data_9G55 # _model_server_result.job_id G7_4aujNafDPCS7DzyZKMQ _model_server_result.datetime_utc '2025-08-31 09:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 9G55 # _exptl.entry_id 9G55 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 334.493 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tetrahydrodeoxycorticosterone _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G55 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 T N N ? 3 EA N N ? 3 PA N N ? 3 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 234 A ASN 234 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? covale ? covale2 B ND2 ASN 234 B ASN 234 1_555 S C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? covale ? covale3 C ND2 ASN 234 C ASN 234 1_555 DA C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? covale ? covale4 D ND2 ASN 234 D ASN 234 1_555 OA C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? covale ? covale5 E ND2 ASN 234 E ASN 234 1_555 ZA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? # _chem_comp.formula 'C21 H34 O3' _chem_comp.formula_weight 334.493 _chem_comp.id A8Z _chem_comp.mon_nstd_flag . _chem_comp.name Tetrahydrodeoxycorticosterone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 A8Z sing 1 n n C4 C5 A8Z sing 2 n n C3 O2 A8Z sing 3 n n C3 C2 A8Z sing 4 n n C6 C5 A8Z sing 5 n n C6 C7 A8Z sing 6 n n C2 C1 A8Z sing 7 n n C5 C10 A8Z sing 8 n n C19 C10 A8Z sing 9 n n C7 C8 A8Z sing 10 n n C10 C1 A8Z sing 11 n n C10 C9 A8Z sing 12 n n C8 C9 A8Z sing 13 n n C8 C14 A8Z sing 14 n n C9 C11 A8Z sing 15 n n C14 C15 A8Z sing 16 n n C14 C13 A8Z sing 17 n n C11 C12 A8Z sing 18 n n C15 C16 A8Z sing 19 n n C13 C18 A8Z sing 20 n n C13 C12 A8Z sing 21 n n C13 C17 A8Z sing 22 n n C16 C17 A8Z sing 23 n n C17 C20 A8Z sing 24 n n C20 O A8Z doub 25 n n C20 C21 A8Z sing 26 n n C21 O1 A8Z sing 27 n n C2 H11 A8Z sing 28 n n C2 H12 A8Z sing 29 n n C5 H1 A8Z sing 30 n n C4 H14 A8Z sing 31 n n C4 H13 A8Z sing 32 n n C6 H15 A8Z sing 33 n n C6 H16 A8Z sing 34 n n C7 H18 A8Z sing 35 n n C7 H17 A8Z sing 36 n n C8 H2 A8Z sing 37 n n C9 H3 A8Z sing 38 n n C1 H9 A8Z sing 39 n n C1 H10 A8Z sing 40 n n C11 H19 A8Z sing 41 n n C11 H20 A8Z sing 42 n n C12 H21 A8Z sing 43 n n C12 H22 A8Z sing 44 n n C14 H4 A8Z sing 45 n n C15 H23 A8Z sing 46 n n C15 H24 A8Z sing 47 n n C16 H26 A8Z sing 48 n n C16 H25 A8Z sing 49 n n C17 H5 A8Z sing 50 n n C18 H31 A8Z sing 51 n n C18 H30 A8Z sing 52 n n C18 H32 A8Z sing 53 n n C19 H8 A8Z sing 54 n n C19 H6 A8Z sing 55 n n C19 H7 A8Z sing 56 n n C3 H A8Z sing 57 n n O1 H29 A8Z sing 58 n n O2 H33 A8Z sing 59 n n C21 H28 A8Z sing 60 n n C21 H27 A8Z sing 61 n n # _atom_sites.entry_id 9G55 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 501 602 NAG NAG . G 2 NAG A 1 502 603 NAG NAG . H 3 A8Z A 1 503 604 A8Z A8Z . I 4 HEX A 1 504 701 HEX HEX . J 4 HEX A 1 505 702 HEX HEX . K 4 HEX A 1 506 703 HEX HEX . L 5 D12 A 1 507 704 D12 D12 . M 4 HEX A 1 508 705 HEX HEX . N 6 D10 A 1 509 707 D10 D10 . O 7 OCT A 1 510 708 OCT OCT . P 6 D10 A 1 511 706 D10 D10 . Q 6 D10 B 1 501 706 D10 D10 . R 2 NAG B 1 502 602 NAG NAG . S 2 NAG B 1 503 603 NAG NAG . T 3 A8Z B 1 504 604 A8Z A8Z . U 4 HEX B 1 505 701 HEX HEX . V 4 HEX B 1 506 702 HEX HEX . W 4 HEX B 1 507 703 HEX HEX . X 5 D12 B 1 508 704 D12 D12 . Y 4 HEX B 1 509 705 HEX HEX . Z 6 D10 B 1 510 707 D10 D10 . AA 7 OCT B 1 511 708 OCT OCT . BA 6 D10 C 1 501 706 D10 D10 . CA 2 NAG C 1 502 602 NAG NAG . DA 2 NAG C 1 503 603 NAG NAG . EA 3 A8Z C 1 504 604 A8Z A8Z . FA 4 HEX C 1 505 701 HEX HEX . GA 4 HEX C 1 506 702 HEX HEX . HA 4 HEX C 1 507 703 HEX HEX . IA 5 D12 C 1 508 704 D12 D12 . JA 4 HEX C 1 509 705 HEX HEX . KA 6 D10 C 1 510 707 D10 D10 . LA 7 OCT C 1 511 708 OCT OCT . MA 6 D10 D 1 501 706 D10 D10 . NA 2 NAG D 1 502 602 NAG NAG . OA 2 NAG D 1 503 603 NAG NAG . PA 3 A8Z D 1 504 604 A8Z A8Z . QA 4 HEX D 1 505 701 HEX HEX . RA 4 HEX D 1 506 702 HEX HEX . SA 4 HEX D 1 507 703 HEX HEX . TA 5 D12 D 1 508 704 D12 D12 . UA 4 HEX D 1 509 705 HEX HEX . VA 6 D10 D 1 510 707 D10 D10 . WA 7 OCT D 1 511 708 OCT OCT . XA 6 D10 E 1 501 706 D10 D10 . YA 2 NAG E 1 502 602 NAG NAG . ZA 2 NAG E 1 503 603 NAG NAG . AB 3 A8Z E 1 504 604 A8Z A8Z . BB 4 HEX E 1 505 701 HEX HEX . CB 4 HEX E 1 506 702 HEX HEX . DB 4 HEX E 1 507 703 HEX HEX . EB 5 D12 E 1 508 704 D12 D12 . FB 4 HEX E 1 509 705 HEX HEX . GB 6 D10 E 1 510 707 D10 D10 . HB 7 OCT E 1 511 708 OCT OCT . IB 8 HOH A 1 601 838 HOH HOH . IB 8 HOH A 2 602 847 HOH HOH . JB 8 HOH B 1 601 838 HOH HOH . JB 8 HOH B 2 602 847 HOH HOH . KB 8 HOH C 1 601 838 HOH HOH . KB 8 HOH C 2 602 847 HOH HOH . LB 8 HOH D 1 601 838 HOH HOH . LB 8 HOH D 2 602 847 HOH HOH . MB 8 HOH E 1 601 838 HOH HOH . MB 8 HOH E 2 602 847 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 A8Z . . . H 3 132.609 118.441 148.676 1 61.12 ? C2 A8Z 503 A 1 HETATM 2 C C5 A8Z . . . H 3 133.758 115.808 148.179 1 64.11 ? C5 A8Z 503 A 1 HETATM 3 C C4 A8Z . . . H 3 133.381 116.746 147.03 1 67.35 ? C4 A8Z 503 A 1 HETATM 4 C C6 A8Z . . . H 3 133.782 114.356 147.738 1 63.46 ? C6 A8Z 503 A 1 HETATM 5 C C7 A8Z . . . H 3 134.301 113.463 148.857 1 62.69 ? C7 A8Z 503 A 1 HETATM 6 C C8 A8Z . . . H 3 133.482 113.607 150.141 1 63.9 ? C8 A8Z 503 A 1 HETATM 7 C C9 A8Z . . . H 3 133.385 115.077 150.565 1 67.31 ? C9 A8Z 503 A 1 HETATM 8 O O A8Z . . . H 3 133.144 110.545 155.044 1 82.25 ? O A8Z 503 A 1 HETATM 9 C C1 A8Z . . . H 3 133.008 117.49 149.807 1 67.94 ? C1 A8Z 503 A 1 HETATM 10 C C10 A8Z . . . H 3 132.864 116.007 149.425 1 71.45 ? C10 A8Z 503 A 1 HETATM 11 C C11 A8Z . . . H 3 132.621 115.224 151.885 1 67.4 ? C11 A8Z 503 A 1 HETATM 12 C C12 A8Z . . . H 3 133.219 114.377 153.009 1 60.34 ? C12 A8Z 503 A 1 HETATM 13 C C13 A8Z . . . H 3 133.328 112.896 152.623 1 63.77 ? C13 A8Z 503 A 1 HETATM 14 C C14 A8Z . . . H 3 134.109 112.82 151.295 1 63.62 ? C14 A8Z 503 A 1 HETATM 15 C C15 A8Z . . . H 3 134.416 111.322 151.142 1 61.86 ? C15 A8Z 503 A 1 HETATM 16 C C16 A8Z . . . H 3 134.622 110.824 152.592 1 65.54 ? C16 A8Z 503 A 1 HETATM 17 C C17 A8Z . . . H 3 134.256 112.015 153.505 1 65.04 ? C17 A8Z 503 A 1 HETATM 18 C C18 A8Z . . . H 3 131.933 112.261 152.504 1 64.48 ? C18 A8Z 503 A 1 HETATM 19 C C19 A8Z . . . H 3 131.391 115.709 149.095 1 68.86 ? C19 A8Z 503 A 1 HETATM 20 C C20 A8Z . . . H 3 133.697 111.606 154.854 1 72.61 ? C20 A8Z 503 A 1 HETATM 21 C C3 A8Z . . . H 3 133.447 118.202 147.443 1 60.6 ? C3 A8Z 503 A 1 HETATM 22 O O1 A8Z . . . H 3 134.003 111.914 157.226 1 72.69 ? O1 A8Z 503 A 1 HETATM 23 O O2 A8Z . . . H 3 134.797 118.572 147.717 1 53.56 ? O2 A8Z 503 A 1 HETATM 24 C C21 A8Z . . . H 3 133.864 112.573 155.981 1 69.05 ? C21 A8Z 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #