data_9G16
#
_model_server_result.job_id            -EaNfb_SocxYMG_JZ3a9TQ 
_model_server_result.datetime_utc      '2025-06-18 10:28:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9g16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":515}' 
#
_entry.id    9G16 
#
_exptl.entry_id    9G16 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.25 
_cell.angle_gamma         90 
_cell.entry_id            9G16 
_cell.length_a            50.537 
_cell.length_b            40.311 
_cell.length_c            60.299 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9G16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    'P 2y' 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             200 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              200 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            P 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              515 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.448 
_struct_conn.pdbx_value_order               sing 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 391 n n 
C1 C6 RET sing 392 n n 
C1 C16 RET sing 393 n n 
C1 C17 RET sing 394 n n 
C2 C3 RET sing 395 n n 
C2 H21 RET sing 396 n n 
C2 H22 RET sing 397 n n 
C3 C4 RET sing 398 n n 
C3 H31 RET sing 399 n n 
C3 H32 RET sing 400 n n 
C4 C5 RET sing 401 n n 
C4 H41 RET sing 402 n n 
C4 H42 RET sing 403 n n 
C5 C6 RET doub 404 n n 
C5 C18 RET sing 405 n n 
C6 C7 RET sing 406 n n 
C7 C8 RET doub 407 e n 
C7 H7 RET sing 408 n n 
C8 C9 RET sing 409 n n 
C8 H8 RET sing 410 n n 
C9 C10 RET doub 411 e n 
C9 C19 RET sing 412 n n 
C10 C11 RET sing 413 n n 
C10 H10 RET sing 414 n n 
C11 C12 RET doub 415 e n 
C11 H11 RET sing 416 n n 
C12 C13 RET sing 417 n n 
C12 H12 RET sing 418 n n 
C13 C14 RET doub 419 e n 
C13 C20 RET sing 420 n n 
C14 C15 RET sing 421 n n 
C14 H14 RET sing 422 n n 
C15 O1 RET doub 423 n n 
C15 H15 RET sing 424 n n 
C16 H161 RET sing 425 n n 
C16 H162 RET sing 426 n n 
C16 H163 RET sing 427 n n 
C17 H171 RET sing 428 n n 
C17 H172 RET sing 429 n n 
C17 H173 RET sing 430 n n 
C18 H181 RET sing 431 n n 
C18 H182 RET sing 432 n n 
C18 H183 RET sing 433 n n 
C19 H191 RET sing 434 n n 
C19 H192 RET sing 435 n n 
C19 H193 RET sing 436 n n 
C20 H201 RET sing 437 n n 
C20 H202 RET sing 438 n n 
C20 H203 RET sing 439 n n 
#
_atom_sites.entry_id                     9G16 
_atom_sites.fract_transf_matrix[1][1]    0.019787 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003936 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016909 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OLA A 1 501 501 OLA OLA . 
C 2 OLA A 1 502 502 OLA OLA . 
D 2 OLA A 1 503 503 OLA OLA . 
E 3 LFA A 1 504 504 LFA LFA . 
F 3 LFA A 1 505 505 LFA LFA . 
G 3 LFA A 1 506 506 LFA LFA . 
H 3 LFA A 1 507 507 LFA LFA . 
I 3 LFA A 1 508 508 LFA LFA . 
J 3 LFA A 1 509 509 LFA LFA . 
K 3 LFA A 1 510 510 LFA LFA . 
L 3 LFA A 1 511 511 LFA LFA . 
M 3 LFA A 1 512 512 LFA LFA . 
N 3 LFA A 1 513 513 LFA LFA . 
O 3 LFA A 1 514 514 LFA LFA . 
P 4 RET A 1 515 200 RET LYR . 
Q 5 HOH A 1 601 684 HOH HOH . 
Q 5 HOH A 2 602 709 HOH HOH . 
Q 5 HOH A 3 603 671 HOH HOH . 
Q 5 HOH A 4 604 732 HOH HOH . 
Q 5 HOH A 5 605 607 HOH HOH . 
Q 5 HOH A 6 606 629 HOH HOH . 
Q 5 HOH A 7 607 706 HOH HOH . 
Q 5 HOH A 8 608 652 HOH HOH . 
Q 5 HOH A 9 609 675 HOH HOH . 
Q 5 HOH A 10 610 620 HOH HOH . 
Q 5 HOH A 11 611 713 HOH HOH . 
Q 5 HOH A 12 612 637 HOH HOH . 
Q 5 HOH A 13 613 679 HOH HOH . 
Q 5 HOH A 14 614 674 HOH HOH . 
Q 5 HOH A 15 615 724 HOH HOH . 
Q 5 HOH A 16 616 705 HOH HOH . 
Q 5 HOH A 17 617 659 HOH HOH . 
Q 5 HOH A 18 618 685 HOH HOH . 
Q 5 HOH A 19 619 680 HOH HOH . 
Q 5 HOH A 20 620 606 HOH HOH . 
Q 5 HOH A 21 621 601 HOH HOH . 
Q 5 HOH A 22 622 700 HOH HOH . 
Q 5 HOH A 23 623 664 HOH HOH . 
Q 5 HOH A 24 624 646 HOH HOH . 
Q 5 HOH A 25 625 633 HOH HOH . 
Q 5 HOH A 26 626 660 HOH HOH . 
Q 5 HOH A 27 627 656 HOH HOH . 
Q 5 HOH A 28 628 612 HOH HOH . 
Q 5 HOH A 29 629 630 HOH HOH . 
Q 5 HOH A 30 630 691 HOH HOH . 
Q 5 HOH A 31 631 623 HOH HOH . 
Q 5 HOH A 32 632 728 HOH HOH . 
Q 5 HOH A 33 633 645 HOH HOH . 
Q 5 HOH A 34 634 701 HOH HOH . 
Q 5 HOH A 35 635 682 HOH HOH . 
Q 5 HOH A 36 636 611 HOH HOH . 
Q 5 HOH A 37 637 693 HOH HOH . 
Q 5 HOH A 38 638 628 HOH HOH . 
Q 5 HOH A 39 639 602 HOH HOH . 
Q 5 HOH A 40 640 635 HOH HOH . 
Q 5 HOH A 41 641 653 HOH HOH . 
Q 5 HOH A 42 642 662 HOH HOH . 
Q 5 HOH A 43 643 632 HOH HOH . 
Q 5 HOH A 44 644 609 HOH HOH . 
Q 5 HOH A 45 645 644 HOH HOH . 
Q 5 HOH A 46 646 643 HOH HOH . 
Q 5 HOH A 47 647 695 HOH HOH . 
Q 5 HOH A 48 648 619 HOH HOH . 
Q 5 HOH A 49 649 640 HOH HOH . 
Q 5 HOH A 50 650 669 HOH HOH . 
Q 5 HOH A 51 651 642 HOH HOH . 
Q 5 HOH A 52 652 651 HOH HOH . 
Q 5 HOH A 53 653 613 HOH HOH . 
Q 5 HOH A 54 654 603 HOH HOH . 
Q 5 HOH A 55 655 614 HOH HOH . 
Q 5 HOH A 56 656 708 HOH HOH . 
Q 5 HOH A 57 657 605 HOH HOH . 
Q 5 HOH A 58 658 608 HOH HOH . 
Q 5 HOH A 59 659 665 HOH HOH . 
Q 5 HOH A 60 660 624 HOH HOH . 
Q 5 HOH A 61 661 744 HOH HOH . 
Q 5 HOH A 62 662 742 HOH HOH . 
Q 5 HOH A 63 663 654 HOH HOH . 
Q 5 HOH A 64 664 725 HOH HOH . 
Q 5 HOH A 65 665 639 HOH HOH . 
Q 5 HOH A 66 666 604 HOH HOH . 
Q 5 HOH A 67 667 658 HOH HOH . 
Q 5 HOH A 68 668 726 HOH HOH . 
Q 5 HOH A 69 669 670 HOH HOH . 
Q 5 HOH A 70 670 649 HOH HOH . 
Q 5 HOH A 71 671 703 HOH HOH . 
Q 5 HOH A 72 672 716 HOH HOH . 
Q 5 HOH A 73 673 673 HOH HOH . 
Q 5 HOH A 74 674 722 HOH HOH . 
Q 5 HOH A 75 675 688 HOH HOH . 
Q 5 HOH A 76 676 737 HOH HOH . 
Q 5 HOH A 77 677 648 HOH HOH . 
Q 5 HOH A 78 678 638 HOH HOH . 
Q 5 HOH A 79 679 641 HOH HOH . 
Q 5 HOH A 80 680 655 HOH HOH . 
Q 5 HOH A 81 681 631 HOH HOH . 
Q 5 HOH A 82 682 667 HOH HOH . 
Q 5 HOH A 83 683 677 HOH HOH . 
Q 5 HOH A 84 684 621 HOH HOH . 
Q 5 HOH A 85 685 636 HOH HOH . 
Q 5 HOH A 86 686 686 HOH HOH . 
Q 5 HOH A 87 687 617 HOH HOH . 
Q 5 HOH A 88 688 668 HOH HOH . 
Q 5 HOH A 89 689 712 HOH HOH . 
Q 5 HOH A 90 690 618 HOH HOH . 
Q 5 HOH A 91 691 634 HOH HOH . 
Q 5 HOH A 92 692 610 HOH HOH . 
Q 5 HOH A 93 693 698 HOH HOH . 
Q 5 HOH A 94 694 710 HOH HOH . 
Q 5 HOH A 95 695 711 HOH HOH . 
Q 5 HOH A 96 696 687 HOH HOH . 
Q 5 HOH A 97 697 626 HOH HOH . 
Q 5 HOH A 98 698 666 HOH HOH . 
Q 5 HOH A 99 699 717 HOH HOH . 
Q 5 HOH A 100 700 622 HOH HOH . 
Q 5 HOH A 101 701 739 HOH HOH . 
Q 5 HOH A 102 702 733 HOH HOH . 
Q 5 HOH A 103 703 723 HOH HOH . 
Q 5 HOH A 104 704 727 HOH HOH . 
Q 5 HOH A 105 705 741 HOH HOH . 
Q 5 HOH A 106 706 699 HOH HOH . 
Q 5 HOH A 107 707 702 HOH HOH . 
Q 5 HOH A 108 708 704 HOH HOH . 
Q 5 HOH A 109 709 731 HOH HOH . 
Q 5 HOH A 110 710 678 HOH HOH . 
Q 5 HOH A 111 711 718 HOH HOH . 
Q 5 HOH A 112 712 689 HOH HOH . 
Q 5 HOH A 113 713 696 HOH HOH . 
Q 5 HOH A 114 714 661 HOH HOH . 
Q 5 HOH A 115 715 746 HOH HOH . 
Q 5 HOH A 116 716 720 HOH HOH . 
Q 5 HOH A 117 717 736 HOH HOH . 
Q 5 HOH A 118 718 740 HOH HOH . 
Q 5 HOH A 119 719 690 HOH HOH . 
Q 5 HOH A 120 720 735 HOH HOH . 
Q 5 HOH A 121 721 747 HOH HOH . 
Q 5 HOH A 122 722 672 HOH HOH . 
Q 5 HOH A 123 723 681 HOH HOH . 
Q 5 HOH A 124 724 707 HOH HOH . 
Q 5 HOH A 125 725 715 HOH HOH . 
Q 5 HOH A 126 726 738 HOH HOH . 
Q 5 HOH A 127 727 743 HOH HOH . 
Q 5 HOH A 128 728 714 HOH HOH . 
Q 5 HOH A 129 729 615 HOH HOH . 
Q 5 HOH A 130 730 657 HOH HOH . 
Q 5 HOH A 131 731 721 HOH HOH . 
Q 5 HOH A 132 732 734 HOH HOH . 
Q 5 HOH A 133 733 650 HOH HOH . 
Q 5 HOH A 134 734 616 HOH HOH . 
Q 5 HOH A 135 735 729 HOH HOH . 
Q 5 HOH A 136 736 683 HOH HOH . 
Q 5 HOH A 137 737 663 HOH HOH . 
Q 5 HOH A 138 738 697 HOH HOH . 
Q 5 HOH A 139 739 676 HOH HOH . 
Q 5 HOH A 140 740 647 HOH HOH . 
Q 5 HOH A 141 741 692 HOH HOH . 
Q 5 HOH A 142 742 625 HOH HOH . 
Q 5 HOH A 143 743 745 HOH HOH . 
Q 5 HOH A 144 744 719 HOH HOH . 
Q 5 HOH A 145 745 627 HOH HOH . 
Q 5 HOH A 146 746 730 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . P 4 24.042 9.081 16.996 1 9.77 ? C1 RET 515 A 1 
HETATM 2 C C2 RET . . . P 4 24.798 10.386 17.28 1 10.97 ? C2 RET 515 A 1 
HETATM 3 C C3 RET . . . P 4 24.281 11.123 18.496 1 12.5 ? C3 RET 515 A 1 
HETATM 4 C C4 RET . . . P 4 22.866 11.542 18.173 1 11.93 ? C4 RET 515 A 1 
HETATM 5 C C5 RET . . . P 4 22.014 10.437 17.635 1 10.75 ? C5 RET 515 A 1 
HETATM 6 C C6 RET . . . P 4 22.533 9.292 17.116 1 10.04 ? C6 RET 515 A 1 
HETATM 7 C C7 RET . . . P 4 21.627 8.244 16.624 1 10.82 ? C7 RET 515 A 1 
HETATM 8 C C8 RET . . . P 4 21.839 6.932 16.415 1 10.3 ? C8 RET 515 A 1 
HETATM 9 C C9 RET . . . P 4 20.821 5.98 15.996 1 12.1 ? C9 RET 515 A 1 
HETATM 10 C C10 RET . . . P 4 21.265 4.718 15.81 1 11.27 ? C10 RET 515 A 1 
HETATM 11 C C11 RET . . . P 4 20.444 3.594 15.432 1 12.6 ? C11 RET 515 A 1 
HETATM 12 C C12 RET . . . P 4 20.967 2.387 15.182 1 12.74 ? C12 RET 515 A 1 
HETATM 13 C C13 RET . . . P 4 20.319 1.111 14.917 1 11.41 ? C13 RET 515 A 1 
HETATM 14 C C14 RET . . . P 4 21.112 0.03 14.689 1 14.29 ? C14 RET 515 A 1 
HETATM 15 C C15 RET . . . P 4 20.676 -1.242 14.06 1 16.79 ? C15 RET 515 A 1 
HETATM 16 C C16 RET . . . P 4 24.599 8.034 17.967 1 12.64 ? C16 RET 515 A 1 
HETATM 17 C C17 RET . . . P 4 24.412 8.677 15.565 1 11.86 ? C17 RET 515 A 1 
HETATM 18 C C18 RET . . . P 4 20.539 10.725 17.747 1 13.09 ? C18 RET 515 A 1 
HETATM 19 C C19 RET . . . P 4 19.388 6.316 16.241 1 11.21 ? C19 RET 515 A 1 
HETATM 20 C C20 RET . . . P 4 18.831 1.113 14.949 1 13.01 ? C20 RET 515 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#