data_9G48 # _model_server_result.job_id I1GC3K_kGjgm6DYpLYjiYQ _model_server_result.datetime_utc '2024-11-21 15:15:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 9G48 # _exptl.entry_id 9G48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9G48 _cell.length_a 60.14 _cell.length_b 60.14 _cell.length_c 246.24 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 23 C CYS 22 1_555 C SG CYS 97 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 C SG CYS 51 C CYS 50 1_555 C SG CYS 113 C CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 D SG CYS 23 D CYS 22 1_555 D SG CYS 97 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 51 D CYS 50 1_555 D SG CYS 113 D CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OE1 GLU 75 A GLU 62 1_555 E CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 A OE2 GLU 75 A GLU 62 1_555 E CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 A OD2 ASP 84 A ASP 71 1_555 E CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 A OD1 ASP 110 A ASP 97 1_555 F CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 A OD2 ASP 110 A ASP 97 1_555 F CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 E CD CD . A CD 201 1_555 L O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc7 E CD CD . A CD 201 1_555 L O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc8 F CD CD . A CD 202 1_555 L O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc9 F CD CD . A CD 202 1_555 L O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc10 L O HOH . A HOH 335 1_555 I CD CD . D CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc11 B OE2 GLU 75 B GLU 62 1_555 H CD CD . B CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc12 B OD2 ASP 84 B ASP 71 1_555 H CD CD . B CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc13 H CD CD . B CD 201 1_555 M O HOH . B HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc14 H CD CD . B CD 201 1_555 M O HOH . B HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 D OE2 GLU 45 D GLU 44 1_555 I CD CD . D CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc16 D OE1 GLU 90 D GLU 89 1_555 J CD CD . D CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc17 D OE2 GLU 90 D GLU 89 1_555 J CD CD . D CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc18 I CD CD . D CD 201 1_555 O O HOH . D HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc19 I CD CD . D CD 201 1_555 O O HOH . D HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9G48 _atom_sites.fract_transf_matrix[1][1] 0.016628 _atom_sites.fract_transf_matrix[1][2] 0.0096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CD A 1 201 1 CD CD . F 3 CD A 1 202 4 CD CD . G 4 PGE A 1 203 7 PGE PGE . H 3 CD B 1 201 2 CD CD . I 3 CD D 1 201 3 CD CD . J 3 CD D 1 202 5 CD CD . K 5 PG0 D 1 203 6 PG0 PGE . L 6 HOH A 1 301 114 HOH HOH . L 6 HOH A 2 302 48 HOH HOH . L 6 HOH A 3 303 181 HOH HOH . L 6 HOH A 4 304 115 HOH HOH . L 6 HOH A 5 305 182 HOH HOH . L 6 HOH A 6 306 183 HOH HOH . L 6 HOH A 7 307 62 HOH HOH . L 6 HOH A 8 308 36 HOH HOH . L 6 HOH A 9 309 18 HOH HOH . L 6 HOH A 10 310 175 HOH HOH . L 6 HOH A 11 311 8 HOH HOH . L 6 HOH A 12 312 46 HOH HOH . L 6 HOH A 13 313 25 HOH HOH . L 6 HOH A 14 314 55 HOH HOH . L 6 HOH A 15 315 63 HOH HOH . L 6 HOH A 16 316 51 HOH HOH . L 6 HOH A 17 317 176 HOH HOH . L 6 HOH A 18 318 38 HOH HOH . L 6 HOH A 19 319 179 HOH HOH . L 6 HOH A 20 320 177 HOH HOH . L 6 HOH A 21 321 42 HOH HOH . L 6 HOH A 22 322 45 HOH HOH . L 6 HOH A 23 323 173 HOH HOH . L 6 HOH A 24 324 37 HOH HOH . L 6 HOH A 25 325 116 HOH HOH . L 6 HOH A 26 326 9 HOH HOH . L 6 HOH A 27 327 15 HOH HOH . L 6 HOH A 28 328 17 HOH HOH . L 6 HOH A 29 329 58 HOH HOH . L 6 HOH A 30 330 21 HOH HOH . L 6 HOH A 31 331 16 HOH HOH . L 6 HOH A 32 332 120 HOH HOH . L 6 HOH A 33 333 184 HOH HOH . L 6 HOH A 34 334 178 HOH HOH . L 6 HOH A 35 335 13 HOH HOH . L 6 HOH A 36 336 180 HOH HOH . L 6 HOH A 37 337 146 HOH HOH . L 6 HOH A 38 338 92 HOH HOH . L 6 HOH A 39 339 60 HOH HOH . L 6 HOH A 40 340 39 HOH HOH . L 6 HOH A 41 341 22 HOH HOH . L 6 HOH A 42 342 57 HOH HOH . L 6 HOH A 43 343 27 HOH HOH . L 6 HOH A 44 344 171 HOH HOH . L 6 HOH A 45 345 26 HOH HOH . L 6 HOH A 46 346 56 HOH HOH . L 6 HOH A 47 347 24 HOH HOH . L 6 HOH A 48 348 61 HOH HOH . L 6 HOH A 49 349 172 HOH HOH . L 6 HOH A 50 350 119 HOH HOH . M 6 HOH B 1 301 90 HOH HOH . M 6 HOH B 2 302 117 HOH HOH . M 6 HOH B 3 303 53 HOH HOH . M 6 HOH B 4 304 123 HOH HOH . M 6 HOH B 5 305 71 HOH HOH . M 6 HOH B 6 306 19 HOH HOH . M 6 HOH B 7 307 134 HOH HOH . M 6 HOH B 8 308 54 HOH HOH . M 6 HOH B 9 309 34 HOH HOH . M 6 HOH B 10 310 74 HOH HOH . M 6 HOH B 11 311 66 HOH HOH . M 6 HOH B 12 312 64 HOH HOH . M 6 HOH B 13 313 124 HOH HOH . M 6 HOH B 14 314 127 HOH HOH . M 6 HOH B 15 315 52 HOH HOH . M 6 HOH B 16 316 132 HOH HOH . M 6 HOH B 17 317 77 HOH HOH . M 6 HOH B 18 318 10 HOH HOH . M 6 HOH B 19 319 122 HOH HOH . M 6 HOH B 20 320 128 HOH HOH . M 6 HOH B 21 321 44 HOH HOH . M 6 HOH B 22 322 138 HOH HOH . M 6 HOH B 23 323 72 HOH HOH . M 6 HOH B 24 324 65 HOH HOH . M 6 HOH B 25 325 126 HOH HOH . M 6 HOH B 26 326 11 HOH HOH . M 6 HOH B 27 327 20 HOH HOH . M 6 HOH B 28 328 47 HOH HOH . M 6 HOH B 29 329 139 HOH HOH . M 6 HOH B 30 330 121 HOH HOH . M 6 HOH B 31 331 125 HOH HOH . M 6 HOH B 32 332 130 HOH HOH . M 6 HOH B 33 333 169 HOH HOH . M 6 HOH B 34 334 43 HOH HOH . N 6 HOH C 1 201 187 HOH HOH . N 6 HOH C 2 202 144 HOH HOH . N 6 HOH C 3 203 98 HOH HOH . N 6 HOH C 4 204 83 HOH HOH . N 6 HOH C 5 205 118 HOH HOH . N 6 HOH C 6 206 86 HOH HOH . N 6 HOH C 7 207 110 HOH HOH . N 6 HOH C 8 208 156 HOH HOH . N 6 HOH C 9 209 140 HOH HOH . N 6 HOH C 10 210 157 HOH HOH . N 6 HOH C 11 211 93 HOH HOH . N 6 HOH C 12 212 131 HOH HOH . N 6 HOH C 13 213 109 HOH HOH . N 6 HOH C 14 214 158 HOH HOH . N 6 HOH C 15 215 50 HOH HOH . N 6 HOH C 16 216 112 HOH HOH . N 6 HOH C 17 217 91 HOH HOH . N 6 HOH C 18 218 147 HOH HOH . N 6 HOH C 19 219 113 HOH HOH . N 6 HOH C 20 220 111 HOH HOH . N 6 HOH C 21 221 189 HOH HOH . N 6 HOH C 22 222 97 HOH HOH . N 6 HOH C 23 223 40 HOH HOH . N 6 HOH C 24 224 141 HOH HOH . N 6 HOH C 25 225 78 HOH HOH . N 6 HOH C 26 226 94 HOH HOH . N 6 HOH C 27 227 59 HOH HOH . N 6 HOH C 28 228 108 HOH HOH . N 6 HOH C 29 229 82 HOH HOH . N 6 HOH C 30 230 185 HOH HOH . N 6 HOH C 31 231 81 HOH HOH . N 6 HOH C 32 232 96 HOH HOH . N 6 HOH C 33 233 99 HOH HOH . N 6 HOH C 34 234 89 HOH HOH . N 6 HOH C 35 235 148 HOH HOH . N 6 HOH C 36 236 84 HOH HOH . N 6 HOH C 37 237 153 HOH HOH . N 6 HOH C 38 238 155 HOH HOH . N 6 HOH C 39 239 80 HOH HOH . N 6 HOH C 40 240 79 HOH HOH . N 6 HOH C 41 241 143 HOH HOH . N 6 HOH C 42 242 145 HOH HOH . N 6 HOH C 43 243 95 HOH HOH . N 6 HOH C 44 244 152 HOH HOH . N 6 HOH C 45 245 142 HOH HOH . N 6 HOH C 46 246 129 HOH HOH . N 6 HOH C 47 247 151 HOH HOH . N 6 HOH C 48 248 160 HOH HOH . N 6 HOH C 49 249 85 HOH HOH . N 6 HOH C 50 250 159 HOH HOH . N 6 HOH C 51 251 49 HOH HOH . N 6 HOH C 52 252 41 HOH HOH . N 6 HOH C 53 253 150 HOH HOH . N 6 HOH C 54 254 154 HOH HOH . N 6 HOH C 55 255 149 HOH HOH . O 6 HOH D 1 301 102 HOH HOH . O 6 HOH D 2 302 103 HOH HOH . O 6 HOH D 3 303 28 HOH HOH . O 6 HOH D 4 304 68 HOH HOH . O 6 HOH D 5 305 170 HOH HOH . O 6 HOH D 6 306 35 HOH HOH . O 6 HOH D 7 307 167 HOH HOH . O 6 HOH D 8 308 76 HOH HOH . O 6 HOH D 9 309 23 HOH HOH . O 6 HOH D 10 310 75 HOH HOH . O 6 HOH D 11 311 70 HOH HOH . O 6 HOH D 12 312 31 HOH HOH . O 6 HOH D 13 313 67 HOH HOH . O 6 HOH D 14 314 186 HOH HOH . O 6 HOH D 15 315 168 HOH HOH . O 6 HOH D 16 316 107 HOH HOH . O 6 HOH D 17 317 161 HOH HOH . O 6 HOH D 18 318 135 HOH HOH . O 6 HOH D 19 319 137 HOH HOH . O 6 HOH D 20 320 69 HOH HOH . O 6 HOH D 21 321 133 HOH HOH . O 6 HOH D 22 322 101 HOH HOH . O 6 HOH D 23 323 88 HOH HOH . O 6 HOH D 24 324 105 HOH HOH . O 6 HOH D 25 325 100 HOH HOH . O 6 HOH D 26 326 33 HOH HOH . O 6 HOH D 27 327 12 HOH HOH . O 6 HOH D 28 328 106 HOH HOH . O 6 HOH D 29 329 14 HOH HOH . O 6 HOH D 30 330 104 HOH HOH . O 6 HOH D 31 331 32 HOH HOH . O 6 HOH D 32 332 136 HOH HOH . O 6 HOH D 33 333 188 HOH HOH . O 6 HOH D 34 334 29 HOH HOH . O 6 HOH D 35 335 87 HOH HOH . O 6 HOH D 36 336 164 HOH HOH . O 6 HOH D 37 337 166 HOH HOH . O 6 HOH D 38 338 163 HOH HOH . O 6 HOH D 39 339 73 HOH HOH . O 6 HOH D 40 340 165 HOH HOH . O 6 HOH D 41 341 162 HOH HOH . O 6 HOH D 42 342 30 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.02 _atom_site.Cartn_y -1.451 _atom_site.Cartn_z 9.671 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.68 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #