data_9G55
#
_model_server_result.job_id            6NIWPegL34SKz1Q27rwLhw 
_model_server_result.datetime_utc      '2025-08-31 12:52:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9g55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":502}' 
#
_entry.id    9G55 
#
_exptl.entry_id    9G55 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9G55 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9G55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 R N N 
? 2 S N N 
? 2 CA N N 
? 2 DA N N 
? 2 NA N N 
? 2 OA N N 
? 2 YA N N 
? 2 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 234 A ASN 234 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? 
covale ? covale2 B ND2 ASN 234 B ASN 234 1_555 S C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? 
covale ? covale3 C ND2 ASN 234 C ASN 234 1_555 DA C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
covale ? covale4 D ND2 ASN 234 D ASN 234 1_555 OA C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? 
covale ? covale5 E ND2 ASN 234 E ASN 234 1_555 ZA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 385 n n 
C1 O1 NAG sing 386 n n 
C1 O5 NAG sing 387 n n 
C1 H1 NAG sing 388 n n 
C2 C3 NAG sing 389 n n 
C2 N2 NAG sing 390 n n 
C2 H2 NAG sing 391 n n 
C3 C4 NAG sing 392 n n 
C3 O3 NAG sing 393 n n 
C3 H3 NAG sing 394 n n 
C4 C5 NAG sing 395 n n 
C4 O4 NAG sing 396 n n 
C4 H4 NAG sing 397 n n 
C5 C6 NAG sing 398 n n 
C5 O5 NAG sing 399 n n 
C5 H5 NAG sing 400 n n 
C6 O6 NAG sing 401 n n 
C6 H61 NAG sing 402 n n 
C6 H62 NAG sing 403 n n 
C7 C8 NAG sing 404 n n 
C7 N2 NAG sing 405 n n 
C7 O7 NAG doub 406 n n 
C8 H81 NAG sing 407 n n 
C8 H82 NAG sing 408 n n 
C8 H83 NAG sing 409 n n 
N2 HN2 NAG sing 410 n n 
O1 HO1 NAG sing 411 n n 
O3 HO3 NAG sing 412 n n 
O4 HO4 NAG sing 413 n n 
O6 HO6 NAG sing 414 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9G55 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 501 602 NAG NAG . 
G 2 NAG A 1 502 603 NAG NAG . 
H 3 A8Z A 1 503 604 A8Z A8Z . 
I 4 HEX A 1 504 701 HEX HEX . 
J 4 HEX A 1 505 702 HEX HEX . 
K 4 HEX A 1 506 703 HEX HEX . 
L 5 D12 A 1 507 704 D12 D12 . 
M 4 HEX A 1 508 705 HEX HEX . 
N 6 D10 A 1 509 707 D10 D10 . 
O 7 OCT A 1 510 708 OCT OCT . 
P 6 D10 A 1 511 706 D10 D10 . 
Q 6 D10 B 1 501 706 D10 D10 . 
R 2 NAG B 1 502 602 NAG NAG . 
S 2 NAG B 1 503 603 NAG NAG . 
T 3 A8Z B 1 504 604 A8Z A8Z . 
U 4 HEX B 1 505 701 HEX HEX . 
V 4 HEX B 1 506 702 HEX HEX . 
W 4 HEX B 1 507 703 HEX HEX . 
X 5 D12 B 1 508 704 D12 D12 . 
Y 4 HEX B 1 509 705 HEX HEX . 
Z 6 D10 B 1 510 707 D10 D10 . 
AA 7 OCT B 1 511 708 OCT OCT . 
BA 6 D10 C 1 501 706 D10 D10 . 
CA 2 NAG C 1 502 602 NAG NAG . 
DA 2 NAG C 1 503 603 NAG NAG . 
EA 3 A8Z C 1 504 604 A8Z A8Z . 
FA 4 HEX C 1 505 701 HEX HEX . 
GA 4 HEX C 1 506 702 HEX HEX . 
HA 4 HEX C 1 507 703 HEX HEX . 
IA 5 D12 C 1 508 704 D12 D12 . 
JA 4 HEX C 1 509 705 HEX HEX . 
KA 6 D10 C 1 510 707 D10 D10 . 
LA 7 OCT C 1 511 708 OCT OCT . 
MA 6 D10 D 1 501 706 D10 D10 . 
NA 2 NAG D 1 502 602 NAG NAG . 
OA 2 NAG D 1 503 603 NAG NAG . 
PA 3 A8Z D 1 504 604 A8Z A8Z . 
QA 4 HEX D 1 505 701 HEX HEX . 
RA 4 HEX D 1 506 702 HEX HEX . 
SA 4 HEX D 1 507 703 HEX HEX . 
TA 5 D12 D 1 508 704 D12 D12 . 
UA 4 HEX D 1 509 705 HEX HEX . 
VA 6 D10 D 1 510 707 D10 D10 . 
WA 7 OCT D 1 511 708 OCT OCT . 
XA 6 D10 E 1 501 706 D10 D10 . 
YA 2 NAG E 1 502 602 NAG NAG . 
ZA 2 NAG E 1 503 603 NAG NAG . 
AB 3 A8Z E 1 504 604 A8Z A8Z . 
BB 4 HEX E 1 505 701 HEX HEX . 
CB 4 HEX E 1 506 702 HEX HEX . 
DB 4 HEX E 1 507 703 HEX HEX . 
EB 5 D12 E 1 508 704 D12 D12 . 
FB 4 HEX E 1 509 705 HEX HEX . 
GB 6 D10 E 1 510 707 D10 D10 . 
HB 7 OCT E 1 511 708 OCT OCT . 
IB 8 HOH A 1 601 838 HOH HOH . 
IB 8 HOH A 2 602 847 HOH HOH . 
JB 8 HOH B 1 601 838 HOH HOH . 
JB 8 HOH B 2 602 847 HOH HOH . 
KB 8 HOH C 1 601 838 HOH HOH . 
KB 8 HOH C 2 602 847 HOH HOH . 
LB 8 HOH D 1 601 838 HOH HOH . 
LB 8 HOH D 2 602 847 HOH HOH . 
MB 8 HOH E 1 601 838 HOH HOH . 
MB 8 HOH E 2 602 847 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . R 2 162.764 105.867 215.218 1 170.9 ? C1 NAG 502 B 1 
HETATM 2 C C2 NAG . . . R 2 164.112 106.478 215.621 1 170.93 ? C2 NAG 502 B 1 
HETATM 3 C C3 NAG . . . R 2 164.59 105.892 216.948 1 166.75 ? C3 NAG 502 B 1 
HETATM 4 C C4 NAG . . . R 2 163.488 105.976 217.999 1 166.59 ? C4 NAG 502 B 1 
HETATM 5 C C5 NAG . . . R 2 162.199 105.348 217.46 1 167.75 ? C5 NAG 502 B 1 
HETATM 6 C C6 NAG . . . R 2 161.041 105.427 218.434 1 159.93 ? C6 NAG 502 B 1 
HETATM 7 C C7 NAG . . . R 2 165.565 107.291 213.813 1 166.77 ? C7 NAG 502 B 1 
HETATM 8 C C8 NAG . . . R 2 166.601 106.878 212.794 1 160.65 ? C8 NAG 502 B 1 
HETATM 9 N N2 NAG . . . R 2 165.097 106.297 214.588 1 170.81 ? N2 NAG 502 B 1 
HETATM 10 O O3 NAG . . . R 2 165.728 106.603 217.352 1 164.32 ? O3 NAG 502 B 1 
HETATM 11 O O4 NAG . . . R 2 163.947 105.302 219.148 1 167.06 ? O4 NAG 502 B 1 
HETATM 12 O O5 NAG . . . R 2 161.829 105.994 216.26 1 171.81 ? O5 NAG 502 B 1 
HETATM 13 O O6 NAG . . . R 2 159.989 104.595 218.01 1 157.2 ? O6 NAG 502 B 1 
HETATM 14 O O7 NAG . . . R 2 165.19 108.45 213.914 1 164.21 ? O7 NAG 502 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           696 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#