data_9G3W # _model_server_result.job_id GOBjEEaZsoGfqrvMwIYAcg _model_server_result.datetime_utc '2025-07-27 19:46:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 9G3W # _exptl.entry_id 9G3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.184 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-MERCAPTO-2-NITRO-BENZOIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G3W _cell.length_a 53.8 _cell.length_b 83.5 _cell.length_c 100.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 62 X CYS 41 1_555 E S5 MNB . X MNB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? covale ? covale2 A SG CYS 129 X CYS 108 1_555 D S5 MNB . X MNB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale3 A C SER 130 X SER 109 1_555 A N CSO 131 X CSO 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C CSO 131 X CSO 110 1_555 A N LEU 132 X LEU 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B SG CYS 39 A CYS 18 1_555 F S5 MNB . A MNB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? covale ? covale6 B SG CYS 62 A CYS 41 1_555 H S5 MNB . A MNB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? covale ? covale7 B SG CYS 129 A CYS 108 1_555 G S5 MNB . A MNB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? covale ? covale8 B C SER 130 A SER 109 1_555 B N CSO 131 A CSO 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 B C CSO 131 A CSO 110 1_555 B N LEU 132 A LEU 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C7 H5 N O4 S' _chem_comp.formula_weight 199.184 _chem_comp.id MNB _chem_comp.mon_nstd_flag . _chem_comp.name '5-MERCAPTO-2-NITRO-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 MNB doub 251 n y C6 C5 MNB sing 252 n y C6 HC6 MNB sing 253 n n C1 C2 MNB sing 254 n y C1 C10 MNB sing 255 n n C2 C3 MNB doub 256 n y C2 N7 MNB sing 257 n n C3 C4 MNB sing 258 n y C3 HC3 MNB sing 259 n n C4 C5 MNB doub 260 n y C4 HC4 MNB sing 261 n n C5 S5 MNB sing 262 n n S5 HS5 MNB sing 263 n n C10 O12 MNB sing 264 n n C10 O11 MNB doub 265 n n O12 H12 MNB sing 266 n n N7 O9 MNB doub 267 n n N7 O8 MNB sing 268 n n # _atom_sites.entry_id 9G3W _atom_sites.fract_transf_matrix[1][1] 0.018587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MNB X 1 201 345 MNB MNB . D 2 MNB X 1 202 346 MNB MNB . E 2 MNB X 1 203 347 MNB MNB . F 2 MNB A 1 201 338 MNB MNB . G 2 MNB A 1 202 339 MNB MNB . H 2 MNB A 1 203 340 MNB MNB . I 3 HOH X 1 301 80 HOH HOH . I 3 HOH X 2 302 67 HOH HOH . I 3 HOH X 3 303 29 HOH HOH . I 3 HOH X 4 304 35 HOH HOH . I 3 HOH X 5 305 87 HOH HOH . I 3 HOH X 6 306 74 HOH HOH . I 3 HOH X 7 307 102 HOH HOH . I 3 HOH X 8 308 20 HOH HOH . I 3 HOH X 9 309 36 HOH HOH . I 3 HOH X 10 310 53 HOH HOH . I 3 HOH X 11 311 1 HOH HOH . I 3 HOH X 12 312 66 HOH HOH . I 3 HOH X 13 313 17 HOH HOH . I 3 HOH X 14 314 54 HOH HOH . I 3 HOH X 15 315 59 HOH HOH . I 3 HOH X 16 316 58 HOH HOH . I 3 HOH X 17 317 49 HOH HOH . I 3 HOH X 18 318 50 HOH HOH . I 3 HOH X 19 319 12 HOH HOH . I 3 HOH X 20 320 62 HOH HOH . I 3 HOH X 21 321 71 HOH HOH . I 3 HOH X 22 322 22 HOH HOH . I 3 HOH X 23 323 47 HOH HOH . I 3 HOH X 24 324 9 HOH HOH . I 3 HOH X 25 325 23 HOH HOH . I 3 HOH X 26 326 77 HOH HOH . I 3 HOH X 27 327 8 HOH HOH . I 3 HOH X 28 328 99 HOH HOH . I 3 HOH X 29 329 19 HOH HOH . I 3 HOH X 30 330 48 HOH HOH . I 3 HOH X 31 331 63 HOH HOH . I 3 HOH X 32 332 39 HOH HOH . I 3 HOH X 33 333 93 HOH HOH . I 3 HOH X 34 334 13 HOH HOH . I 3 HOH X 35 335 14 HOH HOH . I 3 HOH X 36 336 51 HOH HOH . I 3 HOH X 37 337 45 HOH HOH . I 3 HOH X 38 338 18 HOH HOH . I 3 HOH X 39 339 61 HOH HOH . I 3 HOH X 40 340 60 HOH HOH . I 3 HOH X 41 341 81 HOH HOH . I 3 HOH X 42 342 100 HOH HOH . I 3 HOH X 43 343 64 HOH HOH . I 3 HOH X 44 344 40 HOH HOH . I 3 HOH X 45 345 84 HOH HOH . I 3 HOH X 46 346 98 HOH HOH . I 3 HOH X 47 347 69 HOH HOH . I 3 HOH X 48 348 28 HOH HOH . I 3 HOH X 49 349 86 HOH HOH . I 3 HOH X 50 350 70 HOH HOH . I 3 HOH X 51 351 82 HOH HOH . J 3 HOH A 1 301 38 HOH HOH . J 3 HOH A 2 302 83 HOH HOH . J 3 HOH A 3 303 24 HOH HOH . J 3 HOH A 4 304 7 HOH HOH . J 3 HOH A 5 305 41 HOH HOH . J 3 HOH A 6 306 85 HOH HOH . J 3 HOH A 7 307 94 HOH HOH . J 3 HOH A 8 308 52 HOH HOH . J 3 HOH A 9 309 6 HOH HOH . J 3 HOH A 10 310 68 HOH HOH . J 3 HOH A 11 311 27 HOH HOH . J 3 HOH A 12 312 10 HOH HOH . J 3 HOH A 13 313 56 HOH HOH . J 3 HOH A 14 314 73 HOH HOH . J 3 HOH A 15 315 34 HOH HOH . J 3 HOH A 16 316 4 HOH HOH . J 3 HOH A 17 317 76 HOH HOH . J 3 HOH A 18 318 90 HOH HOH . J 3 HOH A 19 319 11 HOH HOH . J 3 HOH A 20 320 3 HOH HOH . J 3 HOH A 21 321 21 HOH HOH . J 3 HOH A 22 322 15 HOH HOH . J 3 HOH A 23 323 32 HOH HOH . J 3 HOH A 24 324 33 HOH HOH . J 3 HOH A 25 325 37 HOH HOH . J 3 HOH A 26 326 30 HOH HOH . J 3 HOH A 27 327 91 HOH HOH . J 3 HOH A 28 328 78 HOH HOH . J 3 HOH A 29 329 75 HOH HOH . J 3 HOH A 30 330 5 HOH HOH . J 3 HOH A 31 331 72 HOH HOH . J 3 HOH A 32 332 97 HOH HOH . J 3 HOH A 33 333 2 HOH HOH . J 3 HOH A 34 334 31 HOH HOH . J 3 HOH A 35 335 44 HOH HOH . J 3 HOH A 36 336 46 HOH HOH . J 3 HOH A 37 337 88 HOH HOH . J 3 HOH A 38 338 103 HOH HOH . J 3 HOH A 39 339 25 HOH HOH . J 3 HOH A 40 340 43 HOH HOH . J 3 HOH A 41 341 55 HOH HOH . J 3 HOH A 42 342 92 HOH HOH . J 3 HOH A 43 343 26 HOH HOH . J 3 HOH A 44 344 57 HOH HOH . J 3 HOH A 45 345 16 HOH HOH . J 3 HOH A 46 346 95 HOH HOH . J 3 HOH A 47 347 65 HOH HOH . J 3 HOH A 48 348 79 HOH HOH . J 3 HOH A 49 349 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 MNB . . . C 2 -49.988 17.076 -27.71 1 62.48 ? C6 MNB 201 X 1 HETATM 2 C C1 MNB . . . C 2 -50.851 17.137 -28.796 1 66.08 ? C1 MNB 201 X 1 HETATM 3 C C2 MNB . . . C 2 -51.443 18.377 -29.104 1 70.48 ? C2 MNB 201 X 1 HETATM 4 C C3 MNB . . . C 2 -51.217 19.469 -28.332 1 65.15 ? C3 MNB 201 X 1 HETATM 5 C C4 MNB . . . C 2 -50.391 19.361 -27.226 1 58.83 ? C4 MNB 201 X 1 HETATM 6 C C5 MNB . . . C 2 -49.793 18.154 -26.913 1 57.94 ? C5 MNB 201 X 1 HETATM 7 S S5 MNB . . . C 2 -48.723 17.821 -25.542 1 70.73 ? S5 MNB 201 X 1 HETATM 8 C C10 MNB . . . C 2 -51.022 15.883 -29.6 1 58.76 ? C10 MNB 201 X 1 HETATM 9 O O12 MNB . . . C 2 -50.047 15.123 -29.664 1 60.04 ? O12 MNB 201 X 1 HETATM 10 O O11 MNB . . . C 2 -52.17 15.595 -29.976 1 62.06 ? O11 MNB 201 X 1 HETATM 11 N N7 MNB . . . C 2 -52.274 18.575 -30.29 1 86.43 ? N7 MNB 201 X 1 HETATM 12 O O9 MNB . . . C 2 -52.962 19.586 -30.349 1 101.01 ? O9 MNB 201 X 1 HETATM 13 O O8 MNB . . . C 2 -52.152 17.795 -31.227 1 89.72 ? O8 MNB 201 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #