data_9G0V # _model_server_result.job_id iF1PrjXKYCvTEyvw0rxgaA _model_server_result.datetime_utc '2025-06-25 11:42:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 9G0V # _exptl.entry_id 9G0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[3,4-bis(fluoranyl)phenyl]-9-[6-[2,2,2-tris(fluoranyl)ethoxy]pyrimidin-4-yl]-1,9-diazaspiro[5.5]undecan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G0V _cell.length_a 170.641 _cell.length_b 170.641 _cell.length_c 170.641 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2,3 A,B,C,D,E,F 2 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 16_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 85.3205 85.3205 5 'crystal symmetry operation' 18_555 z,-x+1/2,-y+1/2 0 0 1 -1 0 0 0 -1 0 0 85.3205 85.3205 6 'crystal symmetry operation' 23_555 y,-z+1/2,-x+1/2 0 1 0 0 0 -1 -1 0 0 0 85.3205 85.3205 7 'crystal symmetry operation' 27_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 85.3205 0 85.3205 8 'crystal symmetry operation' 32_555 -z+1/2,x,-y+1/2 0 0 -1 1 0 0 0 -1 0 85.3205 0 85.3205 9 'crystal symmetry operation' 34_555 -y+1/2,z,-x+1/2 0 -1 0 0 0 1 -1 0 0 85.3205 0 85.3205 10 'crystal symmetry operation' 38_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 85.3205 85.3205 0 11 'crystal symmetry operation' 43_555 -z+1/2,-x+1/2,y 0 0 -1 -1 0 0 0 1 0 85.3205 85.3205 0 12 'crystal symmetry operation' 48_555 -y+1/2,-z+1/2,x 0 -1 0 0 0 -1 1 0 0 85.3205 85.3205 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H21 F5 N4 O2' _chem_comp.formula_weight 456.409 _chem_comp.id A1IHO _chem_comp.mon_nstd_flag . _chem_comp.name 1-[3,4-bis(fluoranyl)phenyl]-9-[6-[2,2,2-tris(fluoranyl)ethoxy]pyrimidin-4-yl]-1,9-diazaspiro[5.5]undecan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F31 C29 A1IHO sing 1 n n C28 C29 A1IHO sing 2 n n C28 O27 A1IHO sing 3 n n C1 C6 A1IHO sing 4 n n C1 N2 A1IHO sing 5 n n C6 C5 A1IHO sing 6 n n C29 F30 A1IHO sing 7 n n C29 F32 A1IHO sing 8 n n O27 C23 A1IHO sing 9 n n C22 C23 A1IHO doub 10 n y C22 C21 A1IHO sing 11 n y C15 C14 A1IHO doub 12 n y C15 C16 A1IHO sing 13 n y C14 C13 A1IHO sing 14 n y C11 C5 A1IHO sing 15 n n C11 C10 A1IHO sing 16 n n N2 C21 A1IHO sing 17 n n N2 C3 A1IHO sing 18 n n C23 N24 A1IHO sing 19 n y C5 N7 A1IHO sing 20 n n C5 C4 A1IHO sing 21 n n C21 N26 A1IHO doub 22 n y F20 C16 A1IHO sing 23 n n C3 C4 A1IHO sing 24 n n C16 C17 A1IHO doub 25 n y C13 N7 A1IHO sing 26 n n C13 C18 A1IHO doub 27 n y N7 C8 A1IHO sing 28 n n C10 C9 A1IHO sing 29 n n N24 C25 A1IHO doub 30 n y C8 C9 A1IHO sing 31 n n C8 O12 A1IHO doub 32 n n N26 C25 A1IHO sing 33 n y C17 C18 A1IHO sing 34 n y C17 F19 A1IHO sing 35 n n C1 H1 A1IHO sing 36 n n C1 H2 A1IHO sing 37 n n C3 H3 A1IHO sing 38 n n C3 H4 A1IHO sing 39 n n C11 H5 A1IHO sing 40 n n C11 H6 A1IHO sing 41 n n C14 H7 A1IHO sing 42 n n C15 H8 A1IHO sing 43 n n C18 H9 A1IHO sing 44 n n C22 H10 A1IHO sing 45 n n C25 H11 A1IHO sing 46 n n C28 H12 A1IHO sing 47 n n C28 H13 A1IHO sing 48 n n C4 H14 A1IHO sing 49 n n C4 H15 A1IHO sing 50 n n C6 H16 A1IHO sing 51 n n C6 H17 A1IHO sing 52 n n C9 H18 A1IHO sing 53 n n C9 H19 A1IHO sing 54 n n C10 H20 A1IHO sing 55 n n C10 H21 A1IHO sing 56 n n # _atom_sites.entry_id 9G0V _atom_sites.fract_transf_matrix[1][1] 0.00586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 909 PLM PLM . C 3 LMT A 1 202 1001 LMT LMT . D 2 PLM A 1 203 1154 PLM PLM . E 4 VDW A 1 204 1201 VDW GTT . F 5 A1IHO A 1 205 1301 A1IHO LI1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IHO . . . F 5 4.451 21.983 25.295 1 146.72 ? C1 A1IHO 205 A 1 HETATM 2 C C3 A1IHO . . . F 5 2.912 20.906 26.934 1 146.57 ? C3 A1IHO 205 A 1 HETATM 3 C C11 A1IHO . . . F 5 5.034 18.247 26.053 1 146.14 ? C11 A1IHO 205 A 1 HETATM 4 C C13 A1IHO . . . F 5 7.278 21.098 27.266 1 146.49 ? C13 A1IHO 205 A 1 HETATM 5 C C14 A1IHO . . . F 5 8.046 21.53 26.177 1 146.63 ? C14 A1IHO 205 A 1 HETATM 6 C C15 A1IHO . . . F 5 8.854 22.674 26.219 1 146.49 ? C15 A1IHO 205 A 1 HETATM 7 C C16 A1IHO . . . F 5 8.868 23.424 27.38 1 146.48 ? C16 A1IHO 205 A 1 HETATM 8 C C17 A1IHO . . . F 5 8.119 23.011 28.482 1 147 ? C17 A1IHO 205 A 1 HETATM 9 C C18 A1IHO . . . F 5 7.329 21.849 28.446 1 146.71 ? C18 A1IHO 205 A 1 HETATM 10 C C21 A1IHO . . . F 5 2.821 23.317 26.549 1 147.72 ? C21 A1IHO 205 A 1 HETATM 11 C C22 A1IHO . . . F 5 3.153 24.485 25.857 1 148.25 ? C22 A1IHO 205 A 1 HETATM 12 C C23 A1IHO . . . F 5 2.584 25.695 26.253 1 148.68 ? C23 A1IHO 205 A 1 HETATM 13 C C25 A1IHO . . . F 5 1.436 24.598 27.97 1 148.26 ? C25 A1IHO 205 A 1 HETATM 14 C C28 A1IHO . . . F 5 3.251 27.977 26.388 1 149.71 ? C28 A1IHO 205 A 1 HETATM 15 C C29 A1IHO . . . F 5 4.228 28.865 25.597 1 150.24 ? C29 A1IHO 205 A 1 HETATM 16 N N2 A1IHO . . . F 5 3.361 22.11 26.246 1 146.94 ? N2 A1IHO 205 A 1 HETATM 17 C C4 A1IHO . . . F 5 4.068 20.05 27.517 1 146.45 ? C4 A1IHO 205 A 1 HETATM 18 C C5 A1IHO . . . F 5 5.232 19.728 26.525 1 146.43 ? C5 A1IHO 205 A 1 HETATM 19 C C6 A1IHO . . . F 5 4.996 20.532 25.2 1 146.62 ? C6 A1IHO 205 A 1 HETATM 20 N N7 A1IHO . . . F 5 6.571 19.865 27.181 1 146.33 ? N7 A1IHO 205 A 1 HETATM 21 C C8 A1IHO . . . F 5 7.233 18.769 27.672 1 146.15 ? C8 A1IHO 205 A 1 HETATM 22 C C9 A1IHO . . . F 5 6.692 17.353 27.656 1 146.23 ? C9 A1IHO 205 A 1 HETATM 23 C C10 A1IHO . . . F 5 5.238 17.21 27.174 1 146.03 ? C10 A1IHO 205 A 1 HETATM 24 O O12 A1IHO . . . F 5 8.334 18.87 28.199 1 145.74 ? O12 A1IHO 205 A 1 HETATM 25 F F19 A1IHO . . . F 5 8.181 23.745 29.584 1 147.61 ? F19 A1IHO 205 A 1 HETATM 26 F F20 A1IHO . . . F 5 9.585 24.531 27.447 1 146.26 ? F20 A1IHO 205 A 1 HETATM 27 N N24 A1IHO . . . F 5 1.734 25.724 27.298 1 148.49 ? N24 A1IHO 205 A 1 HETATM 28 N N26 A1IHO . . . F 5 1.992 23.426 27.607 1 148.02 ? N26 A1IHO 205 A 1 HETATM 29 O O27 A1IHO . . . F 5 2.898 26.863 25.56 1 149.21 ? O27 A1IHO 205 A 1 HETATM 30 F F30 A1IHO . . . F 5 5.502 28.474 25.871 1 150.58 ? F30 A1IHO 205 A 1 HETATM 31 F F31 A1IHO . . . F 5 4.005 28.72 24.258 1 150.34 ? F31 A1IHO 205 A 1 HETATM 32 F F32 A1IHO . . . F 5 4.051 30.164 25.98 1 150.19 ? F32 A1IHO 205 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #