data_9G5A # _model_server_result.job_id kjvNr2dXIpSm4zR01Ucrhw _model_server_result.datetime_utc '2025-08-03 21:38:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 9G5A # _exptl.entry_id 9G5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G5A _cell.length_a 55.37 _cell.length_b 137.5 _cell.length_c 143.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 251 B TYR 276 1_555 A N YCM 252 B YCM 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C YCM 252 B YCM 277 1_555 A N VAL 253 B VAL 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id GN1 _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE;N-ACETYL-D-GLUCOSAMINE-1-PHOSPHATE;N-acetyl-1-O-phosphono-alpha-D-glucosamine;2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucose;2-acetamido-2-deoxy-1-O-phosphono-D-glucose;2-acetamido-2-deoxy-1-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GN1 sing 143 n n C1 O5 GN1 sing 144 n n C1 C2 GN1 sing 145 n n C1 H1 GN1 sing 146 n n OP1 P GN1 sing 147 n n OP1 HOP1 GN1 sing 148 n n P OP3 GN1 doub 149 n n P OP2 GN1 sing 150 n n P O1 GN1 sing 151 n n OP2 HOP2 GN1 sing 152 n n C2 C3 GN1 sing 153 n n C2 N2 GN1 sing 154 n n C2 H2 GN1 sing 155 n n C3 C4 GN1 sing 156 n n C3 O3 GN1 sing 157 n n C3 H3 GN1 sing 158 n n C4 C5 GN1 sing 159 n n C4 O4 GN1 sing 160 n n C4 H4 GN1 sing 161 n n C5 C6 GN1 sing 162 n n C5 O5 GN1 sing 163 n n C5 H5 GN1 sing 164 n n C6 O6 GN1 sing 165 n n C6 H61 GN1 sing 166 n n C6 H62 GN1 sing 167 n n C8 C7 GN1 sing 168 n n C8 H81 GN1 sing 169 n n C8 H82 GN1 sing 170 n n C8 H83 GN1 sing 171 n n O3 HO3 GN1 sing 172 n n O4 HO4 GN1 sing 173 n n N2 C7 GN1 sing 174 n n N2 HN2 GN1 sing 175 n n C7 O7 GN1 doub 176 n n O6 HO6 GN1 sing 177 n n # _pdbx_chem_comp_identifier.comp_id GN1 _pdbx_chem_comp_identifier.identifier a-D-Glcp1PO3NAc _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 9G5A _atom_sites.fract_transf_matrix[1][1] 0.01806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1IHU B 1 601 601 A1IHU DRG . D 4 GN1 B 1 602 602 GN1 GN1 . E 3 A1IHU B 1 603 603 A1IHU DRG . F 3 A1IHU B 1 604 604 A1IHU DRG . G 5 HOH B 1 701 40 HOH HOH . G 5 HOH B 2 702 62 HOH HOH . G 5 HOH B 3 703 76 HOH HOH . G 5 HOH B 4 704 48 HOH HOH . G 5 HOH B 5 705 54 HOH HOH . G 5 HOH B 6 706 56 HOH HOH . G 5 HOH B 7 707 78 HOH HOH . G 5 HOH B 8 708 94 HOH HOH . G 5 HOH B 9 709 63 HOH HOH . G 5 HOH B 10 710 68 HOH HOH . G 5 HOH B 11 711 60 HOH HOH . G 5 HOH B 12 712 96 HOH HOH . G 5 HOH B 13 713 53 HOH HOH . G 5 HOH B 14 714 81 HOH HOH . G 5 HOH B 15 715 90 HOH HOH . G 5 HOH B 16 716 86 HOH HOH . G 5 HOH B 17 717 44 HOH HOH . G 5 HOH B 18 718 93 HOH HOH . G 5 HOH B 19 719 55 HOH HOH . G 5 HOH B 20 720 74 HOH HOH . G 5 HOH B 21 721 82 HOH HOH . G 5 HOH B 22 722 50 HOH HOH . G 5 HOH B 23 723 36 HOH HOH . G 5 HOH B 24 724 43 HOH HOH . G 5 HOH B 25 725 39 HOH HOH . G 5 HOH B 26 726 77 HOH HOH . G 5 HOH B 27 727 75 HOH HOH . G 5 HOH B 28 728 85 HOH HOH . G 5 HOH B 29 729 88 HOH HOH . G 5 HOH B 30 730 87 HOH HOH . G 5 HOH B 31 731 22 HOH HOH . G 5 HOH B 32 732 72 HOH HOH . G 5 HOH B 33 733 65 HOH HOH . G 5 HOH B 34 734 69 HOH HOH . G 5 HOH B 35 735 37 HOH HOH . G 5 HOH B 36 736 79 HOH HOH . G 5 HOH B 37 737 45 HOH HOH . G 5 HOH B 38 738 92 HOH HOH . G 5 HOH B 39 739 46 HOH HOH . G 5 HOH B 40 740 73 HOH HOH . G 5 HOH B 41 741 49 HOH HOH . G 5 HOH B 42 742 57 HOH HOH . G 5 HOH B 43 743 66 HOH HOH . G 5 HOH B 44 744 83 HOH HOH . G 5 HOH B 45 745 59 HOH HOH . G 5 HOH B 46 746 80 HOH HOH . G 5 HOH B 47 747 41 HOH HOH . G 5 HOH B 48 748 51 HOH HOH . G 5 HOH B 49 749 47 HOH HOH . G 5 HOH B 50 750 91 HOH HOH . G 5 HOH B 51 751 67 HOH HOH . G 5 HOH B 52 752 70 HOH HOH . G 5 HOH B 53 753 95 HOH HOH . G 5 HOH B 54 754 21 HOH HOH . G 5 HOH B 55 755 42 HOH HOH . G 5 HOH B 56 756 64 HOH HOH . G 5 HOH B 57 757 52 HOH HOH . G 5 HOH B 58 758 84 HOH HOH . G 5 HOH B 59 759 38 HOH HOH . G 5 HOH B 60 760 61 HOH HOH . G 5 HOH B 61 761 58 HOH HOH . G 5 HOH B 62 762 71 HOH HOH . G 5 HOH B 63 763 89 HOH HOH . H 5 HOH A 1 601 3 HOH HOH . H 5 HOH A 2 602 19 HOH HOH . H 5 HOH A 3 603 16 HOH HOH . H 5 HOH A 4 604 23 HOH HOH . H 5 HOH A 5 605 1 HOH HOH . H 5 HOH A 6 606 5 HOH HOH . H 5 HOH A 7 607 8 HOH HOH . H 5 HOH A 8 608 24 HOH HOH . H 5 HOH A 9 609 4 HOH HOH . H 5 HOH A 10 610 29 HOH HOH . H 5 HOH A 11 611 2 HOH HOH . H 5 HOH A 12 612 15 HOH HOH . H 5 HOH A 13 613 14 HOH HOH . H 5 HOH A 14 614 10 HOH HOH . H 5 HOH A 15 615 7 HOH HOH . H 5 HOH A 16 616 31 HOH HOH . H 5 HOH A 17 617 6 HOH HOH . H 5 HOH A 18 618 20 HOH HOH . H 5 HOH A 19 619 17 HOH HOH . H 5 HOH A 20 620 12 HOH HOH . H 5 HOH A 21 621 33 HOH HOH . H 5 HOH A 22 622 18 HOH HOH . H 5 HOH A 23 623 34 HOH HOH . H 5 HOH A 24 624 32 HOH HOH . H 5 HOH A 25 625 11 HOH HOH . H 5 HOH A 26 626 30 HOH HOH . H 5 HOH A 27 627 9 HOH HOH . H 5 HOH A 28 628 25 HOH HOH . H 5 HOH A 29 629 27 HOH HOH . H 5 HOH A 30 630 35 HOH HOH . H 5 HOH A 31 631 26 HOH HOH . H 5 HOH A 32 632 13 HOH HOH . H 5 HOH A 33 633 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GN1 . . . D 4 -4.816 8.291 3.872 1 40.87 ? C1 GN1 602 B 1 HETATM 2 O OP1 GN1 . . . D 4 -6.227 6.432 1.228 1 40.49 ? OP1 GN1 602 B 1 HETATM 3 P P GN1 . . . D 4 -5.468 6.064 2.535 1 45.61 ? P GN1 602 B 1 HETATM 4 O OP2 GN1 . . . D 4 -4.017 6.004 2.262 1 39.9 ? OP2 GN1 602 B 1 HETATM 5 O OP3 GN1 . . . D 4 -5.988 4.81 3.2 1 51.51 ? OP3 GN1 602 B 1 HETATM 6 C C2 GN1 . . . D 4 -4.866 8.608 5.376 1 38 ? C2 GN1 602 B 1 HETATM 7 C C3 GN1 . . . D 4 -6.268 9.106 5.716 1 34.89 ? C3 GN1 602 B 1 HETATM 8 C C4 GN1 . . . D 4 -6.522 10.359 4.878 1 35.33 ? C4 GN1 602 B 1 HETATM 9 C C5 GN1 . . . D 4 -6.415 10.023 3.393 1 37.05 ? C5 GN1 602 B 1 HETATM 10 C C6 GN1 . . . D 4 -6.58 11.257 2.512 1 30.56 ? C6 GN1 602 B 1 HETATM 11 C C8 GN1 . . . D 4 -2.692 6.241 7.386 1 44.91 ? C8 GN1 602 B 1 HETATM 12 O O1 GN1 . . . D 4 -5.721 7.257 3.578 1 40.32 ? O1 GN1 602 B 1 HETATM 13 O O3 GN1 . . . D 4 -6.435 9.392 7.085 1 34.75 ? O3 GN1 602 B 1 HETATM 14 O O4 GN1 . . . D 4 -7.817 10.876 5.174 1 35.78 ? O4 GN1 602 B 1 HETATM 15 O O5 GN1 . . . D 4 -5.144 9.406 3.059 1 37.28 ? O5 GN1 602 B 1 HETATM 16 N N2 GN1 . . . D 4 -4.369 7.56 6.255 1 38.12 ? N2 GN1 602 B 1 HETATM 17 C C7 GN1 . . . D 4 -3.075 7.46 6.597 1 38.42 ? C7 GN1 602 B 1 HETATM 18 O O6 GN1 . . . D 4 -6.51 10.881 1.116 1 35.4 ? O6 GN1 602 B 1 HETATM 19 O O7 GN1 . . . D 4 -2.233 8.292 6.257 1 38.99 ? O7 GN1 602 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #