH . H 5 HOH H 55 1055 138 HOH HOH . H 5 HOH H 56 1056 124 HOH HOH . H 5 HOH H 57 1057 126 HOH HOH . H 5 HOH H 58 1058 11 HOH HOH . H 5 HOH H 59 1059 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO COH . . . D 3 -23.474 9.928 35.641 1 65.15 ? CO COH 302 A 1 HETATM 2 C CHA COH . . . D 3 -24.957 10.512 38.419 1 65.22 ? CHA COH 302 A 1 HETATM 3 C CHB COH . . . D 3 -21.543 7.574 36.81 1 65.2 ? CHB COH 302 A 1 HETATM 4 C CHC COH . . . D 3 -23.779 8.644 32.688 1 65.22 ? CHC COH 302 A 1 HETATM 5 C CHD COH . . . D 3 -23.515 13.055 34.616 1 65.19 ? CHD COH 302 A 1 HETATM 6 N NA COH . . . D 3 -23.281 9.157 37.364 1 65.2 ? NA COH 302 A 1 HETATM 7 C C1A COH . . . D 3 -23.939 9.472 38.481 1 65.19 ? C1A COH 302 A 1 HETATM 8 C C2A COH . . . D 3 -23.581 8.706 39.696 1 65.13 ? C2A COH 302 A 1 HETATM 9 C C3A COH . . . D 3 -22.534 7.803 39.199 1 65.14 ? C3A COH 302 A 1 HETATM 10 C C4A COH . . . D 3 -22.454 8.184 37.771 1 65.18 ? C4A COH 302 A 1 HETATM 11 C CMA COH . . . D 3 -21.747 6.757 39.937 1 65.13 ? CMA COH 302 A 1 HETATM 12 C CAA COH . . . D 3 -24.136 8.837 41.086 1 65.07 ? CAA COH 302 A 1 HETATM 13 C CBA COH . . . D 3 -23.097 9.572 41.921 1 65 ? CBA COH 302 A 1 HETATM 14 C CGA COH . . . D 3 -23.708 10.074 43.196 1 64.94 ? CGA COH 302 A 1 HETATM 15 O O1A COH . . . D 3 -23.181 9.768 44.28 1 64.92 ? O1A COH 302 A 1 HETATM 16 O O2A COH . . . D 3 -24.72 10.786 43.12 1 64.94 ? O2A COH 302 A 1 HETATM 17 N NB COH . . . D 3 -22.76 8.347 34.867 1 65.25 ? NB COH 302 A 1 HETATM 18 C C1B COH . . . D 3 -21.953 7.418 35.421 1 65.23 ? C1B COH 302 A 1 HETATM 19 C C2B COH . . . D 3 -21.531 6.28 34.564 1 65.22 ? C2B COH 302 A 1 HETATM 20 C C3B COH . . . D 3 -22.223 6.639 33.318 1 65.27 ? C3B COH 302 A 1 HETATM 21 C C4B COH . . . D 3 -22.929 7.9 33.617 1 65.26 ? C4B COH 302 A 1 HETATM 22 C CMB COH . . . D 3 -20.648 5.111 34.917 1 65.18 ? CMB COH 302 A 1 HETATM 23 C CAB COH . . . D 3 -22.25 5.942 32.012 1 65.3 ? CAB COH 302 A 1 HETATM 24 C CBB COH . . . D 3 -21.615 4.811 31.796 1 65.31 ? CBB COH 302 A 1 HETATM 25 N NC COH . . . D 3 -23.625 10.724 33.918 1 65.2 ? NC COH 302 A 1 HETATM 26 C C1C COH . . . D 3 -23.753 10.097 32.735 1 65.19 ? C1C COH 302 A 1 HETATM 27 C C2C COH . . . D 3 -23.854 10.949 31.531 1 65.17 ? C2C COH 302 A 1 HETATM 28 C C3C COH . . . D 3 -23.772 12.281 32.125 1 65.15 ? C3C COH 302 A 1 HETATM 29 C C4C COH . . . D 3 -23.631 12.032 33.578 1 65.18 ? C4C COH 302 A 1 HETATM 30 C CMC COH . . . D 3 -24.003 10.546 30.097 1 65.16 ? CMC COH 302 A 1 HETATM 31 C CAC COH . . . D 3 -23.817 13.556 31.375 1 65.14 ? CAC COH 302 A 1 HETATM 32 C CBC COH . . . D 3 -24.43 14.625 31.841 1 65.15 ? CBC COH 302 A 1 HETATM 33 N ND COH . . . D 3 -24.14 11.535 36.412 1 65.22 ? ND COH 302 A 1 HETATM 34 C C1D COH . . . D 3 -24.12 12.787 35.924 1 65.22 ? C1D COH 302 A 1 HETATM 35 C C2D COH . . . D 3 -24.73 13.825 36.785 1 65.24 ? C2D COH 302 A 1 HETATM 36 C C3D COH . . . D 3 -25.175 13.061 37.956 1 65.27 ? C3D COH 302 A 1 HETATM 37 C C4D COH . . . D 3 -24.755 11.689 37.591 1 65.24 ? C4D COH 302 A 1 HETATM 38 C CMD COH . . . D 3 -24.859 15.295 36.518 1 65.24 ? CMD COH 302 A 1 HETATM 39 C CAD COH . . . D 3 -25.892 13.565 39.185 1 65.38 ? CAD COH 302 A 1 HETATM 40 C CBD COH . . . D 3 -25.174 13.219 40.482 1 65.48 ? CBD COH 302 A 1 HETATM 41 C CGD COH . . . D 3 -26.186 13.229 41.601 1 65.55 ? CGD COH 302 A 1 HETATM 42 O O1D COH . . . D 3 -27.133 12.422 41.554 1 65.58 ? O1D COH 302 A 1 HETATM 43 O O2D COH . . . D 3 -26.046 14.043 42.534 1 65.57 ? O2D COH 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #