data_9FZP # _model_server_result.job_id VnLYIYxWmqxoI7Di1WOmPg _model_server_result.datetime_utc '2024-10-10 14:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9fzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 9FZP # _exptl.entry_id 9FZP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CEFOTAXIME,C3' cleaved,open,bound form" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9FZP _cell.length_a 67.303 _cell.length_b 88.467 _cell.length_c 82.008 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9FZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 245 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 245 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id CEF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CEF _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code A _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.397 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H15 N5 O5 S2' _chem_comp.formula_weight 397.429 _chem_comp.id CEF _chem_comp.mon_nstd_flag . _chem_comp.name "CEFOTAXIME, C3' cleaved, open, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 CEF sing 70 n n S1 C6 CEF sing 71 n n C1 C2 CEF sing 72 n n C1 H1 CEF sing 73 n n C1 H2 CEF sing 74 n n C2 C3 CEF doub 75 n n C2 C4 CEF sing 76 n n C3 H3 CEF sing 77 n n C3 H4 CEF sing 78 n n C4 C5 CEF sing 79 n n C4 N1 CEF doub 80 n n C5 O1 CEF doub 81 n n C5 O2 CEF sing 82 n n O2 H5 CEF sing 83 n n N1 C6 CEF sing 84 n n C6 C7 CEF sing 85 n n C6 H6 CEF sing 86 n n C7 C8 CEF sing 87 n n C7 N2 CEF sing 88 n n C7 H7 CEF sing 89 n n C8 O3 CEF doub 90 n n C8 H8 CEF sing 91 n n N2 C9 CEF sing 92 n n N2 H9 CEF sing 93 n n C9 O4 CEF doub 94 n n C9 C10 CEF sing 95 n n C10 N3 CEF doub 96 z n C10 C12 CEF sing 97 n n N3 O5 CEF sing 98 n n O5 C11 CEF sing 99 n n C11 H10 CEF sing 100 n n C11 H11 CEF sing 101 n n C11 H12 CEF sing 102 n n C12 C13 CEF doub 103 n y C12 N5 CEF sing 104 n y C13 S2 CEF sing 105 n y C13 H13 CEF sing 106 n n S2 C14 CEF sing 107 n y C14 N4 CEF sing 108 n n C14 N5 CEF doub 109 n y N4 H14 CEF sing 110 n n N4 H15 CEF sing 111 n n # _atom_sites.entry_id 9FZP _atom_sites.fract_transf_matrix[1][1] 0.014858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CEF A 1 601 245 CEF CFE . C 3 HOH A 1 701 23 HOH HOH . C 3 HOH A 2 702 20 HOH HOH . C 3 HOH A 3 703 18 HOH HOH . C 3 HOH A 4 704 13 HOH HOH . C 3 HOH A 5 705 30 HOH HOH . C 3 HOH A 6 706 17 HOH HOH . C 3 HOH A 7 707 2 HOH HOH . C 3 HOH A 8 708 25 HOH HOH . C 3 HOH A 9 709 8 HOH HOH . C 3 HOH A 10 710 28 HOH HOH . C 3 HOH A 11 711 5 HOH HOH . C 3 HOH A 12 712 7 HOH HOH . C 3 HOH A 13 713 3 HOH HOH . C 3 HOH A 14 714 31 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 27 HOH HOH . C 3 HOH A 17 717 6 HOH HOH . C 3 HOH A 18 718 16 HOH HOH . C 3 HOH A 19 719 12 HOH HOH . C 3 HOH A 20 720 22 HOH HOH . C 3 HOH A 21 721 10 HOH HOH . C 3 HOH A 22 722 29 HOH HOH . C 3 HOH A 23 723 33 HOH HOH . C 3 HOH A 24 724 11 HOH HOH . C 3 HOH A 25 725 1 HOH HOH . C 3 HOH A 26 726 9 HOH HOH . C 3 HOH A 27 727 21 HOH HOH . C 3 HOH A 28 728 19 HOH HOH . C 3 HOH A 29 729 4 HOH HOH . C 3 HOH A 30 730 32 HOH HOH . C 3 HOH A 31 731 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CEF . . . B 2 -13.267 39.833 -19.918 1 63.55 ? S1 CEF 601 A 1 HETATM 2 C C1 CEF . . . B 2 -15.089 39.823 -20.138 1 63.75 ? C1 CEF 601 A 1 HETATM 3 C C2 CEF . . . B 2 -15.955 40.077 -18.96 1 61.57 ? C2 CEF 601 A 1 HETATM 4 C C3 CEF . . . B 2 -17.191 40.611 -19.004 1 61.77 ? C3 CEF 601 A 1 HETATM 5 C C4 CEF . . . B 2 -15.167 39.584 -17.787 1 58.44 ? C4 CEF 601 A 1 HETATM 6 C C5 CEF . . . B 2 -15.98 38.82 -16.696 1 56.33 ? C5 CEF 601 A 1 HETATM 7 O O1 CEF . . . B 2 -16.019 39.356 -15.595 1 56.68 ? O1 CEF 601 A 1 HETATM 8 O O2 CEF . . . B 2 -16.435 37.806 -17.187 1 57.4 ? O2 CEF 601 A 1 HETATM 9 N N1 CEF . . . B 2 -14.002 39.956 -17.487 1 58.13 ? N1 CEF 601 A 1 HETATM 10 C C6 CEF . . . B 2 -12.94 40.498 -18.276 1 58.26 ? C6 CEF 601 A 1 HETATM 11 C C7 CEF . . . B 2 -11.615 39.928 -17.59 1 56.22 ? C7 CEF 601 A 1 HETATM 12 C C8 CEF . . . B 2 -11.929 39.673 -16.11 1 55.83 ? C8 CEF 601 A 1 HETATM 13 O O3 CEF . . . B 2 -11.868 38.532 -15.705 1 54.81 ? O3 CEF 601 A 1 HETATM 14 N N2 CEF . . . B 2 -11.049 38.708 -18.31 1 60.47 ? N2 CEF 601 A 1 HETATM 15 C C9 CEF . . . B 2 -9.874 38.662 -19.101 1 61.94 ? C9 CEF 601 A 1 HETATM 16 O O4 CEF . . . B 2 -9.222 39.677 -19.268 1 63.05 ? O4 CEF 601 A 1 HETATM 17 C C10 CEF . . . B 2 -9.247 37.421 -19.764 1 62.38 ? C10 CEF 601 A 1 HETATM 18 N N3 CEF . . . B 2 -9.788 37.02 -20.895 1 64.33 ? N3 CEF 601 A 1 HETATM 19 O O5 CEF . . . B 2 -10.825 37.715 -21.447 1 67.96 ? O5 CEF 601 A 1 HETATM 20 C C11 CEF . . . B 2 -11.865 36.885 -22.024 1 65.74 ? C11 CEF 601 A 1 HETATM 21 C C12 CEF . . . B 2 -8.087 36.771 -18.967 1 62.49 ? C12 CEF 601 A 1 HETATM 22 C C13 CEF . . . B 2 -7.577 37.234 -17.781 1 59.95 ? C13 CEF 601 A 1 HETATM 23 S S2 CEF . . . B 2 -6.26 36.152 -17.22 1 66.92 ? S2 CEF 601 A 1 HETATM 24 C C14 CEF . . . B 2 -6.466 35.046 -18.684 1 69.79 ? C14 CEF 601 A 1 HETATM 25 N N4 CEF . . . B 2 -5.688 33.889 -18.912 1 71.68 ? N4 CEF 601 A 1 HETATM 26 N N5 CEF . . . B 2 -7.454 35.544 -19.446 1 68.18 ? N5 CEF 601 A 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #