data_9G55
#
_model_server_result.job_id            hXZ06Hr6PS2XLFOi2tkdgA 
_model_server_result.datetime_utc      '2025-08-31 16:24:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9g55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TA","auth_seq_id":508}' 
#
_entry.id    9G55 
#
_exptl.entry_id    9G55 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              170.335 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECANE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9G55 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9G55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 X N N 
? 5 IA N N 
? 5 TA N N 
? 5 EB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 234 A ASN 234 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? 
covale ? covale2 B ND2 ASN 234 B ASN 234 1_555 S C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? 
covale ? covale3 C ND2 ASN 234 C ASN 234 1_555 DA C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
covale ? covale4 D ND2 ASN 234 D ASN 234 1_555 OA C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? 
covale ? covale5 E ND2 ASN 234 E ASN 234 1_555 ZA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
#
_chem_comp.formula           'C12 H26' 
_chem_comp.formula_weight    170.335 
_chem_comp.id                D12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D12 sing 175 n n 
C1 H11 D12 sing 176 n n 
C1 H12 D12 sing 177 n n 
C1 H13 D12 sing 178 n n 
C2 C3 D12 sing 179 n n 
C2 H21 D12 sing 180 n n 
C2 H22 D12 sing 181 n n 
C3 C4 D12 sing 182 n n 
C3 H31 D12 sing 183 n n 
C3 H32 D12 sing 184 n n 
C4 C5 D12 sing 185 n n 
C4 H41 D12 sing 186 n n 
C4 H42 D12 sing 187 n n 
C5 C6 D12 sing 188 n n 
C5 H51 D12 sing 189 n n 
C5 H52 D12 sing 190 n n 
C6 C7 D12 sing 191 n n 
C6 H61 D12 sing 192 n n 
C6 H62 D12 sing 193 n n 
C7 C8 D12 sing 194 n n 
C7 H71 D12 sing 195 n n 
C7 H72 D12 sing 196 n n 
C8 C9 D12 sing 197 n n 
C8 H81 D12 sing 198 n n 
C8 H82 D12 sing 199 n n 
C9 C10 D12 sing 200 n n 
C9 H91 D12 sing 201 n n 
C9 H92 D12 sing 202 n n 
C10 C11 D12 sing 203 n n 
C10 H101 D12 sing 204 n n 
C10 H102 D12 sing 205 n n 
C11 C12 D12 sing 206 n n 
C11 H111 D12 sing 207 n n 
C11 H112 D12 sing 208 n n 
C12 H121 D12 sing 209 n n 
C12 H122 D12 sing 210 n n 
C12 H123 D12 sing 211 n n 
#
_atom_sites.entry_id                     9G55 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 501 602 NAG NAG . 
G 2 NAG A 1 502 603 NAG NAG . 
H 3 A8Z A 1 503 604 A8Z A8Z . 
I 4 HEX A 1 504 701 HEX HEX . 
J 4 HEX A 1 505 702 HEX HEX . 
K 4 HEX A 1 506 703 HEX HEX . 
L 5 D12 A 1 507 704 D12 D12 . 
M 4 HEX A 1 508 705 HEX HEX . 
N 6 D10 A 1 509 707 D10 D10 . 
O 7 OCT A 1 510 708 OCT OCT . 
P 6 D10 A 1 511 706 D10 D10 . 
Q 6 D10 B 1 501 706 D10 D10 . 
R 2 NAG B 1 502 602 NAG NAG . 
S 2 NAG B 1 503 603 NAG NAG . 
T 3 A8Z B 1 504 604 A8Z A8Z . 
U 4 HEX B 1 505 701 HEX HEX . 
V 4 HEX B 1 506 702 HEX HEX . 
W 4 HEX B 1 507 703 HEX HEX . 
X 5 D12 B 1 508 704 D12 D12 . 
Y 4 HEX B 1 509 705 HEX HEX . 
Z 6 D10 B 1 510 707 D10 D10 . 
AA 7 OCT B 1 511 708 OCT OCT . 
BA 6 D10 C 1 501 706 D10 D10 . 
CA 2 NAG C 1 502 602 NAG NAG . 
DA 2 NAG C 1 503 603 NAG NAG . 
EA 3 A8Z C 1 504 604 A8Z A8Z . 
FA 4 HEX C 1 505 701 HEX HEX . 
GA 4 HEX C 1 506 702 HEX HEX . 
HA 4 HEX C 1 507 703 HEX HEX . 
IA 5 D12 C 1 508 704 D12 D12 . 
JA 4 HEX C 1 509 705 HEX HEX . 
KA 6 D10 C 1 510 707 D10 D10 . 
LA 7 OCT C 1 511 708 OCT OCT . 
MA 6 D10 D 1 501 706 D10 D10 . 
NA 2 NAG D 1 502 602 NAG NAG . 
OA 2 NAG D 1 503 603 NAG NAG . 
PA 3 A8Z D 1 504 604 A8Z A8Z . 
QA 4 HEX D 1 505 701 HEX HEX . 
RA 4 HEX D 1 506 702 HEX HEX . 
SA 4 HEX D 1 507 703 HEX HEX . 
TA 5 D12 D 1 508 704 D12 D12 . 
UA 4 HEX D 1 509 705 HEX HEX . 
VA 6 D10 D 1 510 707 D10 D10 . 
WA 7 OCT D 1 511 708 OCT OCT . 
XA 6 D10 E 1 501 706 D10 D10 . 
YA 2 NAG E 1 502 602 NAG NAG . 
ZA 2 NAG E 1 503 603 NAG NAG . 
AB 3 A8Z E 1 504 604 A8Z A8Z . 
BB 4 HEX E 1 505 701 HEX HEX . 
CB 4 HEX E 1 506 702 HEX HEX . 
DB 4 HEX E 1 507 703 HEX HEX . 
EB 5 D12 E 1 508 704 D12 D12 . 
FB 4 HEX E 1 509 705 HEX HEX . 
GB 6 D10 E 1 510 707 D10 D10 . 
HB 7 OCT E 1 511 708 OCT OCT . 
IB 8 HOH A 1 601 838 HOH HOH . 
IB 8 HOH A 2 602 847 HOH HOH . 
JB 8 HOH B 1 601 838 HOH HOH . 
JB 8 HOH B 2 602 847 HOH HOH . 
KB 8 HOH C 1 601 838 HOH HOH . 
KB 8 HOH C 2 602 847 HOH HOH . 
LB 8 HOH D 1 601 838 HOH HOH . 
LB 8 HOH D 2 602 847 HOH HOH . 
MB 8 HOH E 1 601 838 HOH HOH . 
MB 8 HOH E 2 602 847 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D12 . . . TA 5 124.535 173.598 150.528 1 67.09 ? C1 D12 508 D 1 
HETATM 2 C C2 D12 . . . TA 5 125.221 172.261 150.263 1 68.15 ? C2 D12 508 D 1 
HETATM 3 C C3 D12 . . . TA 5 125.663 172.195 148.803 1 77.91 ? C3 D12 508 D 1 
HETATM 4 C C4 D12 . . . TA 5 126.349 170.857 148.537 1 77.51 ? C4 D12 508 D 1 
HETATM 5 C C5 D12 . . . TA 5 126.807 170.794 147.082 1 78.15 ? C5 D12 508 D 1 
HETATM 6 C C6 D12 . . . TA 5 127.476 169.45 146.807 1 67.8 ? C6 D12 508 D 1 
HETATM 7 C C7 D12 . . . TA 5 127.902 169.382 145.343 1 74.16 ? C7 D12 508 D 1 
HETATM 8 C C8 D12 . . . TA 5 128.596 168.047 145.081 1 78.68 ? C8 D12 508 D 1 
HETATM 9 C C9 D12 . . . TA 5 129.029 167.963 143.619 1 72.61 ? C9 D12 508 D 1 
HETATM 10 C C10 D12 . . . TA 5 129.701 166.617 143.358 1 58.31 ? C10 D12 508 D 1 
HETATM 11 C C11 D12 . . . TA 5 130.145 166.547 141.9 1 61.36 ? C11 D12 508 D 1 
HETATM 12 C C12 D12 . . . TA 5 130.819 165.205 141.633 1 45.99 ? C12 D12 508 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#