data_9G0V # _model_server_result.job_id ls7dxS_D_SQE3l5OuL25VA _model_server_result.datetime_utc '2025-06-25 08:30:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 9G0V # _exptl.entry_id 9G0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.331 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]azanium' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G0V _cell.length_a 170.641 _cell.length_b 170.641 _cell.length_c 170.641 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2,3 A,B,C,D,E,F 2 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 16_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 85.3205 85.3205 5 'crystal symmetry operation' 18_555 z,-x+1/2,-y+1/2 0 0 1 -1 0 0 0 -1 0 0 85.3205 85.3205 6 'crystal symmetry operation' 23_555 y,-z+1/2,-x+1/2 0 1 0 0 0 -1 -1 0 0 0 85.3205 85.3205 7 'crystal symmetry operation' 27_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 85.3205 0 85.3205 8 'crystal symmetry operation' 32_555 -z+1/2,x,-y+1/2 0 0 -1 1 0 0 0 -1 0 85.3205 0 85.3205 9 'crystal symmetry operation' 34_555 -y+1/2,z,-x+1/2 0 -1 0 0 0 1 -1 0 0 85.3205 0 85.3205 10 'crystal symmetry operation' 38_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 85.3205 85.3205 0 11 'crystal symmetry operation' 43_555 -z+1/2,-x+1/2,y 0 0 -1 -1 0 0 0 1 0 85.3205 85.3205 0 12 'crystal symmetry operation' 48_555 -y+1/2,-z+1/2,x 0 -1 0 0 0 -1 1 0 0 85.3205 85.3205 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H18 N3 O6 S 1' _chem_comp.formula_weight 308.331 _chem_comp.id VDW _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]azanium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SG2 CB2 VDW sing 561 n n CB2 CA2 VDW sing 562 n n CA2 N2 VDW sing 563 n n CA2 C2 VDW sing 564 n n N2 CD1 VDW sing 565 n n O11 C1 VDW doub 566 n n CG1 CD1 VDW sing 567 n n CG1 CB1 VDW sing 568 n n O12 C1 VDW sing 569 n n CD1 OE1 VDW doub 570 n n C1 CA1 VDW sing 571 n n N1 CA1 VDW sing 572 n n C2 N3 VDW sing 573 n n C2 O2 VDW doub 574 n n N3 CA3 VDW sing 575 n n CA1 CB1 VDW sing 576 n n CA3 C3 VDW sing 577 n n C3 O31 VDW doub 578 n n C3 O32 VDW sing 579 n n N1 HN13 VDW sing 580 n n N1 HN11 VDW sing 581 n n N1 HN12 VDW sing 582 n n CA1 HA1 VDW sing 583 n n O12 H1 VDW sing 584 n n CB1 HB13 VDW sing 585 n n CB1 HB12 VDW sing 586 n n CG1 HG13 VDW sing 587 n n CG1 HG12 VDW sing 588 n n N2 HN2 VDW sing 589 n n CA2 HA2 VDW sing 590 n n CB2 HB23 VDW sing 591 n n CB2 HB22 VDW sing 592 n n SG2 HSG VDW sing 593 n n N3 HN3 VDW sing 594 n n CA3 HA31 VDW sing 595 n n CA3 HA32 VDW sing 596 n n O32 H2 VDW sing 597 n n # _atom_sites.entry_id 9G0V _atom_sites.fract_transf_matrix[1][1] 0.00586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 909 PLM PLM . C 3 LMT A 1 202 1001 LMT LMT . D 2 PLM A 1 203 1154 PLM PLM . E 4 VDW A 1 204 1201 VDW GTT . F 5 A1IHO A 1 205 1301 A1IHO LI1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VDW . . . E 4 7.285 16.566 19.397 1 202.71 ? N1 VDW 204 A 1 HETATM 2 C CA1 VDW . . . E 4 6.122 16.762 20.306 1 202.7 ? CA1 VDW 204 A 1 HETATM 3 C C1 VDW . . . E 4 5.159 17.781 19.69 1 202.94 ? C1 VDW 204 A 1 HETATM 4 O O11 VDW . . . E 4 5.645 18.634 18.925 1 203.02 ? O11 VDW 204 A 1 HETATM 5 O O12 VDW . . . E 4 3.945 17.677 19.998 1 203.07 ? O12 VDW 204 A 1 HETATM 6 C CB1 VDW . . . E 4 6.593 17.229 21.685 1 202.46 ? CB1 VDW 204 A 1 HETATM 7 C CG1 VDW . . . E 4 5.55 17.082 22.804 1 202.29 ? CG1 VDW 204 A 1 HETATM 8 C CD1 VDW . . . E 4 4.992 15.683 22.92 1 202.16 ? CD1 VDW 204 A 1 HETATM 9 O OE1 VDW . . . E 4 3.806 15.488 23.173 1 202.21 ? OE1 VDW 204 A 1 HETATM 10 N N2 VDW . . . E 4 5.884 14.694 22.784 1 201.93 ? N2 VDW 204 A 1 HETATM 11 C CA2 VDW . . . E 4 5.557 13.285 22.633 1 201.64 ? CA2 VDW 204 A 1 HETATM 12 C C2 VDW . . . E 4 4.66 12.998 21.431 1 201.16 ? C2 VDW 204 A 1 HETATM 13 O O2 VDW . . . E 4 3.436 12.988 21.543 1 201 ? O2 VDW 204 A 1 HETATM 14 C CB2 VDW . . . E 4 4.944 12.705 23.898 1 201.73 ? CB2 VDW 204 A 1 HETATM 15 S SG2 VDW . . . E 4 5.254 10.935 24.099 1 201.84 ? SG2 VDW 204 A 1 HETATM 16 N N3 VDW . . . E 4 5.293 12.764 20.282 1 200.77 ? N3 VDW 204 A 1 HETATM 17 C CA3 VDW . . . E 4 4.589 12.341 19.095 1 200.3 ? CA3 VDW 204 A 1 HETATM 18 C C3 VDW . . . E 4 4.83 10.871 18.803 1 199.84 ? C3 VDW 204 A 1 HETATM 19 O O31 VDW . . . E 4 4.627 10.463 17.646 1 199.81 ? O31 VDW 204 A 1 HETATM 20 O O32 VDW . . . E 4 5.222 10.162 19.76 1 199.55 ? O32 VDW 204 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #