data_9G2S
#
_model_server_result.job_id            ojrv54TbE4DXuvQ4vShhag 
_model_server_result.datetime_utc      '2025-09-09 16:01:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9g2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    9G2S 
#
_exptl.entry_id    9G2S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9G2S 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9G2S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 381 A SER 694 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc2 A OE1 GLN 422 A GLN 735 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc3 C O2G ATP . A ATP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc4 C O2B ATP . A ATP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc5 B OG1 THR 371 B THR 371 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc6 B OE1 GLN 412 B GLN 412 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc7 E O1G ATP . B ATP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc8 E O2B ATP . B ATP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     9G2S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ATP A 1 1001 901 ATP ATP . 
D 4 MG A 1 1002 902 MG MG . 
E 3 ATP B 1 601 601 ATP ATP . 
F 4 MG B 1 602 602 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 135.373 138.652 98.106 1 29.87 ? PG ATP 1001 A 1 
HETATM 2 O O1G ATP . . . C 3 135.451 138.736 96.625 1 37.23 ? O1G ATP 1001 A 1 
HETATM 3 O O2G ATP . . . C 3 136.721 138.378 98.773 1 25.98 ? O2G ATP 1001 A 1 
HETATM 4 O O3G ATP . . . C 3 134.725 139.872 98.758 1 34.62 ? O3G ATP 1001 A 1 
HETATM 5 P PB ATP . . . C 3 134.496 135.847 98.625 1 30.5 ? PB ATP 1001 A 1 
HETATM 6 O O1B ATP . . . C 3 134.112 135.23 97.346 1 27.15 ? O1B ATP 1001 A 1 
HETATM 7 O O2B ATP . . . C 3 135.872 135.471 99.162 1 32.07 ? O2B ATP 1001 A 1 
HETATM 8 O O3B ATP . . . C 3 134.452 137.427 98.549 1 35.92 ? O3B ATP 1001 A 1 
HETATM 9 P PA ATP . . . C 3 133.476 135.161 101.311 1 22.63 ? PA ATP 1001 A 1 
HETATM 10 O O1A ATP . . . C 3 134.542 135.892 102.023 1 20.79 ? O1A ATP 1001 A 1 
HETATM 11 O O2A ATP . . . C 3 133.547 133.643 101.412 1 27.61 ? O2A ATP 1001 A 1 
HETATM 12 O O3A ATP . . . C 3 133.439 135.537 99.773 1 25.93 ? O3A ATP 1001 A 1 
HETATM 13 O O5' ATP . . . C 3 132.051 135.605 101.821 1 30.78 ? O5' ATP 1001 A 1 
HETATM 14 C C5' ATP . . . C 3 130.854 134.913 101.408 1 24.65 ? C5' ATP 1001 A 1 
HETATM 15 C C4' ATP . . . C 3 129.788 135.225 102.417 1 21.84 ? C4' ATP 1001 A 1 
HETATM 16 O O4' ATP . . . C 3 130.308 134.78 103.683 1 23.38 ? O4' ATP 1001 A 1 
HETATM 17 C C3' ATP . . . C 3 129.611 136.74 102.549 1 26.41 ? C3' ATP 1001 A 1 
HETATM 18 O O3' ATP . . . C 3 128.213 136.957 102.673 1 35.74 ? O3' ATP 1001 A 1 
HETATM 19 C C2' ATP . . . C 3 130.223 137.072 103.916 1 24.28 ? C2' ATP 1001 A 1 
HETATM 20 O O2' ATP . . . C 3 129.292 137.939 104.546 1 27.61 ? O2' ATP 1001 A 1 
HETATM 21 C C1' ATP . . . C 3 130.057 135.753 104.659 1 23.05 ? C1' ATP 1001 A 1 
HETATM 22 N N9 ATP . . . C 3 131.085 135.574 105.676 1 24.01 ? N9 ATP 1001 A 1 
HETATM 23 C C8 ATP . . . C 3 132.441 135.543 105.48 1 25.93 ? C8 ATP 1001 A 1 
HETATM 24 N N7 ATP . . . C 3 133.137 135.357 106.574 1 28.87 ? N7 ATP 1001 A 1 
HETATM 25 C C5 ATP . . . C 3 132.17 135.241 107.56 1 26.17 ? C5 ATP 1001 A 1 
HETATM 26 C C6 ATP . . . C 3 132.251 135.023 108.948 1 27.91 ? C6 ATP 1001 A 1 
HETATM 27 N N6 ATP . . . C 3 133.403 134.878 109.611 1 31 ? N6 ATP 1001 A 1 
HETATM 28 N N1 ATP . . . C 3 131.095 134.959 109.644 1 23.31 ? N1 ATP 1001 A 1 
HETATM 29 C C2 ATP . . . C 3 129.941 135.101 108.988 1 21.71 ? C2 ATP 1001 A 1 
HETATM 30 N N3 ATP . . . C 3 129.741 135.309 107.685 1 24.3 ? N3 ATP 1001 A 1 
HETATM 31 C C4 ATP . . . C 3 130.9 135.368 107.021 1 24.78 ? C4 ATP 1001 A 1 
HETATM 32 H "H5'1" ATP . . . C 3 131.018 133.957 101.396 1 27.06 ? "H5'1" ATP 1001 A 1 
HETATM 33 H "H5'2" ATP . . . C 3 130.579 135.209 100.527 1 26.7 ? "H5'2" ATP 1001 A 1 
HETATM 34 H H4' ATP . . . C 3 128.949 134.791 102.198 1 24.94 ? H4' ATP 1001 A 1 
HETATM 35 H H3' ATP . . . C 3 130.014 137.239 101.822 1 26.87 ? H3' ATP 1001 A 1 
HETATM 36 H HO3' ATP . . . C 3 128.092 137.798 102.659 1 31.62 ? HO3' ATP 1001 A 1 
HETATM 37 H H2' ATP . . . C 3 131.125 137.426 103.874 1 25.56 ? H2' ATP 1001 A 1 
HETATM 38 H HO2' ATP . . . C 3 129.284 138.66 104.097 1 26.37 ? HO2' ATP 1001 A 1 
HETATM 39 H H1' ATP . . . C 3 129.168 135.671 105.039 1 25.02 ? H1' ATP 1001 A 1 
HETATM 40 H H8 ATP . . . C 3 132.833 135.66 104.645 1 25.57 ? H8 ATP 1001 A 1 
HETATM 41 H HN61 ATP . . . C 3 133.407 134.541 110.402 1 29.1 ? HN61 ATP 1001 A 1 
HETATM 42 H HN62 ATP . . . C 3 134.142 135.121 109.245 1 28.6 ? HN62 ATP 1001 A 1 
HETATM 43 H H2 ATP . . . C 3 129.174 135.05 109.51 1 25.39 ? H2 ATP 1001 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#