data_9G0D
#
_model_server_result.job_id            akbfu6HyQvefmY-ou_a-Qw 
_model_server_result.datetime_utc      '2025-07-21 08:26:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9g0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    9G0D 
#
_exptl.entry_id    9G0D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.54 
_cell.angle_gamma         90 
_cell.entry_id            9G0D 
_cell.length_a            53.77 
_cell.length_b            49.65 
_cell.length_c            79.33 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9G0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 25 C THR 23 1_555 D MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc2 B OG1 THR 43 C THR 41 1_555 D MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc3 C O3G GNP . C GNP 201 1_555 D MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc4 C O1B GNP . C GNP 201 1_555 D MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc5 D MG MG . C MG 202 1_555 F O HOH . C HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc6 D MG MG . C MG 202 1_555 F O HOH . C HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     9G0D 
_atom_sites.fract_transf_matrix[1][1]    0.018598 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002792 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020141 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GNP C 1 201 201 GNP GNP . 
D 4 MG C 1 202 1 MG MG . 
E 5 HOH B 1 1101 24 HOH HOH . 
E 5 HOH B 2 1102 3 HOH HOH . 
E 5 HOH B 3 1103 5 HOH HOH . 
E 5 HOH B 4 1104 26 HOH HOH . 
E 5 HOH B 5 1105 10 HOH HOH . 
E 5 HOH B 6 1106 21 HOH HOH . 
E 5 HOH B 7 1107 12 HOH HOH . 
E 5 HOH B 8 1108 13 HOH HOH . 
E 5 HOH B 9 1109 23 HOH HOH . 
E 5 HOH B 10 1110 11 HOH HOH . 
E 5 HOH B 11 1111 2 HOH HOH . 
E 5 HOH B 12 1112 25 HOH HOH . 
E 5 HOH B 13 1113 17 HOH HOH . 
E 5 HOH B 14 1114 8 HOH HOH . 
E 5 HOH B 15 1115 18 HOH HOH . 
E 5 HOH B 16 1116 30 HOH HOH . 
E 5 HOH B 17 1117 34 HOH HOH . 
E 5 HOH B 18 1118 20 HOH HOH . 
F 5 HOH C 1 301 15 HOH HOH . 
F 5 HOH C 2 302 14 HOH HOH . 
F 5 HOH C 3 303 1 HOH HOH . 
F 5 HOH C 4 304 27 HOH HOH . 
F 5 HOH C 5 305 19 HOH HOH . 
F 5 HOH C 6 306 36 HOH HOH . 
F 5 HOH C 7 307 28 HOH HOH . 
F 5 HOH C 8 308 35 HOH HOH . 
F 5 HOH C 9 309 6 HOH HOH . 
F 5 HOH C 10 310 9 HOH HOH . 
F 5 HOH C 11 311 16 HOH HOH . 
F 5 HOH C 12 312 29 HOH HOH . 
F 5 HOH C 13 313 4 HOH HOH . 
F 5 HOH C 14 314 7 HOH HOH . 
F 5 HOH C 15 315 32 HOH HOH . 
F 5 HOH C 16 316 33 HOH HOH . 
F 5 HOH C 17 317 31 HOH HOH . 
F 5 HOH C 18 318 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 23.835 0.457 25.198 1 44.19 ? PG GNP 201 C 1 
HETATM 2 O O1G GNP . . . C 3 25.153 0.462 25.931 1 52.27 ? O1G GNP 201 C 1 
HETATM 3 O O2G GNP . . . C 3 23.077 1.706 25.614 1 37.22 ? O2G GNP 201 C 1 
HETATM 4 O O3G GNP . . . C 3 24.142 0.526 23.681 1 61.48 ? O3G GNP 201 C 1 
HETATM 5 N N3B GNP . . . C 3 23.016 -0.977 25.621 1 35.06 ? N3B GNP 201 C 1 
HETATM 6 P PB GNP . . . C 3 21.58 -1.315 24.876 1 43.16 ? PB GNP 201 C 1 
HETATM 7 O O1B GNP . . . C 3 21.649 -0.821 23.454 1 38.57 ? O1B GNP 201 C 1 
HETATM 8 O O2B GNP . . . C 3 20.473 -0.617 25.593 1 37.28 ? O2B GNP 201 C 1 
HETATM 9 O O3A GNP . . . C 3 21.372 -2.934 24.979 1 57.58 ? O3A GNP 201 C 1 
HETATM 10 P PA GNP . . . C 3 21.668 -3.944 23.796 1 47.6 ? PA GNP 201 C 1 
HETATM 11 O O1A GNP . . . C 3 23.098 -3.713 23.323 1 44.47 ? O1A GNP 201 C 1 
HETATM 12 O O2A GNP . . . C 3 20.599 -3.806 22.78 1 37.1 ? O2A GNP 201 C 1 
HETATM 13 O O5' GNP . . . C 3 21.535 -5.35 24.493 1 46.41 ? O5' GNP 201 C 1 
HETATM 14 C C5' GNP . . . C 3 22.129 -5.613 25.784 1 59.58 ? C5' GNP 201 C 1 
HETATM 15 C C4' GNP . . . C 3 22.212 -7.109 26.006 1 60.92 ? C4' GNP 201 C 1 
HETATM 16 O O4' GNP . . . C 3 20.908 -7.629 26.365 1 57.33 ? O4' GNP 201 C 1 
HETATM 17 C C3' GNP . . . C 3 22.686 -7.924 24.801 1 63.69 ? C3' GNP 201 C 1 
HETATM 18 O O3' GNP . . . C 3 23.59 -8.957 25.169 1 67.46 ? O3' GNP 201 C 1 
HETATM 19 C C2' GNP . . . C 3 21.385 -8.49 24.221 1 63.46 ? C2' GNP 201 C 1 
HETATM 20 O O2' GNP . . . C 3 21.587 -9.747 23.588 1 84.33 ? O2' GNP 201 C 1 
HETATM 21 C C1' GNP . . . C 3 20.518 -8.651 25.469 1 56.61 ? C1' GNP 201 C 1 
HETATM 22 N N9 GNP . . . C 3 19.078 -8.498 25.181 1 53.59 ? N9 GNP 201 C 1 
HETATM 23 C C8 GNP . . . C 3 18.483 -7.456 24.507 1 55.57 ? C8 GNP 201 C 1 
HETATM 24 N N7 GNP . . . C 3 17.181 -7.587 24.382 1 55.54 ? N7 GNP 201 C 1 
HETATM 25 C C5 GNP . . . C 3 16.898 -8.793 24.999 1 57.15 ? C5 GNP 201 C 1 
HETATM 26 C C6 GNP . . . C 3 15.652 -9.496 25.192 1 56.87 ? C6 GNP 201 C 1 
HETATM 27 O O6 GNP . . . C 3 14.532 -9.143 24.83 1 56.22 ? O6 GNP 201 C 1 
HETATM 28 N N1 GNP . . . C 3 15.83 -10.683 25.877 1 56.44 ? N1 GNP 201 C 1 
HETATM 29 C C2 GNP . . . C 3 17.032 -11.166 26.327 1 52.53 ? C2 GNP 201 C 1 
HETATM 30 N N2 GNP . . . C 3 17.01 -12.337 26.965 1 49.65 ? N2 GNP 201 C 1 
HETATM 31 N N3 GNP . . . C 3 18.192 -10.535 26.149 1 52.23 ? N3 GNP 201 C 1 
HETATM 32 C C4 GNP . . . C 3 18.061 -9.368 25.498 1 53.77 ? C4 GNP 201 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#