data_9G4O # _model_server_result.job_id RMZfebzzGYRiO5QoXlyr3w _model_server_result.datetime_utc '2025-08-31 04:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 9G4O # _exptl.entry_id 9G4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 113.3 _cell.angle_beta 99.54 _cell.angle_gamma 95.01 _cell.entry_id 9G4O _cell.length_a 36.155 _cell.length_b 45.702 _cell.length_c 48.44 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 280 n n PA O2A NAD sing 281 n n PA O5B NAD sing 282 n n PA O3 NAD sing 283 n n O2A HOA2 NAD sing 284 n n O5B C5B NAD sing 285 n n C5B C4B NAD sing 286 n n C5B H51A NAD sing 287 n n C5B H52A NAD sing 288 n n C4B O4B NAD sing 289 n n C4B C3B NAD sing 290 n n C4B H4B NAD sing 291 n n O4B C1B NAD sing 292 n n C3B O3B NAD sing 293 n n C3B C2B NAD sing 294 n n C3B H3B NAD sing 295 n n O3B HO3A NAD sing 296 n n C2B O2B NAD sing 297 n n C2B C1B NAD sing 298 n n C2B H2B NAD sing 299 n n O2B HO2A NAD sing 300 n n C1B N9A NAD sing 301 n n C1B H1B NAD sing 302 n n N9A C8A NAD sing 303 n y N9A C4A NAD sing 304 n y C8A N7A NAD doub 305 n y C8A H8A NAD sing 306 n n N7A C5A NAD sing 307 n y C5A C6A NAD sing 308 n y C5A C4A NAD doub 309 n y C6A N6A NAD sing 310 n n C6A N1A NAD doub 311 n y N6A H61A NAD sing 312 n n N6A H62A NAD sing 313 n n N1A C2A NAD sing 314 n y C2A N3A NAD doub 315 n y C2A H2A NAD sing 316 n n N3A C4A NAD sing 317 n y O3 PN NAD sing 318 n n PN O1N NAD doub 319 n n PN O2N NAD sing 320 n n PN O5D NAD sing 321 n n O5D C5D NAD sing 322 n n C5D C4D NAD sing 323 n n C5D H51N NAD sing 324 n n C5D H52N NAD sing 325 n n C4D O4D NAD sing 326 n n C4D C3D NAD sing 327 n n C4D H4D NAD sing 328 n n O4D C1D NAD sing 329 n n C3D O3D NAD sing 330 n n C3D C2D NAD sing 331 n n C3D H3D NAD sing 332 n n O3D HO3N NAD sing 333 n n C2D O2D NAD sing 334 n n C2D C1D NAD sing 335 n n C2D H2D NAD sing 336 n n O2D HO2N NAD sing 337 n n C1D N1N NAD sing 338 n n C1D H1D NAD sing 339 n n N1N C2N NAD sing 340 n y N1N C6N NAD doub 341 n y C2N C3N NAD doub 342 n y C2N H2N NAD sing 343 n n C3N C7N NAD sing 344 n n C3N C4N NAD sing 345 n y C7N O7N NAD doub 346 n n C7N N7N NAD sing 347 n n N7N H71N NAD sing 348 n n N7N H72N NAD sing 349 n n C4N C5N NAD doub 350 n y C4N H4N NAD sing 351 n n C5N C6N NAD sing 352 n y C5N H5N NAD sing 353 n n C6N H6N NAD sing 354 n n # _atom_sites.entry_id 9G4O _atom_sites.fract_transf_matrix[1][1] 0.027659 _atom_sites.fract_transf_matrix[1][2] 0.002427 _atom_sites.fract_transf_matrix[1][3] 0.006231 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021965 _atom_sites.fract_transf_matrix[2][3] 0.010087 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 301 301 MPD MPD . C 2 MPD A 1 302 302 MPD MPD . D 3 NAD A 1 303 303 NAD LIG . E 4 A1IH7 A 1 304 304 A1IH7 FRA . F 5 HOH A 1 401 138 HOH HOH . F 5 HOH A 2 402 156 HOH HOH . F 5 HOH A 3 403 142 HOH HOH . F 5 HOH A 4 404 163 HOH HOH . F 5 HOH A 5 405 16 HOH HOH . F 5 HOH A 6 406 137 HOH HOH . F 5 HOH A 7 407 74 HOH HOH . F 5 HOH A 8 408 154 HOH HOH . F 5 HOH A 9 409 151 HOH HOH . F 5 HOH A 10 410 147 HOH HOH . F 5 HOH A 11 411 61 HOH HOH . F 5 HOH A 12 412 56 HOH HOH . F 5 HOH A 13 413 91 HOH HOH . F 5 HOH A 14 414 155 HOH HOH . F 5 HOH A 15 415 143 HOH HOH . F 5 HOH A 16 416 40 HOH HOH . F 5 HOH A 17 417 28 HOH HOH . F 5 HOH A 18 418 89 HOH HOH . F 5 HOH A 19 419 149 HOH HOH . F 5 HOH A 20 420 41 HOH HOH . F 5 HOH A 21 421 54 HOH HOH . F 5 HOH A 22 422 85 HOH HOH . F 5 HOH A 23 423 141 HOH HOH . F 5 HOH A 24 424 27 HOH HOH . F 5 HOH A 25 425 7 HOH HOH . F 5 HOH A 26 426 90 HOH HOH . F 5 HOH A 27 427 122 HOH HOH . F 5 HOH A 28 428 157 HOH HOH . F 5 HOH A 29 429 48 HOH HOH . F 5 HOH A 30 430 32 HOH HOH . F 5 HOH A 31 431 103 HOH HOH . F 5 HOH A 32 432 2 HOH HOH . F 5 HOH A 33 433 22 HOH HOH . F 5 HOH A 34 434 55 HOH HOH . F 5 HOH A 35 435 59 HOH HOH . F 5 HOH A 36 436 79 HOH HOH . F 5 HOH A 37 437 114 HOH HOH . F 5 HOH A 38 438 8 HOH HOH . F 5 HOH A 39 439 42 HOH HOH . F 5 HOH A 40 440 3 HOH HOH . F 5 HOH A 41 441 20 HOH HOH . F 5 HOH A 42 442 50 HOH HOH . F 5 HOH A 43 443 43 HOH HOH . F 5 HOH A 44 444 29 HOH HOH . F 5 HOH A 45 445 4 HOH HOH . F 5 HOH A 46 446 102 HOH HOH . F 5 HOH A 47 447 68 HOH HOH . F 5 HOH A 48 448 92 HOH HOH . F 5 HOH A 49 449 65 HOH HOH . F 5 HOH A 50 450 71 HOH HOH . F 5 HOH A 51 451 38 HOH HOH . F 5 HOH A 52 452 119 HOH HOH . F 5 HOH A 53 453 62 HOH HOH . F 5 HOH A 54 454 52 HOH HOH . F 5 HOH A 55 455 14 HOH HOH . F 5 HOH A 56 456 44 HOH HOH . F 5 HOH A 57 457 31 HOH HOH . F 5 HOH A 58 458 21 HOH HOH . F 5 HOH A 59 459 34 HOH HOH . F 5 HOH A 60 460 26 HOH HOH . F 5 HOH A 61 461 150 HOH HOH . F 5 HOH A 62 462 140 HOH HOH . F 5 HOH A 63 463 88 HOH HOH . F 5 HOH A 64 464 78 HOH HOH . F 5 HOH A 65 465 39 HOH HOH . F 5 HOH A 66 466 115 HOH HOH . F 5 HOH A 67 467 69 HOH HOH . F 5 HOH A 68 468 116 HOH HOH . F 5 HOH A 69 469 15 HOH HOH . F 5 HOH A 70 470 158 HOH HOH . F 5 HOH A 71 471 36 HOH HOH . F 5 HOH A 72 472 10 HOH HOH . F 5 HOH A 73 473 33 HOH HOH . F 5 HOH A 74 474 84 HOH HOH . F 5 HOH A 75 475 105 HOH HOH . F 5 HOH A 76 476 9 HOH HOH . F 5 HOH A 77 477 25 HOH HOH . F 5 HOH A 78 478 80 HOH HOH . F 5 HOH A 79 479 117 HOH HOH . F 5 HOH A 80 480 13 HOH HOH . F 5 HOH A 81 481 30 HOH HOH . F 5 HOH A 82 482 73 HOH HOH . F 5 HOH A 83 483 106 HOH HOH . F 5 HOH A 84 484 24 HOH HOH . F 5 HOH A 85 485 107 HOH HOH . F 5 HOH A 86 486 46 HOH HOH . F 5 HOH A 87 487 81 HOH HOH . F 5 HOH A 88 488 70 HOH HOH . F 5 HOH A 89 489 49 HOH HOH . F 5 HOH A 90 490 128 HOH HOH . F 5 HOH A 91 491 64 HOH HOH . F 5 HOH A 92 492 58 HOH HOH . F 5 HOH A 93 493 18 HOH HOH . F 5 HOH A 94 494 118 HOH HOH . F 5 HOH A 95 495 72 HOH HOH . F 5 HOH A 96 496 127 HOH HOH . F 5 HOH A 97 497 53 HOH HOH . F 5 HOH A 98 498 101 HOH HOH . F 5 HOH A 99 499 57 HOH HOH . F 5 HOH A 100 500 60 HOH HOH . F 5 HOH A 101 501 82 HOH HOH . F 5 HOH A 102 502 76 HOH HOH . F 5 HOH A 103 503 51 HOH HOH . F 5 HOH A 104 504 19 HOH HOH . F 5 HOH A 105 505 47 HOH HOH . F 5 HOH A 106 506 77 HOH HOH . F 5 HOH A 107 507 113 HOH HOH . F 5 HOH A 108 508 45 HOH HOH . F 5 HOH A 109 509 96 HOH HOH . F 5 HOH A 110 510 6 HOH HOH . F 5 HOH A 111 511 109 HOH HOH . F 5 HOH A 112 512 67 HOH HOH . F 5 HOH A 113 513 99 HOH HOH . F 5 HOH A 114 514 108 HOH HOH . F 5 HOH A 115 515 121 HOH HOH . F 5 HOH A 116 516 112 HOH HOH . F 5 HOH A 117 517 11 HOH HOH . F 5 HOH A 118 518 5 HOH HOH . F 5 HOH A 119 519 130 HOH HOH . F 5 HOH A 120 520 111 HOH HOH . F 5 HOH A 121 521 66 HOH HOH . F 5 HOH A 122 522 146 HOH HOH . F 5 HOH A 123 523 63 HOH HOH . F 5 HOH A 124 524 1 HOH HOH . F 5 HOH A 125 525 17 HOH HOH . F 5 HOH A 126 526 94 HOH HOH . F 5 HOH A 127 527 129 HOH HOH . F 5 HOH A 128 528 97 HOH HOH . F 5 HOH A 129 529 100 HOH HOH . F 5 HOH A 130 530 139 HOH HOH . F 5 HOH A 131 531 23 HOH HOH . F 5 HOH A 132 532 35 HOH HOH . F 5 HOH A 133 533 75 HOH HOH . F 5 HOH A 134 534 12 HOH HOH . F 5 HOH A 135 535 148 HOH HOH . F 5 HOH A 136 536 123 HOH HOH . F 5 HOH A 137 537 87 HOH HOH . F 5 HOH A 138 538 126 HOH HOH . F 5 HOH A 139 539 161 HOH HOH . F 5 HOH A 140 540 131 HOH HOH . F 5 HOH A 141 541 132 HOH HOH . F 5 HOH A 142 542 125 HOH HOH . F 5 HOH A 143 543 144 HOH HOH . F 5 HOH A 144 544 162 HOH HOH . F 5 HOH A 145 545 160 HOH HOH . F 5 HOH A 146 546 134 HOH HOH . F 5 HOH A 147 547 37 HOH HOH . F 5 HOH A 148 548 83 HOH HOH . F 5 HOH A 149 549 145 HOH HOH . F 5 HOH A 150 550 152 HOH HOH . F 5 HOH A 151 551 133 HOH HOH . F 5 HOH A 152 552 124 HOH HOH . F 5 HOH A 153 553 135 HOH HOH . F 5 HOH A 154 554 120 HOH HOH . F 5 HOH A 155 555 136 HOH HOH . F 5 HOH A 156 556 93 HOH HOH . F 5 HOH A 157 557 110 HOH HOH . F 5 HOH A 158 558 153 HOH HOH . F 5 HOH A 159 559 86 HOH HOH . F 5 HOH A 160 560 95 HOH HOH . F 5 HOH A 161 561 98 HOH HOH . F 5 HOH A 162 562 159 HOH HOH . F 5 HOH A 163 563 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 -8.891 1.387 -0.402 1 40.7 ? PA NAD 303 A 1 HETATM 2 O O1A NAD . . . D 3 -9.699 1.11 0.82 1 26.09 ? O1A NAD 303 A 1 HETATM 3 O O2A NAD . . . D 3 -9.059 2.855 -0.89 1 25.92 -1 O2A NAD 303 A 1 HETATM 4 O O5B NAD . . . D 3 -9.499 0.482 -1.702 1 29.12 ? O5B NAD 303 A 1 HETATM 5 C C5B NAD . . . D 3 -9.006 -0.826 -1.914 1 25.89 ? C5B NAD 303 A 1 HETATM 6 C C4B NAD . . . D 3 -10.122 -1.517 -2.778 1 24.62 ? C4B NAD 303 A 1 HETATM 7 O O4B NAD . . . D 3 -10.289 -2.899 -2.212 1 25.05 ? O4B NAD 303 A 1 HETATM 8 C C3B NAD . . . D 3 -11.301 -0.949 -2.595 1 28.76 ? C3B NAD 303 A 1 HETATM 9 O O3B NAD . . . D 3 -11.818 -0.414 -3.841 1 28.42 ? O3B NAD 303 A 1 HETATM 10 C C2B NAD . . . D 3 -12.304 -2.18 -2.016 0 24.68 ? C2B NAD 303 A 1 HETATM 11 O O2B NAD . . . D 3 -13.764 -1.981 -2.297 1 26.99 ? O2B NAD 303 A 1 HETATM 12 C C1B NAD . . . D 3 -11.822 -3.137 -2.608 1 25.79 ? C1B NAD 303 A 1 HETATM 13 N N9A NAD . . . D 3 -12.297 -4.422 -2.04 1 29.91 ? N9A NAD 303 A 1 HETATM 14 C C8A NAD . . . D 3 -12.504 -4.686 -0.75 1 26.87 ? C8A NAD 303 A 1 HETATM 15 N N7A NAD . . . D 3 -12.94 -5.927 -0.655 1 29.46 ? N7A NAD 303 A 1 HETATM 16 C C5A NAD . . . D 3 -13.011 -6.466 -1.884 0 20.94 ? C5A NAD 303 A 1 HETATM 17 C C6A NAD . . . D 3 -13.398 -7.709 -2.422 0.21 18.05 ? C6A NAD 303 A 1 HETATM 18 N N6A NAD . . . D 3 -13.862 -8.799 -1.515 1 18.66 ? N6A NAD 303 A 1 HETATM 19 N N1A NAD . . . D 3 -13.346 -7.9 -3.744 1 21.66 ? N1A NAD 303 A 1 HETATM 20 C C2A NAD . . . D 3 -12.934 -6.921 -4.556 1 15.14 ? C2A NAD 303 A 1 HETATM 21 N N3A NAD . . . D 3 -12.556 -5.729 -4.115 1 22.3 ? N3A NAD 303 A 1 HETATM 22 C C4A NAD . . . D 3 -12.576 -5.498 -2.77 1 24.14 ? C4A NAD 303 A 1 HETATM 23 O O3 NAD . . . D 3 -7.345 0.941 -0.057 0.07 24.85 ? O3 NAD 303 A 1 HETATM 24 P PN NAD . . . D 3 -6.011 1.66 -0.744 1 31.74 ? PN NAD 303 A 1 HETATM 25 O O1N NAD . . . D 3 -6.437 2.03 -2.159 1 18.1 ? O1N NAD 303 A 1 HETATM 26 O O2N NAD . . . D 3 -5.579 2.879 0.151 1 25.69 -1 O2N NAD 303 A 1 HETATM 27 O O5D NAD . . . D 3 -4.679 0.626 -0.784 1 25.34 ? O5D NAD 303 A 1 HETATM 28 C C5D NAD . . . D 3 -4.774 -0.677 -1.294 1 26.7 ? C5D NAD 303 A 1 HETATM 29 C C4D NAD . . . D 3 -3.519 -1.393 -0.752 1 20.2 ? C4D NAD 303 A 1 HETATM 30 O O4D NAD . . . D 3 -2.663 -0.339 0.164 1 21.28 ? O4D NAD 303 A 1 HETATM 31 C C3D NAD . . . D 3 -3.822 -2.318 0.029 1 18.98 ? C3D NAD 303 A 1 HETATM 32 O O3D NAD . . . D 3 -3.017 -3.528 -0.265 1 26.01 ? O3D NAD 303 A 1 HETATM 33 C C2D NAD . . . D 3 -3.436 -1.799 1.586 0.22 17.91 ? C2D NAD 303 A 1 HETATM 34 O O2D NAD . . . D 3 -3.301 -2.905 2.458 1 17.25 ? O2D NAD 303 A 1 HETATM 35 C C1D NAD . . . D 3 -2.297 -1.189 1.367 0.1 16.38 ? C1D NAD 303 A 1 HETATM 36 N N1N NAD . . . D 3 -1.968 -0.281 2.482 1 22.29 ? N1N NAD 303 A 1 HETATM 37 C C2N NAD . . . D 3 -2.788 0.78 2.691 1 21.41 ? C2N NAD 303 A 1 HETATM 38 C C3N NAD . . . D 3 -2.512 1.629 3.744 0.47 15.52 ? C3N NAD 303 A 1 HETATM 39 C C7N NAD . . . D 3 -3.362 2.89 4.082 0.23 12.78 ? C7N NAD 303 A 1 HETATM 40 O O7N NAD . . . D 3 -2.76 3.756 4.706 1 19.8 ? O7N NAD 303 A 1 HETATM 41 N N7N NAD . . . D 3 -4.73 3.017 3.708 0 14.37 ? N7N NAD 303 A 1 HETATM 42 C C4N NAD . . . D 3 -1.407 1.41 4.539 0.23 12.4 ? C4N NAD 303 A 1 HETATM 43 C C5N NAD . . . D 3 -0.59 0.313 4.316 1 12.26 ? C5N NAD 303 A 1 HETATM 44 C C6N NAD . . . D 3 -0.925 -0.526 3.228 0.03 12.54 ? C6N NAD 303 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #