data_9FYF
#
_model_server_result.job_id            Ot0bdelY6EgAjmKWDwvhhA 
_model_server_result.datetime_utc      '2024-10-12 13:25:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9fyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":409}' 
#
_entry.id    9FYF 
#
_exptl.entry_id    9FYF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.564 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]-4-fluoranyl-2-[(3~{S})-3-(methylamino)piperidin-1-yl]phenyl]propanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9FYF 
_cell.length_a            127.184 
_cell.length_b            127.184 
_cell.length_c            124.026 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9FYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,T 1 1 
B,L,M,N,O,P,Q,R,S,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 K N N 
? 3 O N N 
#
_chem_comp.formula           'C25 H30 F N9 O' 
_chem_comp.formula_weight    491.564 
_chem_comp.id                A1IG6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]-4-fluoranyl-2-[(3~{S})-3-(methylamino)piperidin-1-yl]phenyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7-[(1R,5S,6s)-6-amino-3-azabicyclo[3.1.0]hex-3-yl]-1-(2,4-difluorophenyl)-6-fluoro-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carboxylic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 A1IG6 sing 1 n n 
C21 C19 A1IG6 sing 2 n n 
C20 C19 A1IG6 sing 3 n n 
F24 C23 A1IG6 sing 4 n n 
C19 N18 A1IG6 sing 5 n n 
C23 C25 A1IG6 doub 6 n y 
C23 C6 A1IG6 sing 7 n y 
C25 C26 A1IG6 sing 8 n y 
C22 C17 A1IG6 doub 9 n y 
C22 C8 A1IG6 sing 10 n y 
N18 C17 A1IG6 sing 11 n n 
N7 C6 A1IG6 sing 12 n n 
N7 C8 A1IG6 sing 13 n n 
C34 C33 A1IG6 sing 14 n n 
C34 N27 A1IG6 sing 15 n n 
C6 C5 A1IG6 doub 16 n y 
C17 N16 A1IG6 sing 17 n y 
C8 N9 A1IG6 doub 18 n y 
C26 N27 A1IG6 sing 19 n n 
C26 C4 A1IG6 doub 20 n y 
C33 C32 A1IG6 sing 21 n n 
N27 C28 A1IG6 sing 22 n n 
C5 C4 A1IG6 sing 23 n y 
C4 N3 A1IG6 sing 24 n n 
N16 C10 A1IG6 sing 25 n y 
N16 N15 A1IG6 sing 26 n y 
N9 C10 A1IG6 sing 27 n y 
C32 C29 A1IG6 sing 28 n n 
C28 C29 A1IG6 sing 29 n n 
C10 C11 A1IG6 doub 30 n y 
N15 C14 A1IG6 doub 31 n y 
C29 N30 A1IG6 sing 32 n n 
N3 C2 A1IG6 sing 33 n n 
C11 C14 A1IG6 sing 34 n y 
C11 C12 A1IG6 sing 35 n n 
N30 C31 A1IG6 sing 36 n n 
C2 C35 A1IG6 sing 37 n n 
C2 O1 A1IG6 doub 38 n n 
C35 C36 A1IG6 sing 39 n n 
C12 N13 A1IG6 trip 40 n n 
C14 H1 A1IG6 sing 41 n n 
C19 H2 A1IG6 sing 42 n n 
C20 H3 A1IG6 sing 43 n n 
C20 H4 A1IG6 sing 44 n n 
C21 H5 A1IG6 sing 45 n n 
C21 H6 A1IG6 sing 46 n n 
C22 H7 A1IG6 sing 47 n n 
C25 H8 A1IG6 sing 48 n n 
N3 H9 A1IG6 sing 49 n n 
C5 H10 A1IG6 sing 50 n n 
N7 H11 A1IG6 sing 51 n n 
N18 H12 A1IG6 sing 52 n n 
C28 H13 A1IG6 sing 53 n n 
C28 H14 A1IG6 sing 54 n n 
C29 H15 A1IG6 sing 55 n n 
N30 H16 A1IG6 sing 56 n n 
C31 H18 A1IG6 sing 57 n n 
C31 H19 A1IG6 sing 58 n n 
C31 H20 A1IG6 sing 59 n n 
C32 H21 A1IG6 sing 60 n n 
C32 H22 A1IG6 sing 61 n n 
C33 H23 A1IG6 sing 62 n n 
C33 H24 A1IG6 sing 63 n n 
C34 H25 A1IG6 sing 64 n n 
C34 H26 A1IG6 sing 65 n n 
C35 H27 A1IG6 sing 66 n n 
C35 H28 A1IG6 sing 67 n n 
C36 H29 A1IG6 sing 68 n n 
C36 H30 A1IG6 sing 69 n n 
C36 H31 A1IG6 sing 70 n n 
#
_atom_sites.entry_id                     9FYF 
_atom_sites.fract_transf_matrix[1][1]    0.007863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007863 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 B 1 401 1 SO4 SO4 . 
D 2 SO4 B 1 402 330 SO4 SO4 . 
E 2 SO4 B 1 403 331 SO4 SO4 . 
F 2 SO4 B 1 404 332 SO4 SO4 . 
G 2 SO4 B 1 405 334 SO4 SO4 . 
H 2 SO4 B 1 406 336 SO4 SO4 . 
I 2 SO4 B 1 407 8 SO4 SO4 . 
J 2 SO4 B 1 408 10 SO4 SO4 . 
K 3 A1IG6 B 1 409 401 A1IG6 TR6 . 
L 2 SO4 A 1 401 2 SO4 SO4 . 
M 2 SO4 A 1 402 330 SO4 SO4 . 
N 2 SO4 A 1 403 331 SO4 SO4 . 
O 3 A1IG6 A 1 404 401 A1IG6 TR6 . 
P 2 SO4 A 1 405 333 SO4 SO4 . 
Q 2 SO4 A 1 406 335 SO4 SO4 . 
R 2 SO4 A 1 407 2 SO4 SO4 . 
S 2 SO4 A 1 408 6 SO4 SO4 . 
T 4 HOH B 1 501 39 HOH HOH . 
T 4 HOH B 2 502 38 HOH HOH . 
T 4 HOH B 3 503 37 HOH HOH . 
T 4 HOH B 4 504 26 HOH HOH . 
T 4 HOH B 5 505 4 HOH HOH . 
T 4 HOH B 6 506 42 HOH HOH . 
T 4 HOH B 7 507 10 HOH HOH . 
T 4 HOH B 8 508 1 HOH HOH . 
T 4 HOH B 9 509 33 HOH HOH . 
T 4 HOH B 10 510 17 HOH HOH . 
T 4 HOH B 11 511 11 HOH HOH . 
T 4 HOH B 12 512 31 HOH HOH . 
T 4 HOH B 13 513 2 HOH HOH . 
T 4 HOH B 14 514 3 HOH HOH . 
T 4 HOH B 15 515 18 HOH HOH . 
T 4 HOH B 16 516 43 HOH HOH . 
T 4 HOH B 17 517 28 HOH HOH . 
T 4 HOH B 18 518 34 HOH HOH . 
T 4 HOH B 19 519 25 HOH HOH . 
U 4 HOH A 1 501 22 HOH HOH . 
U 4 HOH A 2 502 36 HOH HOH . 
U 4 HOH A 3 503 20 HOH HOH . 
U 4 HOH A 4 504 12 HOH HOH . 
U 4 HOH A 5 505 15 HOH HOH . 
U 4 HOH A 6 506 5 HOH HOH . 
U 4 HOH A 7 507 32 HOH HOH . 
U 4 HOH A 8 508 14 HOH HOH . 
U 4 HOH A 9 509 9 HOH HOH . 
U 4 HOH A 10 510 19 HOH HOH . 
U 4 HOH A 11 511 8 HOH HOH . 
U 4 HOH A 12 512 6 HOH HOH . 
U 4 HOH A 13 513 40 HOH HOH . 
U 4 HOH A 14 514 16 HOH HOH . 
U 4 HOH A 15 515 30 HOH HOH . 
U 4 HOH A 16 516 35 HOH HOH . 
U 4 HOH A 17 517 27 HOH HOH . 
U 4 HOH A 18 518 13 HOH HOH . 
U 4 HOH A 19 519 29 HOH HOH . 
U 4 HOH A 20 520 21 HOH HOH . 
U 4 HOH A 21 521 44 HOH HOH . 
U 4 HOH A 22 522 24 HOH HOH . 
U 4 HOH A 23 523 7 HOH HOH . 
U 4 HOH A 24 524 41 HOH HOH . 
U 4 HOH A 25 525 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1IG6 . . . K 3 -6.104 44.334 25.677 1 52.62 ? C10 A1IG6 409 B 1 
HETATM 2 C C12 A1IG6 . . . K 3 -5.551 44.377 23.226 1 46.77 ? C12 A1IG6 409 B 1 
HETATM 3 N N13 A1IG6 . . . K 3 -4.966 44.771 22.324 1 44.67 ? N13 A1IG6 409 B 1 
HETATM 4 C C14 A1IG6 . . . K 3 -7.089 42.76 24.46 1 53.2 ? C14 A1IG6 409 B 1 
HETATM 5 C C19 A1IG6 . . . K 3 -8.031 43.067 29.906 1 59.04 ? C19 A1IG6 409 B 1 
HETATM 6 C C20 A1IG6 . . . K 3 -9.135 43.917 30.399 1 61.18 ? C20 A1IG6 409 B 1 
HETATM 7 C C21 A1IG6 . . . K 3 -9.192 42.449 30.582 1 60.85 ? C21 A1IG6 409 B 1 
HETATM 8 C C22 A1IG6 . . . K 3 -6.476 44.805 28.302 1 57.55 ? C22 A1IG6 409 B 1 
HETATM 9 C C23 A1IG6 . . . K 3 -3.621 48.549 28.529 1 57.23 ? C23 A1IG6 409 B 1 
HETATM 10 C C25 A1IG6 . . . K 3 -2.666 49.473 28.196 1 57.56 ? C25 A1IG6 409 B 1 
HETATM 11 C C26 A1IG6 . . . K 3 -2.136 49.458 26.911 1 56.82 ? C26 A1IG6 409 B 1 
HETATM 12 O O1 A1IG6 . . . K 3 -2.233 48.097 22.412 1 54.17 ? O1 A1IG6 409 B 1 
HETATM 13 C C2 A1IG6 . . . K 3 -2.773 48.355 23.481 1 57 ? C2 A1IG6 409 B 1 
HETATM 14 N N3 A1IG6 . . . K 3 -2.106 48.396 24.668 1 57.29 ? N3 A1IG6 409 B 1 
HETATM 15 C C4 A1IG6 . . . K 3 -2.588 48.491 25.994 1 54.67 ? C4 A1IG6 409 B 1 
HETATM 16 C C5 A1IG6 . . . K 3 -3.554 47.571 26.376 1 53.52 ? C5 A1IG6 409 B 1 
HETATM 17 C C6 A1IG6 . . . K 3 -4.092 47.59 27.652 1 55.06 ? C6 A1IG6 409 B 1 
HETATM 18 N N7 A1IG6 . . . K 3 -5.12 46.731 28.076 1 56.06 ? N7 A1IG6 409 B 1 
HETATM 19 C C8 A1IG6 . . . K 3 -5.667 45.622 27.485 1 55.07 ? C8 A1IG6 409 B 1 
HETATM 20 N N9 A1IG6 . . . K 3 -5.472 45.399 26.191 1 51.93 ? N9 A1IG6 409 B 1 
HETATM 21 C C11 A1IG6 . . . K 3 -6.214 43.855 24.378 1 50.05 ? C11 A1IG6 409 B 1 
HETATM 22 N N15 A1IG6 . . . K 3 -7.52 42.532 25.692 1 55.53 ? N15 A1IG6 409 B 1 
HETATM 23 N N16 A1IG6 . . . K 3 -6.908 43.506 26.44 1 56.02 ? N16 A1IG6 409 B 1 
HETATM 24 C C17 A1IG6 . . . K 3 -7.117 43.717 27.778 1 55.79 ? C17 A1IG6 409 B 1 
HETATM 25 N N18 A1IG6 . . . K 3 -7.892 42.891 28.461 1 59.13 ? N18 A1IG6 409 B 1 
HETATM 26 F F24 A1IG6 . . . K 3 -4.132 48.562 29.774 1 65.07 ? F24 A1IG6 409 B 1 
HETATM 27 N N27 A1IG6 . . . K 3 -1.223 50.457 26.537 1 62.58 ? N27 A1IG6 409 B 1 
HETATM 28 C C28 A1IG6 . . . K 3 -1.393 51.292 25.345 1 67.04 ? C28 A1IG6 409 B 1 
HETATM 29 C C29 A1IG6 . . . K 3 -0.084 51.393 24.58 1 74.56 ? C29 A1IG6 409 B 1 
HETATM 30 N N30 A1IG6 . . . K 3 -0.302 52.14 23.259 1 86.93 1 N30 A1IG6 409 B 1 
HETATM 31 C C31 A1IG6 . . . K 3 0.813 52.78 22.499 1 92.92 ? C31 A1IG6 409 B 1 
HETATM 32 C C32 A1IG6 . . . K 3 1.03 51.912 25.476 1 70.6 ? C32 A1IG6 409 B 1 
HETATM 33 C C33 A1IG6 . . . K 3 1.212 50.988 26.683 1 68.41 ? C33 A1IG6 409 B 1 
HETATM 34 C C34 A1IG6 . . . K 3 -0.104 50.805 27.429 1 67.47 ? C34 A1IG6 409 B 1 
HETATM 35 C C35 A1IG6 . . . K 3 -4.247 48.668 23.568 1 63.07 ? C35 A1IG6 409 B 1 
HETATM 36 C C36 A1IG6 . . . K 3 -5.06 48.102 22.4 1 65.63 ? C36 A1IG6 409 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#