data_9FYD # _model_server_result.job_id WEkADm1uU5NyUc_Ir8_ldw _model_server_result.datetime_utc '2024-10-18 16:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":501}' # _entry.id 9FYD # _exptl.entry_id 9FYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FYD _cell.length_a 104.14 _cell.length_b 157.67 _cell.length_c 179.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc10 H MG MG . A MG 502 1_555 X O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc11 H MG MG . A MG 502 1_555 X O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 H MG MG . A MG 502 1_555 X O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc13 H MG MG . A MG 502 1_555 X O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc14 J CA CA . A CA 504 1_555 X O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? metalc ? metalc15 J CA CA . A CA 504 1_555 X O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc16 J CA CA . A CA 504 1_555 BA O HOH . E HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc17 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc18 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc19 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc20 L MG MG . B MG 502 1_555 Y O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc21 L MG MG . B MG 502 1_555 Y O HOH . B HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc22 L MG MG . B MG 502 1_555 Y O HOH . B HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc23 L MG MG . B MG 502 1_555 Z O HOH . C HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc24 M CA CA . B CA 503 4_455 C OE2 GLU 284 C GLU 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc25 M CA CA . B CA 503 1_555 Z O HOH . C HOH 612 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc26 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc27 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc28 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc29 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc30 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc31 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc32 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc33 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc34 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc35 P MG MG . C MG 502 1_555 Z O HOH . C HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc36 P MG MG . C MG 502 1_555 Z O HOH . C HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc37 P MG MG . C MG 502 1_555 Z O HOH . C HOH 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc38 P MG MG . C MG 502 1_555 Z O HOH . C HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc39 Q CA CA . C CA 503 1_555 Z O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc40 D OE1 GLN 11 D GLN 11 1_555 U MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc41 R O1A GDP . D GDP 501 1_555 U MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc42 U MG MG . D MG 504 1_555 AA O HOH . D HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc43 U MG MG . D MG 504 1_555 AA O HOH . D HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc44 U MG MG . D MG 504 1_555 AA O HOH . D HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc45 F OE1 GLU 331 F GLU 331 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc46 F OE2 GLU 331 F GLU 331 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc47 V O3G ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc48 V O1B ACP . F ACP 401 1_555 W MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 226 n n PB O2B GDP sing 227 n n PB O3B GDP sing 228 n n PB O3A GDP sing 229 n n O2B HOB2 GDP sing 230 n n O3B HOB3 GDP sing 231 n n O3A PA GDP sing 232 n n PA O1A GDP doub 233 n n PA O2A GDP sing 234 n n PA O5' GDP sing 235 n n O2A HOA2 GDP sing 236 n n O5' C5' GDP sing 237 n n C5' C4' GDP sing 238 n n C5' H5' GDP sing 239 n n C5' "H5''" GDP sing 240 n n C4' O4' GDP sing 241 n n C4' C3' GDP sing 242 n n C4' H4' GDP sing 243 n n O4' C1' GDP sing 244 n n C3' O3' GDP sing 245 n n C3' C2' GDP sing 246 n n C3' H3' GDP sing 247 n n O3' HO3' GDP sing 248 n n C2' O2' GDP sing 249 n n C2' C1' GDP sing 250 n n C2' H2' GDP sing 251 n n O2' HO2' GDP sing 252 n n C1' N9 GDP sing 253 n n C1' H1' GDP sing 254 n n N9 C8 GDP sing 255 n y N9 C4 GDP sing 256 n y C8 N7 GDP doub 257 n y C8 H8 GDP sing 258 n n N7 C5 GDP sing 259 n y C5 C6 GDP sing 260 n n C5 C4 GDP doub 261 n y C6 O6 GDP doub 262 n n C6 N1 GDP sing 263 n n N1 C2 GDP sing 264 n n N1 HN1 GDP sing 265 n n C2 N2 GDP sing 266 n n C2 N3 GDP doub 267 n n N2 HN21 GDP sing 268 n n N2 HN22 GDP sing 269 n n N3 C4 GDP sing 270 n n # _atom_sites.entry_id 9FYD _atom_sites.fract_transf_matrix[1][1] 0.009602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 7 CA A 1 504 504 CA CA . K 8 GDP B 1 501 501 GDP GDP . L 6 MG B 1 502 502 MG MG . M 7 CA B 1 503 503 CA CA . N 9 MES B 1 504 504 MES MES . O 5 GTP C 1 501 501 GTP GTP . P 6 MG C 1 502 502 MG MG . Q 7 CA C 1 503 503 CA CA . R 8 GDP D 1 501 501 GDP GDP . S 10 A1IHR D 1 502 603 A1IHR DRG . T 10 A1IHR D 1 503 604 A1IHR DRG . U 6 MG D 1 504 1 MG MG . V 11 ACP F 1 401 401 ACP ACP . W 6 MG F 1 402 501 MG MG . X 12 HOH A 1 601 236 HOH HOH . X 12 HOH A 2 602 263 HOH HOH . X 12 HOH A 3 603 376 HOH HOH . X 12 HOH A 4 604 8 HOH HOH . X 12 HOH A 5 605 86 HOH HOH . X 12 HOH A 6 606 167 HOH HOH . X 12 HOH A 7 607 398 HOH HOH . X 12 HOH A 8 608 41 HOH HOH . X 12 HOH A 9 609 6 HOH HOH . X 12 HOH A 10 610 229 HOH HOH . X 12 HOH A 11 611 70 HOH HOH . X 12 HOH A 12 612 101 HOH HOH . X 12 HOH A 13 613 219 HOH HOH . X 12 HOH A 14 614 201 HOH HOH . X 12 HOH A 15 615 301 HOH HOH . X 12 HOH A 16 616 13 HOH HOH . X 12 HOH A 17 617 154 HOH HOH . X 12 HOH A 18 618 125 HOH HOH . X 12 HOH A 19 619 321 HOH HOH . X 12 HOH A 20 620 214 HOH HOH . X 12 HOH A 21 621 14 HOH HOH . X 12 HOH A 22 622 260 HOH HOH . X 12 HOH A 23 623 65 HOH HOH . X 12 HOH A 24 624 45 HOH HOH . X 12 HOH A 25 625 241 HOH HOH . X 12 HOH A 26 626 169 HOH HOH . X 12 HOH A 27 627 149 HOH HOH . X 12 HOH A 28 628 331 HOH HOH . X 12 HOH A 29 629 334 HOH HOH . X 12 HOH A 30 630 196 HOH HOH . X 12 HOH A 31 631 145 HOH HOH . X 12 HOH A 32 632 225 HOH HOH . X 12 HOH A 33 633 389 HOH HOH . X 12 HOH A 34 634 262 HOH HOH . X 12 HOH A 35 635 58 HOH HOH . X 12 HOH A 36 636 170 HOH HOH . X 12 HOH A 37 637 168 HOH HOH . X 12 HOH A 38 638 25 HOH HOH . X 12 HOH A 39 639 336 HOH HOH . X 12 HOH A 40 640 322 HOH HOH . X 12 HOH A 41 641 318 HOH HOH . X 12 HOH A 42 642 84 HOH HOH . X 12 HOH A 43 643 261 HOH HOH . X 12 HOH A 44 644 197 HOH HOH . X 12 HOH A 45 645 16 HOH HOH . X 12 HOH A 46 646 353 HOH HOH . X 12 HOH A 47 647 55 HOH HOH . X 12 HOH A 48 648 64 HOH HOH . X 12 HOH A 49 649 359 HOH HOH . X 12 HOH A 50 650 302 HOH HOH . X 12 HOH A 51 651 395 HOH HOH . X 12 HOH A 52 652 282 HOH HOH . X 12 HOH A 53 653 286 HOH HOH . X 12 HOH A 54 654 366 HOH HOH . X 12 HOH A 55 655 232 HOH HOH . Y 12 HOH B 1 601 150 HOH HOH . Y 12 HOH B 2 602 46 HOH HOH . Y 12 HOH B 3 603 390 HOH HOH . Y 12 HOH B 4 604 59 HOH HOH . Y 12 HOH B 5 605 73 HOH HOH . Y 12 HOH B 6 606 367 HOH HOH . Y 12 HOH B 7 607 227 HOH HOH . Y 12 HOH B 8 608 111 HOH HOH . Y 12 HOH B 9 609 181 HOH HOH . Y 12 HOH B 10 610 54 HOH HOH . Y 12 HOH B 11 611 217 HOH HOH . Y 12 HOH B 12 612 315 HOH HOH . Y 12 HOH B 13 613 342 HOH HOH . Y 12 HOH B 14 614 340 HOH HOH . Y 12 HOH B 15 615 298 HOH HOH . Y 12 HOH B 16 616 330 HOH HOH . Y 12 HOH B 17 617 316 HOH HOH . Y 12 HOH B 18 618 206 HOH HOH . Y 12 HOH B 19 619 177 HOH HOH . Y 12 HOH B 20 620 119 HOH HOH . Y 12 HOH B 21 621 215 HOH HOH . Y 12 HOH B 22 622 350 HOH HOH . Y 12 HOH B 23 623 36 HOH HOH . Y 12 HOH B 24 624 224 HOH HOH . Y 12 HOH B 25 625 209 HOH HOH . Y 12 HOH B 26 626 173 HOH HOH . Y 12 HOH B 27 627 203 HOH HOH . Y 12 HOH B 28 628 108 HOH HOH . Y 12 HOH B 29 629 305 HOH HOH . Y 12 HOH B 30 630 233 HOH HOH . Y 12 HOH B 31 631 163 HOH HOH . Y 12 HOH B 32 632 211 HOH HOH . Y 12 HOH B 33 633 171 HOH HOH . Y 12 HOH B 34 634 222 HOH HOH . Y 12 HOH B 35 635 135 HOH HOH . Y 12 HOH B 36 636 212 HOH HOH . Y 12 HOH B 37 637 379 HOH HOH . Y 12 HOH B 38 638 210 HOH HOH . Y 12 HOH B 39 639 371 HOH HOH . Y 12 HOH B 40 640 166 HOH HOH . Y 12 HOH B 41 641 82 HOH HOH . Y 12 HOH B 42 642 338 HOH HOH . Y 12 HOH B 43 643 385 HOH HOH . Y 12 HOH B 44 644 332 HOH HOH . Y 12 HOH B 45 645 235 HOH HOH . Y 12 HOH B 46 646 288 HOH HOH . Y 12 HOH B 47 647 377 HOH HOH . Y 12 HOH B 48 648 208 HOH HOH . Y 12 HOH B 49 649 361 HOH HOH . Y 12 HOH B 50 650 242 HOH HOH . Y 12 HOH B 51 651 307 HOH HOH . Y 12 HOH B 52 652 147 HOH HOH . Y 12 HOH B 53 653 292 HOH HOH . Y 12 HOH B 54 654 306 HOH HOH . Y 12 HOH B 55 655 216 HOH HOH . Y 12 HOH B 56 656 341 HOH HOH . Y 12 HOH B 57 657 308 HOH HOH . Y 12 HOH B 58 658 246 HOH HOH . Y 12 HOH B 59 659 344 HOH HOH . Y 12 HOH B 60 660 297 HOH HOH . Y 12 HOH B 61 661 140 HOH HOH . Y 12 HOH B 62 662 368 HOH HOH . Y 12 HOH B 63 663 296 HOH HOH . Y 12 HOH B 64 664 312 HOH HOH . Y 12 HOH B 65 665 295 HOH HOH . Y 12 HOH B 66 666 141 HOH HOH . Y 12 HOH B 67 667 137 HOH HOH . Y 12 HOH B 68 668 253 HOH HOH . Z 12 HOH C 1 601 50 HOH HOH . Z 12 HOH C 2 602 33 HOH HOH . Z 12 HOH C 3 603 138 HOH HOH . Z 12 HOH C 4 604 274 HOH HOH . Z 12 HOH C 5 605 1 HOH HOH . Z 12 HOH C 6 606 251 HOH HOH . Z 12 HOH C 7 607 254 HOH HOH . Z 12 HOH C 8 608 116 HOH HOH . Z 12 HOH C 9 609 103 HOH HOH . Z 12 HOH C 10 610 37 HOH HOH . Z 12 HOH C 11 611 10 HOH HOH . Z 12 HOH C 12 612 218 HOH HOH . Z 12 HOH C 13 613 5 HOH HOH . Z 12 HOH C 14 614 18 HOH HOH . Z 12 HOH C 15 615 191 HOH HOH . Z 12 HOH C 16 616 47 HOH HOH . Z 12 HOH C 17 617 190 HOH HOH . Z 12 HOH C 18 618 75 HOH HOH . Z 12 HOH C 19 619 188 HOH HOH . Z 12 HOH C 20 620 245 HOH HOH . Z 12 HOH C 21 621 31 HOH HOH . Z 12 HOH C 22 622 100 HOH HOH . Z 12 HOH C 23 623 78 HOH HOH . Z 12 HOH C 24 624 193 HOH HOH . Z 12 HOH C 25 625 42 HOH HOH . Z 12 HOH C 26 626 194 HOH HOH . Z 12 HOH C 27 627 30 HOH HOH . Z 12 HOH C 28 628 178 HOH HOH . Z 12 HOH C 29 629 348 HOH HOH . Z 12 HOH C 30 630 107 HOH HOH . Z 12 HOH C 31 631 51 HOH HOH . Z 12 HOH C 32 632 189 HOH HOH . Z 12 HOH C 33 633 172 HOH HOH . Z 12 HOH C 34 634 61 HOH HOH . Z 12 HOH C 35 635 27 HOH HOH . Z 12 HOH C 36 636 293 HOH HOH . Z 12 HOH C 37 637 79 HOH HOH . Z 12 HOH C 38 638 182 HOH HOH . Z 12 HOH C 39 639 195 HOH HOH . Z 12 HOH C 40 640 69 HOH HOH . Z 12 HOH C 41 641 237 HOH HOH . Z 12 HOH C 42 642 115 HOH HOH . Z 12 HOH C 43 643 158 HOH HOH . Z 12 HOH C 44 644 257 HOH HOH . Z 12 HOH C 45 645 102 HOH HOH . Z 12 HOH C 46 646 373 HOH HOH . Z 12 HOH C 47 647 49 HOH HOH . Z 12 HOH C 48 648 325 HOH HOH . Z 12 HOH C 49 649 183 HOH HOH . Z 12 HOH C 50 650 77 HOH HOH . Z 12 HOH C 51 651 81 HOH HOH . Z 12 HOH C 52 652 120 HOH HOH . Z 12 HOH C 53 653 105 HOH HOH . Z 12 HOH C 54 654 89 HOH HOH . Z 12 HOH C 55 655 22 HOH HOH . Z 12 HOH C 56 656 360 HOH HOH . Z 12 HOH C 57 657 213 HOH HOH . Z 12 HOH C 58 658 134 HOH HOH . Z 12 HOH C 59 659 323 HOH HOH . Z 12 HOH C 60 660 4 HOH HOH . Z 12 HOH C 61 661 96 HOH HOH . Z 12 HOH C 62 662 186 HOH HOH . Z 12 HOH C 63 663 122 HOH HOH . Z 12 HOH C 64 664 364 HOH HOH . Z 12 HOH C 65 665 152 HOH HOH . Z 12 HOH C 66 666 52 HOH HOH . Z 12 HOH C 67 667 144 HOH HOH . Z 12 HOH C 68 668 259 HOH HOH . Z 12 HOH C 69 669 309 HOH HOH . Z 12 HOH C 70 670 328 HOH HOH . Z 12 HOH C 71 671 165 HOH HOH . Z 12 HOH C 72 672 313 HOH HOH . Z 12 HOH C 73 673 345 HOH HOH . Z 12 HOH C 74 674 192 HOH HOH . Z 12 HOH C 75 675 223 HOH HOH . Z 12 HOH C 76 676 207 HOH HOH . Z 12 HOH C 77 677 88 HOH HOH . Z 12 HOH C 78 678 347 HOH HOH . Z 12 HOH C 79 679 23 HOH HOH . Z 12 HOH C 80 680 20 HOH HOH . Z 12 HOH C 81 681 123 HOH HOH . Z 12 HOH C 82 682 12 HOH HOH . Z 12 HOH C 83 683 319 HOH HOH . Z 12 HOH C 84 684 372 HOH HOH . Z 12 HOH C 85 685 104 HOH HOH . Z 12 HOH C 86 686 185 HOH HOH . Z 12 HOH C 87 687 380 HOH HOH . Z 12 HOH C 88 688 174 HOH HOH . Z 12 HOH C 89 689 139 HOH HOH . Z 12 HOH C 90 690 66 HOH HOH . Z 12 HOH C 91 691 91 HOH HOH . Z 12 HOH C 92 692 43 HOH HOH . Z 12 HOH C 93 693 230 HOH HOH . Z 12 HOH C 94 694 356 HOH HOH . Z 12 HOH C 95 695 95 HOH HOH . Z 12 HOH C 96 696 21 HOH HOH . Z 12 HOH C 97 697 133 HOH HOH . Z 12 HOH C 98 698 255 HOH HOH . Z 12 HOH C 99 699 204 HOH HOH . Z 12 HOH C 100 700 231 HOH HOH . Z 12 HOH C 101 701 17 HOH HOH . Z 12 HOH C 102 702 113 HOH HOH . Z 12 HOH C 103 703 68 HOH HOH . Z 12 HOH C 104 704 243 HOH HOH . Z 12 HOH C 105 705 35 HOH HOH . Z 12 HOH C 106 706 29 HOH HOH . Z 12 HOH C 107 707 266 HOH HOH . Z 12 HOH C 108 708 202 HOH HOH . Z 12 HOH C 109 709 132 HOH HOH . Z 12 HOH C 110 710 339 HOH HOH . Z 12 HOH C 111 711 272 HOH HOH . Z 12 HOH C 112 712 114 HOH HOH . Z 12 HOH C 113 713 7 HOH HOH . Z 12 HOH C 114 714 200 HOH HOH . Z 12 HOH C 115 715 374 HOH HOH . Z 12 HOH C 116 716 56 HOH HOH . Z 12 HOH C 117 717 256 HOH HOH . Z 12 HOH C 118 718 265 HOH HOH . Z 12 HOH C 119 719 57 HOH HOH . Z 12 HOH C 120 720 63 HOH HOH . Z 12 HOH C 121 721 349 HOH HOH . Z 12 HOH C 122 722 333 HOH HOH . Z 12 HOH C 123 723 370 HOH HOH . Z 12 HOH C 124 724 80 HOH HOH . Z 12 HOH C 125 725 375 HOH HOH . Z 12 HOH C 126 726 283 HOH HOH . Z 12 HOH C 127 727 304 HOH HOH . Z 12 HOH C 128 728 386 HOH HOH . Z 12 HOH C 129 729 303 HOH HOH . Z 12 HOH C 130 730 40 HOH HOH . Z 12 HOH C 131 731 127 HOH HOH . Z 12 HOH C 132 732 249 HOH HOH . Z 12 HOH C 133 733 142 HOH HOH . Z 12 HOH C 134 734 300 HOH HOH . Z 12 HOH C 135 735 369 HOH HOH . Z 12 HOH C 136 736 314 HOH HOH . Z 12 HOH C 137 737 187 HOH HOH . Z 12 HOH C 138 738 93 HOH HOH . Z 12 HOH C 139 739 269 HOH HOH . Z 12 HOH C 140 740 270 HOH HOH . Z 12 HOH C 141 741 268 HOH HOH . Z 12 HOH C 142 742 143 HOH HOH . Z 12 HOH C 143 743 267 HOH HOH . Z 12 HOH C 144 744 381 HOH HOH . Z 12 HOH C 145 745 276 HOH HOH . Z 12 HOH C 146 746 394 HOH HOH . Z 12 HOH C 147 747 98 HOH HOH . Z 12 HOH C 148 748 264 HOH HOH . Z 12 HOH C 149 749 250 HOH HOH . Z 12 HOH C 150 750 128 HOH HOH . Z 12 HOH C 151 751 275 HOH HOH . Z 12 HOH C 152 752 248 HOH HOH . Z 12 HOH C 153 753 87 HOH HOH . Z 12 HOH C 154 754 343 HOH HOH . Z 12 HOH C 155 755 247 HOH HOH . Z 12 HOH C 156 756 252 HOH HOH . Z 12 HOH C 157 757 277 HOH HOH . AA 12 HOH D 1 601 85 HOH HOH . AA 12 HOH D 2 602 397 HOH HOH . AA 12 HOH D 3 603 363 HOH HOH . AA 12 HOH D 4 604 117 HOH HOH . AA 12 HOH D 5 605 2 HOH HOH . AA 12 HOH D 6 606 337 HOH HOH . AA 12 HOH D 7 607 32 HOH HOH . AA 12 HOH D 8 608 3 HOH HOH . AA 12 HOH D 9 609 26 HOH HOH . AA 12 HOH D 10 610 184 HOH HOH . AA 12 HOH D 11 611 90 HOH HOH . AA 12 HOH D 12 612 238 HOH HOH . AA 12 HOH D 13 613 164 HOH HOH . AA 12 HOH D 14 614 19 HOH HOH . AA 12 HOH D 15 615 365 HOH HOH . AA 12 HOH D 16 616 34 HOH HOH . AA 12 HOH D 17 617 280 HOH HOH . AA 12 HOH D 18 618 326 HOH HOH . AA 12 HOH D 19 619 354 HOH HOH . AA 12 HOH D 20 620 155 HOH HOH . AA 12 HOH D 21 621 387 HOH HOH . AA 12 HOH D 22 622 239 HOH HOH . AA 12 HOH D 23 623 383 HOH HOH . AA 12 HOH D 24 624 220 HOH HOH . AA 12 HOH D 25 625 400 HOH HOH . AA 12 HOH D 26 626 299 HOH HOH . AA 12 HOH D 27 627 94 HOH HOH . AA 12 HOH D 28 628 317 HOH HOH . AA 12 HOH D 29 629 320 HOH HOH . AA 12 HOH D 30 630 393 HOH HOH . AA 12 HOH D 31 631 399 HOH HOH . AA 12 HOH D 32 632 351 HOH HOH . AA 12 HOH D 33 633 311 HOH HOH . AA 12 HOH D 34 634 205 HOH HOH . AA 12 HOH D 35 635 357 HOH HOH . AA 12 HOH D 36 636 271 HOH HOH . AA 12 HOH D 37 637 382 HOH HOH . AA 12 HOH D 38 638 324 HOH HOH . AA 12 HOH D 39 639 157 HOH HOH . AA 12 HOH D 40 640 401 HOH HOH . AA 12 HOH D 41 641 402 HOH HOH . BA 12 HOH E 1 201 378 HOH HOH . BA 12 HOH E 2 202 151 HOH HOH . BA 12 HOH E 3 203 153 HOH HOH . BA 12 HOH E 4 204 118 HOH HOH . BA 12 HOH E 5 205 39 HOH HOH . BA 12 HOH E 6 206 136 HOH HOH . BA 12 HOH E 7 207 67 HOH HOH . BA 12 HOH E 8 208 388 HOH HOH . BA 12 HOH E 9 209 362 HOH HOH . BA 12 HOH E 10 210 352 HOH HOH . BA 12 HOH E 11 211 234 HOH HOH . BA 12 HOH E 12 212 228 HOH HOH . BA 12 HOH E 13 213 392 HOH HOH . BA 12 HOH E 14 214 279 HOH HOH . BA 12 HOH E 15 215 240 HOH HOH . BA 12 HOH E 16 216 329 HOH HOH . BA 12 HOH E 17 217 327 HOH HOH . BA 12 HOH E 18 218 110 HOH HOH . BA 12 HOH E 19 219 273 HOH HOH . BA 12 HOH E 20 220 278 HOH HOH . BA 12 HOH E 21 221 396 HOH HOH . CA 12 HOH F 1 501 121 HOH HOH . CA 12 HOH F 2 502 346 HOH HOH . CA 12 HOH F 3 503 290 HOH HOH . CA 12 HOH F 4 504 44 HOH HOH . CA 12 HOH F 5 505 284 HOH HOH . CA 12 HOH F 6 506 289 HOH HOH . CA 12 HOH F 7 507 175 HOH HOH . CA 12 HOH F 8 508 38 HOH HOH . CA 12 HOH F 9 509 221 HOH HOH . CA 12 HOH F 10 510 358 HOH HOH . CA 12 HOH F 11 511 310 HOH HOH . CA 12 HOH F 12 512 384 HOH HOH . CA 12 HOH F 13 513 106 HOH HOH . CA 12 HOH F 14 514 355 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . R 8 25.484 -9.584 -43.994 1 70.09 ? PB GDP 501 D 1 HETATM 2 O O1B GDP . . . R 8 24.7 -9.114 -45.197 1 71.36 ? O1B GDP 501 D 1 HETATM 3 O O2B GDP . . . R 8 25.711 -8.414 -43.072 1 88.88 ? O2B GDP 501 D 1 HETATM 4 O O3B GDP . . . R 8 26.841 -10.093 -44.405 1 79.24 ? O3B GDP 501 D 1 HETATM 5 O O3A GDP . . . R 8 24.664 -10.734 -43.21 1 67.03 ? O3A GDP 501 D 1 HETATM 6 P PA GDP . . . R 8 23.044 -10.741 -43.112 1 74.42 ? PA GDP 501 D 1 HETATM 7 O O1A GDP . . . R 8 22.365 -11.055 -44.419 1 79.66 ? O1A GDP 501 D 1 HETATM 8 O O2A GDP . . . R 8 22.531 -9.407 -42.642 1 76.99 ? O2A GDP 501 D 1 HETATM 9 O O5' GDP . . . R 8 22.807 -11.862 -41.971 1 69.16 ? O5' GDP 501 D 1 HETATM 10 C C5' GDP . . . R 8 21.804 -12.865 -42.071 1 66.42 ? C5' GDP 501 D 1 HETATM 11 C C4' GDP . . . R 8 20.904 -12.719 -40.864 1 65.83 ? C4' GDP 501 D 1 HETATM 12 O O4' GDP . . . R 8 20.284 -11.432 -40.945 1 73.69 ? O4' GDP 501 D 1 HETATM 13 C C3' GDP . . . R 8 19.804 -13.752 -40.926 1 72.73 ? C3' GDP 501 D 1 HETATM 14 O O3' GDP . . . R 8 19.598 -14.247 -39.606 1 67.75 ? O3' GDP 501 D 1 HETATM 15 C C2' GDP . . . R 8 18.577 -12.996 -41.39 1 66.05 ? C2' GDP 501 D 1 HETATM 16 O O2' GDP . . . R 8 17.422 -13.465 -40.703 1 77.26 ? O2' GDP 501 D 1 HETATM 17 C C1' GDP . . . R 8 18.866 -11.569 -40.994 1 66.63 ? C1' GDP 501 D 1 HETATM 18 N N9 GDP . . . R 8 18.276 -10.605 -41.959 1 66.58 ? N9 GDP 501 D 1 HETATM 19 C C8 GDP . . . R 8 18.775 -10.283 -43.157 1 68.98 ? C8 GDP 501 D 1 HETATM 20 N N7 GDP . . . R 8 17.979 -9.357 -43.764 1 72.36 ? N7 GDP 501 D 1 HETATM 21 C C5 GDP . . . R 8 16.958 -9.083 -42.931 1 65.14 ? C5 GDP 501 D 1 HETATM 22 C C6 GDP . . . R 8 15.753 -8.21 -42.909 1 72.19 ? C6 GDP 501 D 1 HETATM 23 O O6 GDP . . . R 8 15.482 -7.464 -43.877 1 78.2 ? O6 GDP 501 D 1 HETATM 24 N N1 GDP . . . R 8 14.951 -8.229 -41.832 1 65.7 ? N1 GDP 501 D 1 HETATM 25 C C2 GDP . . . R 8 15.196 -9.015 -40.763 1 64.76 ? C2 GDP 501 D 1 HETATM 26 N N2 GDP . . . R 8 14.349 -8.993 -39.709 1 67.97 ? N2 GDP 501 D 1 HETATM 27 N N3 GDP . . . R 8 16.274 -9.831 -40.719 1 71.63 ? N3 GDP 501 D 1 HETATM 28 C C4 GDP . . . R 8 17.162 -9.914 -41.729 1 68.48 ? C4 GDP 501 D 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #