data_9G5Q
#
_model_server_result.job_id            9j1gnIV6c-RJbcJfmCUGrg 
_model_server_result.datetime_utc      '2025-08-31 09:56:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9g5q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":602}' 
#
_entry.id    9G5Q 
#
_exptl.entry_id    9G5Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9G5Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9G5Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 R N N 
? 3 S N N 
? 3 CA N N 
? 3 DA N N 
? 3 NA N N 
? 3 OA N N 
? 3 BB N N 
? 3 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 234 A ASN 234 1_555 H C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale2 B ND2 ASN 234 B ASN 234 1_555 S C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale3 C ND2 ASN 234 C ASN 234 1_555 DA C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale4 D ND2 ASN 234 D ASN 234 1_555 OA C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
covale ? covale5 E ND2 ASN 234 E ASN 234 1_555 CB C1 NAG . E NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 268 n n 
C1 O1 NAG sing 269 n n 
C1 O5 NAG sing 270 n n 
C1 H1 NAG sing 271 n n 
C2 C3 NAG sing 272 n n 
C2 N2 NAG sing 273 n n 
C2 H2 NAG sing 274 n n 
C3 C4 NAG sing 275 n n 
C3 O3 NAG sing 276 n n 
C3 H3 NAG sing 277 n n 
C4 C5 NAG sing 278 n n 
C4 O4 NAG sing 279 n n 
C4 H4 NAG sing 280 n n 
C5 C6 NAG sing 281 n n 
C5 O5 NAG sing 282 n n 
C5 H5 NAG sing 283 n n 
C6 O6 NAG sing 284 n n 
C6 H61 NAG sing 285 n n 
C6 H62 NAG sing 286 n n 
C7 C8 NAG sing 287 n n 
C7 N2 NAG sing 288 n n 
C7 O7 NAG doub 289 n n 
C8 H81 NAG sing 290 n n 
C8 H82 NAG sing 291 n n 
C8 H83 NAG sing 292 n n 
N2 HN2 NAG sing 293 n n 
O1 HO1 NAG sing 294 n n 
O3 HO3 NAG sing 295 n n 
O4 HO4 NAG sing 296 n n 
O6 HO6 NAG sing 297 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9G5Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 A1IIN A 1 601 601 A1IIN MUS . 
G 3 NAG A 1 602 602 NAG NAG . 
H 3 NAG A 1 603 603 NAG NAG . 
I 4 OCT A 1 604 703 OCT OCT . 
J 5 HEX A 1 605 704 HEX HEX . 
K 5 HEX A 1 606 706 HEX HEX . 
L 4 OCT A 1 607 707 OCT OCT . 
M 5 HEX A 1 608 708 HEX HEX . 
N 4 OCT A 1 609 701 OCT OCT . 
O 4 OCT A 1 610 702 OCT OCT . 
P 4 OCT A 1 611 705 OCT OCT . 
Q 2 A1IIN B 1 601 601 A1IIN MUS . 
R 3 NAG B 1 602 602 NAG NAG . 
S 3 NAG B 1 603 603 NAG NAG . 
T 4 OCT B 1 604 703 OCT OCT . 
U 5 HEX B 1 605 704 HEX HEX . 
V 5 HEX B 1 606 706 HEX HEX . 
W 4 OCT B 1 607 707 OCT OCT . 
X 5 HEX B 1 608 708 HEX HEX . 
Y 4 OCT B 1 609 701 OCT OCT . 
Z 4 OCT B 1 610 702 OCT OCT . 
AA 4 OCT B 1 611 705 OCT OCT . 
BA 2 A1IIN C 1 601 601 A1IIN MUS . 
CA 3 NAG C 1 602 602 NAG NAG . 
DA 3 NAG C 1 603 603 NAG NAG . 
EA 4 OCT C 1 604 703 OCT OCT . 
FA 5 HEX C 1 605 704 HEX HEX . 
GA 5 HEX C 1 606 706 HEX HEX . 
HA 4 OCT C 1 607 707 OCT OCT . 
IA 5 HEX C 1 608 708 HEX HEX . 
JA 4 OCT C 1 609 701 OCT OCT . 
KA 4 OCT C 1 610 702 OCT OCT . 
LA 4 OCT C 1 611 705 OCT OCT . 
MA 2 A1IIN D 1 601 601 A1IIN MUS . 
NA 3 NAG D 1 602 602 NAG NAG . 
OA 3 NAG D 1 603 603 NAG NAG . 
PA 4 OCT D 1 604 703 OCT OCT . 
QA 5 HEX D 1 605 704 HEX HEX . 
RA 5 HEX D 1 606 706 HEX HEX . 
SA 4 OCT D 1 607 707 OCT OCT . 
TA 5 HEX D 1 608 708 HEX HEX . 
UA 4 OCT D 1 609 701 OCT OCT . 
VA 4 OCT D 1 610 702 OCT OCT . 
WA 4 OCT D 1 611 705 OCT OCT . 
XA 4 OCT E 1 701 701 OCT OCT . 
YA 4 OCT E 1 702 702 OCT OCT . 
ZA 4 OCT E 1 703 705 OCT OCT . 
AB 2 A1IIN E 1 704 601 A1IIN MUS . 
BB 3 NAG E 1 705 602 NAG NAG . 
CB 3 NAG E 1 706 603 NAG NAG . 
DB 4 OCT E 1 707 703 OCT OCT . 
EB 5 HEX E 1 708 704 HEX HEX . 
FB 5 HEX E 1 709 706 HEX HEX . 
GB 4 OCT E 1 710 707 OCT OCT . 
HB 5 HEX E 1 711 708 HEX HEX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . R 3 176.636 160.018 213.171 1 97.85 ? C1 NAG 602 B 1 
HETATM 2 C C2 NAG . . . R 3 176.728 161.541 213.314 1 98.11 ? C2 NAG 602 B 1 
HETATM 3 C C3 NAG . . . R 3 177.693 161.922 214.439 1 95.17 ? C3 NAG 602 B 1 
HETATM 4 C C4 NAG . . . R 3 177.901 160.762 215.408 1 95.14 ? C4 NAG 602 B 1 
HETATM 5 C C5 NAG . . . R 3 178.47 159.559 214.64 1 99.05 ? C5 NAG 602 B 1 
HETATM 6 C C6 NAG . . . R 3 178.29 158.231 215.344 1 97.53 ? C6 NAG 602 B 1 
HETATM 7 C C7 NAG . . . R 3 176.574 163.221 211.514 1 88.25 ? C7 NAG 602 B 1 
HETATM 8 C C8 NAG . . . R 3 177.182 163.662 210.206 1 82.81 ? C8 NAG 602 B 1 
HETATM 9 N N2 NAG . . . R 3 177.145 162.136 212.071 1 94.84 ? N2 NAG 602 B 1 
HETATM 10 O O3 NAG . . . R 3 177.184 163.06 215.083 1 93.07 ? O3 NAG 602 B 1 
HETATM 11 O O4 NAG . . . R 3 178.784 161.206 216.413 1 96.72 ? O4 NAG 602 B 1 
HETATM 12 O O5 NAG . . . R 3 177.92 159.465 213.335 1 101.65 ? O5 NAG 602 B 1 
HETATM 13 O O6 NAG . . . R 3 179.463 157.466 215.207 1 91.3 ? O6 NAG 602 B 1 
HETATM 14 O O7 NAG . . . R 3 175.631 163.817 212.013 1 85.84 ? O7 NAG 602 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           472 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#