data_9FYB
#
_model_server_result.job_id            shhcYx09Rp604eGxhvPRYA 
_model_server_result.datetime_utc      '2025-02-28 03:00:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fyb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    9FYB 
#
_exptl.entry_id    9FYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.227 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          128.96 
_cell.angle_gamma         90 
_cell.entry_id            9FYB 
_cell.length_a            94.449 
_cell.length_b            107.344 
_cell.length_c            62.344 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H16 N2 O8 P 1' 
_chem_comp.formula_weight    335.227 
_chem_comp.id                NMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'NICOTINAMIDE MONONUCLEOTIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P NMN doub 237 n n 
P O1P NMN sing 238 n n 
P O2P NMN sing 239 n n 
P O5R NMN sing 240 n n 
O1P H1PO NMN sing 241 n n 
O2P H2PO NMN sing 242 n n 
O5R C5R NMN sing 243 n n 
C5R C4R NMN sing 244 n n 
C5R H5R1 NMN sing 245 n n 
C5R H5R2 NMN sing 246 n n 
C4R O4R NMN sing 247 n n 
C4R C3R NMN sing 248 n n 
C4R H4RC NMN sing 249 n n 
O4R C1R NMN sing 250 n n 
C3R O3R NMN sing 251 n n 
C3R C2R NMN sing 252 n n 
C3R H3RC NMN sing 253 n n 
O3R H3RO NMN sing 254 n n 
C2R O2R NMN sing 255 n n 
C2R C1R NMN sing 256 n n 
C2R H2RC NMN sing 257 n n 
O2R H2RO NMN sing 258 n n 
C1R N1 NMN sing 259 n n 
C1R H1RC NMN sing 260 n n 
N1 C2 NMN doub 261 n y 
N1 C6 NMN sing 262 n y 
C2 C3 NMN sing 263 n y 
C2 HC2 NMN sing 264 n n 
C3 C7 NMN sing 265 n n 
C3 C4 NMN doub 266 n y 
C7 O7 NMN doub 267 n n 
C7 N7 NMN sing 268 n n 
N7 HN71 NMN sing 269 n n 
N7 HN72 NMN sing 270 n n 
C4 C5 NMN sing 271 n y 
C4 HC4 NMN sing 272 n n 
C5 C6 NMN doub 273 n y 
C5 HC5 NMN sing 274 n n 
C6 HC6 NMN sing 275 n n 
#
_atom_sites.entry_id                     9FYB 
_atom_sites.fract_transf_matrix[1][1]    0.010588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008562 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009316 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020628 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NMN A 1 301 301 NMN NMN . 
D 3 PGE A 1 302 302 PGE PGE . 
E 4 PEG A 1 303 303 PEG PEG . 
F 4 PEG A 1 304 304 PEG PEG . 
G 5 PO4 A 1 305 305 PO4 PO4 . 
H 5 PO4 A 1 306 306 PO4 PO4 . 
I 5 PO4 A 1 307 307 PO4 PO4 . 
J 5 PO4 A 1 308 308 PO4 PO4 . 
K 5 PO4 A 1 309 309 PO4 PO4 . 
L 6 MG A 1 310 310 MG MG . 
M 5 PO4 B 1 301 301 PO4 PO4 . 
N 7 HOH A 1 401 401 HOH HOH . 
N 7 HOH A 2 402 402 HOH HOH . 
N 7 HOH A 3 403 403 HOH HOH . 
N 7 HOH A 4 404 404 HOH HOH . 
N 7 HOH A 5 405 405 HOH HOH . 
N 7 HOH A 6 406 406 HOH HOH . 
N 7 HOH A 7 407 407 HOH HOH . 
N 7 HOH A 8 408 408 HOH HOH . 
N 7 HOH A 9 409 409 HOH HOH . 
N 7 HOH A 10 410 410 HOH HOH . 
N 7 HOH A 11 411 411 HOH HOH . 
N 7 HOH A 12 412 412 HOH HOH . 
N 7 HOH A 13 413 413 HOH HOH . 
N 7 HOH A 14 414 414 HOH HOH . 
N 7 HOH A 15 415 415 HOH HOH . 
N 7 HOH A 16 416 416 HOH HOH . 
N 7 HOH A 17 417 417 HOH HOH . 
N 7 HOH A 18 418 418 HOH HOH . 
N 7 HOH A 19 419 419 HOH HOH . 
N 7 HOH A 20 420 420 HOH HOH . 
N 7 HOH A 21 421 421 HOH HOH . 
N 7 HOH A 22 422 422 HOH HOH . 
N 7 HOH A 23 423 423 HOH HOH . 
N 7 HOH A 24 424 424 HOH HOH . 
N 7 HOH A 25 425 425 HOH HOH . 
N 7 HOH A 26 426 426 HOH HOH . 
N 7 HOH A 27 427 427 HOH HOH . 
N 7 HOH A 28 428 428 HOH HOH . 
N 7 HOH A 29 429 429 HOH HOH . 
N 7 HOH A 30 430 430 HOH HOH . 
N 7 HOH A 31 431 431 HOH HOH . 
N 7 HOH A 32 432 432 HOH HOH . 
N 7 HOH A 33 433 433 HOH HOH . 
N 7 HOH A 34 434 434 HOH HOH . 
N 7 HOH A 35 435 435 HOH HOH . 
N 7 HOH A 36 436 436 HOH HOH . 
N 7 HOH A 37 437 437 HOH HOH . 
N 7 HOH A 38 438 438 HOH HOH . 
N 7 HOH A 39 439 439 HOH HOH . 
N 7 HOH A 40 440 440 HOH HOH . 
N 7 HOH A 41 441 441 HOH HOH . 
N 7 HOH A 42 442 442 HOH HOH . 
N 7 HOH A 43 443 443 HOH HOH . 
N 7 HOH A 44 444 444 HOH HOH . 
N 7 HOH A 45 445 445 HOH HOH . 
N 7 HOH A 46 446 446 HOH HOH . 
N 7 HOH A 47 447 447 HOH HOH . 
N 7 HOH A 48 448 448 HOH HOH . 
N 7 HOH A 49 449 449 HOH HOH . 
N 7 HOH A 50 450 450 HOH HOH . 
N 7 HOH A 51 451 451 HOH HOH . 
N 7 HOH A 52 452 452 HOH HOH . 
N 7 HOH A 53 453 453 HOH HOH . 
N 7 HOH A 54 454 454 HOH HOH . 
N 7 HOH A 55 455 455 HOH HOH . 
N 7 HOH A 56 456 456 HOH HOH . 
N 7 HOH A 57 457 457 HOH HOH . 
N 7 HOH A 58 458 458 HOH HOH . 
N 7 HOH A 59 459 459 HOH HOH . 
N 7 HOH A 60 460 460 HOH HOH . 
N 7 HOH A 61 461 461 HOH HOH . 
N 7 HOH A 62 462 462 HOH HOH . 
N 7 HOH A 63 463 463 HOH HOH . 
N 7 HOH A 64 464 464 HOH HOH . 
N 7 HOH A 65 465 465 HOH HOH . 
N 7 HOH A 66 466 466 HOH HOH . 
N 7 HOH A 67 467 467 HOH HOH . 
N 7 HOH A 68 468 468 HOH HOH . 
N 7 HOH A 69 469 469 HOH HOH . 
N 7 HOH A 70 470 470 HOH HOH . 
N 7 HOH A 71 471 471 HOH HOH . 
N 7 HOH A 72 472 472 HOH HOH . 
N 7 HOH A 73 473 473 HOH HOH . 
N 7 HOH A 74 474 474 HOH HOH . 
N 7 HOH A 75 475 475 HOH HOH . 
N 7 HOH A 76 476 476 HOH HOH . 
N 7 HOH A 77 477 477 HOH HOH . 
N 7 HOH A 78 478 478 HOH HOH . 
N 7 HOH A 79 479 479 HOH HOH . 
N 7 HOH A 80 480 480 HOH HOH . 
N 7 HOH A 81 481 481 HOH HOH . 
N 7 HOH A 82 482 482 HOH HOH . 
N 7 HOH A 83 483 483 HOH HOH . 
N 7 HOH A 84 484 484 HOH HOH . 
N 7 HOH A 85 485 485 HOH HOH . 
N 7 HOH A 86 486 486 HOH HOH . 
N 7 HOH A 87 487 487 HOH HOH . 
N 7 HOH A 88 488 488 HOH HOH . 
N 7 HOH A 89 489 489 HOH HOH . 
N 7 HOH A 90 490 490 HOH HOH . 
N 7 HOH A 91 491 491 HOH HOH . 
N 7 HOH A 92 492 492 HOH HOH . 
N 7 HOH A 93 493 493 HOH HOH . 
N 7 HOH A 94 494 494 HOH HOH . 
N 7 HOH A 95 495 495 HOH HOH . 
N 7 HOH A 96 496 496 HOH HOH . 
N 7 HOH A 97 497 497 HOH HOH . 
N 7 HOH A 98 498 498 HOH HOH . 
N 7 HOH A 99 499 499 HOH HOH . 
N 7 HOH A 100 500 500 HOH HOH . 
N 7 HOH A 101 501 501 HOH HOH . 
N 7 HOH A 102 502 502 HOH HOH . 
N 7 HOH A 103 503 503 HOH HOH . 
N 7 HOH A 104 504 504 HOH HOH . 
N 7 HOH A 105 505 505 HOH HOH . 
N 7 HOH A 106 506 506 HOH HOH . 
N 7 HOH A 107 507 507 HOH HOH . 
N 7 HOH A 108 508 508 HOH HOH . 
N 7 HOH A 109 509 509 HOH HOH . 
O 7 HOH B 1 401 401 HOH HOH . 
O 7 HOH B 2 402 402 HOH HOH . 
O 7 HOH B 3 403 403 HOH HOH . 
O 7 HOH B 4 404 404 HOH HOH . 
O 7 HOH B 5 405 405 HOH HOH . 
O 7 HOH B 6 406 406 HOH HOH . 
O 7 HOH B 7 407 407 HOH HOH . 
O 7 HOH B 8 408 408 HOH HOH . 
O 7 HOH B 9 409 409 HOH HOH . 
O 7 HOH B 10 410 410 HOH HOH . 
O 7 HOH B 11 411 411 HOH HOH . 
O 7 HOH B 12 412 412 HOH HOH . 
O 7 HOH B 13 413 413 HOH HOH . 
O 7 HOH B 14 414 414 HOH HOH . 
O 7 HOH B 15 415 415 HOH HOH . 
O 7 HOH B 16 416 416 HOH HOH . 
O 7 HOH B 17 417 417 HOH HOH . 
O 7 HOH B 18 418 418 HOH HOH . 
O 7 HOH B 19 419 419 HOH HOH . 
O 7 HOH B 20 420 420 HOH HOH . 
O 7 HOH B 21 421 421 HOH HOH . 
O 7 HOH B 22 422 422 HOH HOH . 
O 7 HOH B 23 423 423 HOH HOH . 
O 7 HOH B 24 424 424 HOH HOH . 
O 7 HOH B 25 425 425 HOH HOH . 
O 7 HOH B 26 426 426 HOH HOH . 
O 7 HOH B 27 427 427 HOH HOH . 
O 7 HOH B 28 428 428 HOH HOH . 
O 7 HOH B 29 429 429 HOH HOH . 
O 7 HOH B 30 430 430 HOH HOH . 
O 7 HOH B 31 431 431 HOH HOH . 
O 7 HOH B 32 432 432 HOH HOH . 
O 7 HOH B 33 433 433 HOH HOH . 
O 7 HOH B 34 434 434 HOH HOH . 
O 7 HOH B 35 435 435 HOH HOH . 
O 7 HOH B 36 436 436 HOH HOH . 
O 7 HOH B 37 437 437 HOH HOH . 
O 7 HOH B 38 438 438 HOH HOH . 
O 7 HOH B 39 439 439 HOH HOH . 
O 7 HOH B 40 440 440 HOH HOH . 
O 7 HOH B 41 441 441 HOH HOH . 
O 7 HOH B 42 442 442 HOH HOH . 
O 7 HOH B 43 443 443 HOH HOH . 
O 7 HOH B 44 444 444 HOH HOH . 
O 7 HOH B 45 445 445 HOH HOH . 
O 7 HOH B 46 446 446 HOH HOH . 
O 7 HOH B 47 447 447 HOH HOH . 
O 7 HOH B 48 448 448 HOH HOH . 
O 7 HOH B 49 449 449 HOH HOH . 
O 7 HOH B 50 450 450 HOH HOH . 
O 7 HOH B 51 451 451 HOH HOH . 
O 7 HOH B 52 452 452 HOH HOH . 
O 7 HOH B 53 453 453 HOH HOH . 
O 7 HOH B 54 454 454 HOH HOH . 
O 7 HOH B 55 455 455 HOH HOH . 
O 7 HOH B 56 456 456 HOH HOH . 
O 7 HOH B 57 457 457 HOH HOH . 
O 7 HOH B 58 458 458 HOH HOH . 
O 7 HOH B 59 459 459 HOH HOH . 
O 7 HOH B 60 460 460 HOH HOH . 
O 7 HOH B 61 461 461 HOH HOH . 
O 7 HOH B 62 462 462 HOH HOH . 
O 7 HOH B 63 463 463 HOH HOH . 
O 7 HOH B 64 464 464 HOH HOH . 
O 7 HOH B 65 465 465 HOH HOH . 
O 7 HOH B 66 466 466 HOH HOH . 
O 7 HOH B 67 467 467 HOH HOH . 
O 7 HOH B 68 468 468 HOH HOH . 
O 7 HOH B 69 469 469 HOH HOH . 
O 7 HOH B 70 470 470 HOH HOH . 
O 7 HOH B 71 471 471 HOH HOH . 
O 7 HOH B 72 472 472 HOH HOH . 
O 7 HOH B 73 473 473 HOH HOH . 
O 7 HOH B 74 474 474 HOH HOH . 
O 7 HOH B 75 475 475 HOH HOH . 
O 7 HOH B 76 476 476 HOH HOH . 
O 7 HOH B 77 477 477 HOH HOH . 
O 7 HOH B 78 478 478 HOH HOH . 
O 7 HOH B 79 479 479 HOH HOH . 
O 7 HOH B 80 480 480 HOH HOH . 
O 7 HOH B 81 481 481 HOH HOH . 
O 7 HOH B 82 482 482 HOH HOH . 
O 7 HOH B 83 483 483 HOH HOH . 
O 7 HOH B 84 484 484 HOH HOH . 
O 7 HOH B 85 485 485 HOH HOH . 
O 7 HOH B 86 486 486 HOH HOH . 
O 7 HOH B 87 487 487 HOH HOH . 
O 7 HOH B 88 488 488 HOH HOH . 
O 7 HOH B 89 489 489 HOH HOH . 
O 7 HOH B 90 490 490 HOH HOH . 
O 7 HOH B 91 491 491 HOH HOH . 
O 7 HOH B 92 492 492 HOH HOH . 
O 7 HOH B 93 493 493 HOH HOH . 
O 7 HOH B 94 494 494 HOH HOH . 
O 7 HOH B 95 495 495 HOH HOH . 
O 7 HOH B 96 496 496 HOH HOH . 
O 7 HOH B 97 497 497 HOH HOH . 
O 7 HOH B 98 498 498 HOH HOH . 
O 7 HOH B 99 499 499 HOH HOH . 
O 7 HOH B 100 500 500 HOH HOH . 
O 7 HOH B 101 501 501 HOH HOH . 
O 7 HOH B 102 502 502 HOH HOH . 
O 7 HOH B 103 503 503 HOH HOH . 
O 7 HOH B 104 504 504 HOH HOH . 
O 7 HOH B 105 505 505 HOH HOH . 
O 7 HOH B 106 506 506 HOH HOH . 
O 7 HOH B 107 507 507 HOH HOH . 
O 7 HOH B 108 508 508 HOH HOH . 
O 7 HOH B 109 509 509 HOH HOH . 
O 7 HOH B 110 510 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P NMN . . . C 2 21.788 10.901 1.257 1 73.49 -1 O3P NMN 301 A 1 
HETATM 2 P P NMN . . . C 2 20.751 9.903 0.801 1 88.07 ? P NMN 301 A 1 
HETATM 3 O O1P NMN . . . C 2 20.024 10.378 -0.43 1 71.28 ? O1P NMN 301 A 1 
HETATM 4 O O2P NMN . . . C 2 21.315 8.509 0.636 1 55.47 -1 O2P NMN 301 A 1 
HETATM 5 O O5R NMN . . . C 2 19.644 9.834 1.984 1 67.79 ? O5R NMN 301 A 1 
HETATM 6 C C5R NMN . . . C 2 19.822 8.893 3.08 1 71.08 ? C5R NMN 301 A 1 
HETATM 7 C C4R NMN . . . C 2 19.835 9.62 4.404 1 59.75 ? C4R NMN 301 A 1 
HETATM 8 O O4R NMN . . . C 2 18.633 9.341 5.147 1 60.14 ? O4R NMN 301 A 1 
HETATM 9 C C3R NMN . . . C 2 20.963 9.235 5.376 1 58.51 ? C3R NMN 301 A 1 
HETATM 10 O O3R NMN . . . C 2 21.996 10.208 5.381 1 64.73 ? O3R NMN 301 A 1 
HETATM 11 C C2R NMN . . . C 2 20.304 9.187 6.76 1 54.04 ? C2R NMN 301 A 1 
HETATM 12 O O2R NMN . . . C 2 20.884 10.083 7.686 1 59 ? O2R NMN 301 A 1 
HETATM 13 C C1R NMN . . . C 2 18.903 9.723 6.482 1 57.35 ? C1R NMN 301 A 1 
HETATM 14 N N1 NMN . . . C 2 17.909 9.145 7.403 1 65.51 ? N1 NMN 301 A 1 
HETATM 15 C C2 NMN . . . C 2 17.447 7.862 7.216 1 60.96 ? C2 NMN 301 A 1 
HETATM 16 C C3 NMN . . . C 2 16.528 7.331 8.115 1 58.41 ? C3 NMN 301 A 1 
HETATM 17 C C7 NMN . . . C 2 16.006 5.942 7.924 1 57.74 ? C7 NMN 301 A 1 
HETATM 18 O O7 NMN . . . C 2 16.557 5.183 7.115 1 54.73 ? O7 NMN 301 A 1 
HETATM 19 N N7 NMN . . . C 2 14.97 5.558 8.656 1 59.83 ? N7 NMN 301 A 1 
HETATM 20 C C4 NMN . . . C 2 16.105 8.081 9.2 1 62.37 ? C4 NMN 301 A 1 
HETATM 21 C C5 NMN . . . C 2 16.596 9.357 9.385 1 57.81 ? C5 NMN 301 A 1 
HETATM 22 C C6 NMN . . . C 2 17.503 9.877 8.491 1 54.08 ? C6 NMN 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#