data_9G2K # _model_server_result.job_id SNZXfMPk3otzYRWk4v2znw _model_server_result.datetime_utc '2024-12-25 09:24:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 9G2K # _exptl.entry_id 9G2K _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADP ORTHOVANADATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G2K _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 385 A HIS 393 1_555 E ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A NE2 HIS 431 A HIS 439 1_555 E ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A NE2 HIS 436 A HIS 444 1_555 E ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 A OG SER 686 A SER 694 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc5 A OE1 GLN 727 A GLN 735 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc6 C O1B AOV . A AOV 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 C O1G AOV . A AOV 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc8 B OG1 THR 371 B THR 371 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 B OE1 GLN 412 B GLN 412 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc10 F O1B AOV . B AOV 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc11 F O2B AOV . B AOV 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc12 F O3B AOV . B AOV 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? # _chem_comp.formula 'C10 H17 N5 O14 P2 V' _chem_comp.formula_weight 544.156 _chem_comp.id AOV _chem_comp.mon_nstd_flag . _chem_comp.name 'ADP ORTHOVANADATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B AOV doub 13 n n PB O2B AOV sing 14 n n PB O3B AOV sing 15 n n PB O3A AOV sing 16 n n O3B VG AOV sing 17 n n PA O1A AOV doub 18 n n PA O2A AOV sing 19 n n PA O3A AOV sing 20 n n PA O5' AOV sing 21 n n O5' C5' AOV sing 22 n n C5' C4' AOV sing 23 n n C4' O4' AOV sing 24 n n C4' C3' AOV sing 25 n n O4' C1' AOV sing 26 n n C3' O3' AOV sing 27 n n C3' C2' AOV sing 28 n n C2' O2' AOV sing 29 n n C2' C1' AOV sing 30 n n C1' N9 AOV sing 31 n n N9 C8 AOV sing 32 n y N9 C4 AOV sing 33 n y C8 N7 AOV doub 34 n y N7 C5 AOV sing 35 n y C5 C6 AOV sing 36 n y C5 C4 AOV doub 37 n y C6 N6 AOV sing 38 n n C6 N1 AOV doub 39 n y N1 C2 AOV sing 40 n y C2 N3 AOV doub 41 n y N3 C4 AOV sing 42 n y VG O1G AOV doub 43 n n VG O2G AOV sing 44 n n VG O3G AOV sing 45 n n VG O4G AOV sing 46 n n O2B H2B AOV sing 47 n n O2A H2A AOV sing 48 n n C5' "H5'1" AOV sing 49 n n C5' "H5'2" AOV sing 50 n n C4' H4' AOV sing 51 n n C3' H3' AOV sing 52 n n C1' H1' AOV sing 53 n n O3' HA AOV sing 54 n n C2' H2' AOV sing 55 n n O2' HB AOV sing 56 n n C8 H8 AOV sing 57 n n N6 H61N AOV sing 58 n n N6 H62N AOV sing 59 n n C2 H2 AOV sing 60 n n O2G H2G1 AOV sing 61 n n O3G H3G1 AOV sing 62 n n O4G H4G1 AOV sing 63 n n # _atom_sites.entry_id 9G2K _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AOV A 1 1001 901 AOV AOV . D 4 MG A 1 1002 902 MG MG . E 5 ZN A 1 1003 903 ZN ZN . F 3 AOV B 1 601 601 AOV AOV . G 4 MG B 1 602 602 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB AOV . . . F 3 162.382 145.637 198.424 1 51.02 ? PB AOV 601 B 1 HETATM 2 O O1B AOV . . . F 3 161.932 145.138 199.776 1 50.36 ? O1B AOV 601 B 1 HETATM 3 O O2B AOV . . . F 3 161.445 145.083 197.392 1 50.4 ? O2B AOV 601 B 1 HETATM 4 O O3B AOV . . . F 3 162.232 147.277 198.271 1 54.49 ? O3B AOV 601 B 1 HETATM 5 P PA AOV . . . F 3 164.14 144.258 196.618 1 51.16 ? PA AOV 601 B 1 HETATM 6 O O1A AOV . . . F 3 163.738 145.109 195.44 1 49.65 ? O1A AOV 601 B 1 HETATM 7 O O2A AOV . . . F 3 163.267 143.03 196.633 1 59.42 ? O2A AOV 601 B 1 HETATM 8 O O3A AOV . . . F 3 163.897 145.098 198.027 1 37.78 ? O3A AOV 601 B 1 HETATM 9 O O5' AOV . . . F 3 165.71 143.763 196.415 1 49.69 ? O5' AOV 601 B 1 HETATM 10 C C5' AOV . . . F 3 166.762 144.547 196.925 1 52.76 ? C5' AOV 601 B 1 HETATM 11 C C4' AOV . . . F 3 167.887 144.619 195.831 1 43.41 ? C4' AOV 601 B 1 HETATM 12 O O4' AOV . . . F 3 167.426 144.213 194.716 1 39.13 ? O4' AOV 601 B 1 HETATM 13 C C3' AOV . . . F 3 168.294 146.105 195.624 1 54.12 ? C3' AOV 601 B 1 HETATM 14 O O3' AOV . . . F 3 169.625 146.262 195.87 1 49.1 ? O3' AOV 601 B 1 HETATM 15 C C2' AOV . . . F 3 167.986 146.418 194.171 1 54.79 ? C2' AOV 601 B 1 HETATM 16 O O2' AOV . . . F 3 169.114 147.236 193.578 1 51.28 ? O2' AOV 601 B 1 HETATM 17 C C1' AOV . . . F 3 167.914 145.264 193.585 1 47.83 ? C1' AOV 601 B 1 HETATM 18 N N9 AOV . . . F 3 166.94 145.303 192.515 1 46.85 ? N9 AOV 601 B 1 HETATM 19 C C8 AOV . . . F 3 165.628 145.397 192.669 1 40.38 ? C8 AOV 601 B 1 HETATM 20 N N7 AOV . . . F 3 165.042 145.402 191.48 1 39.1 ? N7 AOV 601 B 1 HETATM 21 C C5 AOV . . . F 3 166.006 145.307 190.547 1 50.41 ? C5 AOV 601 B 1 HETATM 22 C C6 AOV . . . F 3 166.012 145.264 189.142 1 50.82 ? C6 AOV 601 B 1 HETATM 23 N N6 AOV . . . F 3 164.755 145.328 188.402 1 49.24 ? N6 AOV 601 B 1 HETATM 24 N N1 AOV . . . F 3 167.169 145.164 188.499 1 44.91 ? N1 AOV 601 B 1 HETATM 25 C C2 AOV . . . F 3 168.323 145.105 189.157 1 45.59 ? C2 AOV 601 B 1 HETATM 26 N N3 AOV . . . F 3 168.352 145.143 190.483 1 47.42 ? N3 AOV 601 B 1 HETATM 27 C C4 AOV . . . F 3 167.218 145.243 191.199 1 52.16 ? C4 AOV 601 B 1 HETATM 28 V VG AOV . . . F 3 162.924 148.421 199.896 1 63.24 ? VG AOV 601 B 1 HETATM 29 O O1G AOV . . . F 3 164.314 149.868 199.269 1 62.62 ? O1G AOV 601 B 1 HETATM 30 O O2G AOV . . . F 3 163.889 146.644 200.481 1 57.15 ? O2G AOV 601 B 1 HETATM 31 O O3G AOV . . . F 3 160.937 149.102 199.777 1 42.13 ? O3G AOV 601 B 1 HETATM 32 O O4G AOV . . . F 3 162.434 148.585 201.934 1 47.91 ? O4G AOV 601 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 500 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #