data_9G0K # _model_server_result.job_id OM8pVUQ3YiOCH7Bbim2bHg _model_server_result.datetime_utc '2024-10-11 02:22:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 9G0K # _exptl.entry_id 9G0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G0K _cell.length_a 99.61 _cell.length_b 103.12 _cell.length_c 49.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 286 n n N HN1 SAH sing 287 n n N HN2 SAH sing 288 n n CA CB SAH sing 289 n n CA C SAH sing 290 n n CA HA SAH sing 291 n n CB CG SAH sing 292 n n CB HB1 SAH sing 293 n n CB HB2 SAH sing 294 n n CG SD SAH sing 295 n n CG HG1 SAH sing 296 n n CG HG2 SAH sing 297 n n SD C5' SAH sing 298 n n C O SAH doub 299 n n C OXT SAH sing 300 n n OXT HXT SAH sing 301 n n C5' C4' SAH sing 302 n n C5' "H5'1" SAH sing 303 n n C5' "H5'2" SAH sing 304 n n C4' O4' SAH sing 305 n n C4' C3' SAH sing 306 n n C4' H4' SAH sing 307 n n O4' C1' SAH sing 308 n n C3' O3' SAH sing 309 n n C3' C2' SAH sing 310 n n C3' H3' SAH sing 311 n n O3' HO3' SAH sing 312 n n C2' O2' SAH sing 313 n n C2' C1' SAH sing 314 n n C2' H2' SAH sing 315 n n O2' HO2' SAH sing 316 n n C1' N9 SAH sing 317 n n C1' H1' SAH sing 318 n n N9 C8 SAH sing 319 n y N9 C4 SAH sing 320 n y C8 N7 SAH doub 321 n y C8 H8 SAH sing 322 n n N7 C5 SAH sing 323 n y C5 C6 SAH sing 324 n y C5 C4 SAH doub 325 n y C6 N6 SAH sing 326 n n C6 N1 SAH doub 327 n y N6 HN61 SAH sing 328 n n N6 HN62 SAH sing 329 n n N1 C2 SAH sing 330 n y C2 N3 SAH doub 331 n y C2 H2 SAH sing 332 n n N3 C4 SAH sing 333 n y # _atom_sites.entry_id 9G0K _atom_sites.fract_transf_matrix[1][1] 0.010039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 901 901 SAH SAH . D 3 EDO A 1 902 2 EDO EDO . E 2 SAH B 1 901 901 SAH SAH . F 3 EDO B 1 902 1 EDO EDO . G 4 HOH A 1 1001 22 HOH HOH . G 4 HOH A 2 1002 21 HOH HOH . G 4 HOH A 3 1003 6 HOH HOH . G 4 HOH A 4 1004 7 HOH HOH . G 4 HOH A 5 1005 5 HOH HOH . G 4 HOH A 6 1006 19 HOH HOH . G 4 HOH A 7 1007 15 HOH HOH . G 4 HOH A 8 1008 18 HOH HOH . G 4 HOH A 9 1009 8 HOH HOH . H 4 HOH B 1 1001 16 HOH HOH . H 4 HOH B 2 1002 14 HOH HOH . H 4 HOH B 3 1003 11 HOH HOH . H 4 HOH B 4 1004 4 HOH HOH . H 4 HOH B 5 1005 13 HOH HOH . H 4 HOH B 6 1006 20 HOH HOH . H 4 HOH B 7 1007 10 HOH HOH . H 4 HOH B 8 1008 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 -23.785 1.286 9.427 1 34.82 ? N SAH 901 B 1 HETATM 2 C CA SAH . . . E 2 -23.2 0.064 8.887 1 41.13 ? CA SAH 901 B 1 HETATM 3 C CB SAH . . . E 2 -24.152 -0.645 7.913 1 44.43 ? CB SAH 901 B 1 HETATM 4 C CG SAH . . . E 2 -24.615 0.185 6.745 1 42.1 ? CG SAH 901 B 1 HETATM 5 S SD SAH . . . E 2 -25.763 -0.828 5.821 1 38.36 ? SD SAH 901 B 1 HETATM 6 C C SAH . . . E 2 -21.914 0.419 8.157 1 38.93 ? C SAH 901 B 1 HETATM 7 O O SAH . . . E 2 -21.264 1.467 8.392 1 46.19 ? O SAH 901 B 1 HETATM 8 O OXT SAH . . . E 2 -21.553 -0.407 7.318 1 47.97 ? OXT SAH 901 B 1 HETATM 9 C C5' SAH . . . E 2 -27.48 -0.245 6.024 1 37.64 ? C5' SAH 901 B 1 HETATM 10 C C4' SAH . . . E 2 -27.999 -0.652 7.39 1 35.58 ? C4' SAH 901 B 1 HETATM 11 O O4' SAH . . . E 2 -29.101 0.205 7.769 1 35.68 ? O4' SAH 901 B 1 HETATM 12 C C3' SAH . . . E 2 -28.487 -2.115 7.562 1 33.46 ? C3' SAH 901 B 1 HETATM 13 O O3' SAH . . . E 2 -27.913 -2.586 8.777 1 41.23 ? O3' SAH 901 B 1 HETATM 14 C C2' SAH . . . E 2 -30.008 -1.96 7.631 1 29.79 ? C2' SAH 901 B 1 HETATM 15 O O2' SAH . . . E 2 -30.696 -2.88 8.427 1 28.44 ? O2' SAH 901 B 1 HETATM 16 C C1' SAH . . . E 2 -30.111 -0.599 8.329 1 33.99 ? C1' SAH 901 B 1 HETATM 17 N N9 SAH . . . E 2 -31.393 0.053 8.141 1 30.29 ? N9 SAH 901 B 1 HETATM 18 C C8 SAH . . . E 2 -32.027 0.27 6.94 1 30.87 ? C8 SAH 901 B 1 HETATM 19 N N7 SAH . . . E 2 -33.216 0.801 7.074 1 29.19 ? N7 SAH 901 B 1 HETATM 20 C C5 SAH . . . E 2 -33.372 0.914 8.445 1 25.08 ? C5 SAH 901 B 1 HETATM 21 C C6 SAH . . . E 2 -34.431 1.398 9.214 1 24.58 ? C6 SAH 901 B 1 HETATM 22 N N6 SAH . . . E 2 -35.566 1.814 8.663 1 31.82 ? N6 SAH 901 B 1 HETATM 23 N N1 SAH . . . E 2 -34.29 1.377 10.565 1 28.94 ? N1 SAH 901 B 1 HETATM 24 C C2 SAH . . . E 2 -33.16 0.875 11.098 1 29.86 ? C2 SAH 901 B 1 HETATM 25 N N3 SAH . . . E 2 -32.08 0.428 10.472 1 37.14 ? N3 SAH 901 B 1 HETATM 26 C C4 SAH . . . E 2 -32.261 0.457 9.125 1 34.34 ? C4 SAH 901 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #