data_9G5Q
#
_model_server_result.job_id            g51XkwGdPGwGsptVzCBeDQ 
_model_server_result.datetime_utc      '2025-08-31 09:58:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9g5q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"LA","auth_seq_id":611}' 
#
_entry.id    9G5Q 
#
_exptl.entry_id    9G5Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              114.229 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OCTANE 
_entity.pdbx_number_of_molecules    25 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9G5Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9G5Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 L N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 T N N 
? 4 W N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 EA N N 
? 4 HA N N 
? 4 JA N N 
? 4 KA N N 
? 4 LA N N 
? 4 PA N N 
? 4 SA N N 
? 4 UA N N 
? 4 VA N N 
? 4 WA N N 
? 4 XA N N 
? 4 YA N N 
? 4 ZA N N 
? 4 DB N N 
? 4 GB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 234 A ASN 234 1_555 H C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale2 B ND2 ASN 234 B ASN 234 1_555 S C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale3 C ND2 ASN 234 C ASN 234 1_555 DA C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale4 D ND2 ASN 234 D ASN 234 1_555 OA C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
covale ? covale5 E ND2 ASN 234 E ASN 234 1_555 CB C1 NAG . E NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
#
_chem_comp.formula           'C8 H18' 
_chem_comp.formula_weight    114.229 
_chem_comp.id                OCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OCT sing 298 n n 
C1 H11 OCT sing 299 n n 
C1 H12 OCT sing 300 n n 
C1 H13 OCT sing 301 n n 
C2 C3 OCT sing 302 n n 
C2 H21 OCT sing 303 n n 
C2 H22 OCT sing 304 n n 
C3 C4 OCT sing 305 n n 
C3 H31 OCT sing 306 n n 
C3 H32 OCT sing 307 n n 
C4 C5 OCT sing 308 n n 
C4 H41 OCT sing 309 n n 
C4 H42 OCT sing 310 n n 
C5 C6 OCT sing 311 n n 
C5 H51 OCT sing 312 n n 
C5 H52 OCT sing 313 n n 
C6 C7 OCT sing 314 n n 
C6 H61 OCT sing 315 n n 
C6 H62 OCT sing 316 n n 
C7 C8 OCT sing 317 n n 
C7 H71 OCT sing 318 n n 
C7 H72 OCT sing 319 n n 
C8 H81 OCT sing 320 n n 
C8 H82 OCT sing 321 n n 
C8 H83 OCT sing 322 n n 
#
_atom_sites.entry_id                     9G5Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 A1IIN A 1 601 601 A1IIN MUS . 
G 3 NAG A 1 602 602 NAG NAG . 
H 3 NAG A 1 603 603 NAG NAG . 
I 4 OCT A 1 604 703 OCT OCT . 
J 5 HEX A 1 605 704 HEX HEX . 
K 5 HEX A 1 606 706 HEX HEX . 
L 4 OCT A 1 607 707 OCT OCT . 
M 5 HEX A 1 608 708 HEX HEX . 
N 4 OCT A 1 609 701 OCT OCT . 
O 4 OCT A 1 610 702 OCT OCT . 
P 4 OCT A 1 611 705 OCT OCT . 
Q 2 A1IIN B 1 601 601 A1IIN MUS . 
R 3 NAG B 1 602 602 NAG NAG . 
S 3 NAG B 1 603 603 NAG NAG . 
T 4 OCT B 1 604 703 OCT OCT . 
U 5 HEX B 1 605 704 HEX HEX . 
V 5 HEX B 1 606 706 HEX HEX . 
W 4 OCT B 1 607 707 OCT OCT . 
X 5 HEX B 1 608 708 HEX HEX . 
Y 4 OCT B 1 609 701 OCT OCT . 
Z 4 OCT B 1 610 702 OCT OCT . 
AA 4 OCT B 1 611 705 OCT OCT . 
BA 2 A1IIN C 1 601 601 A1IIN MUS . 
CA 3 NAG C 1 602 602 NAG NAG . 
DA 3 NAG C 1 603 603 NAG NAG . 
EA 4 OCT C 1 604 703 OCT OCT . 
FA 5 HEX C 1 605 704 HEX HEX . 
GA 5 HEX C 1 606 706 HEX HEX . 
HA 4 OCT C 1 607 707 OCT OCT . 
IA 5 HEX C 1 608 708 HEX HEX . 
JA 4 OCT C 1 609 701 OCT OCT . 
KA 4 OCT C 1 610 702 OCT OCT . 
LA 4 OCT C 1 611 705 OCT OCT . 
MA 2 A1IIN D 1 601 601 A1IIN MUS . 
NA 3 NAG D 1 602 602 NAG NAG . 
OA 3 NAG D 1 603 603 NAG NAG . 
PA 4 OCT D 1 604 703 OCT OCT . 
QA 5 HEX D 1 605 704 HEX HEX . 
RA 5 HEX D 1 606 706 HEX HEX . 
SA 4 OCT D 1 607 707 OCT OCT . 
TA 5 HEX D 1 608 708 HEX HEX . 
UA 4 OCT D 1 609 701 OCT OCT . 
VA 4 OCT D 1 610 702 OCT OCT . 
WA 4 OCT D 1 611 705 OCT OCT . 
XA 4 OCT E 1 701 701 OCT OCT . 
YA 4 OCT E 1 702 702 OCT OCT . 
ZA 4 OCT E 1 703 705 OCT OCT . 
AB 2 A1IIN E 1 704 601 A1IIN MUS . 
BB 3 NAG E 1 705 602 NAG NAG . 
CB 3 NAG E 1 706 603 NAG NAG . 
DB 4 OCT E 1 707 703 OCT OCT . 
EB 5 HEX E 1 708 704 HEX HEX . 
FB 5 HEX E 1 709 706 HEX HEX . 
GB 4 OCT E 1 710 707 OCT OCT . 
HB 5 HEX E 1 711 708 HEX HEX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OCT . . . LA 4 113.056 151.873 154.342 1 4.17 ? C1 OCT 611 C 1 
HETATM 2 C C2 OCT . . . LA 4 113.31 153.119 153.496 1 7.2 ? C2 OCT 611 C 1 
HETATM 3 C C3 OCT . . . LA 4 113.673 152.701 152.073 1 0 ? C3 OCT 611 C 1 
HETATM 4 C C4 OCT . . . LA 4 113.971 153.944 151.238 1 3.02 ? C4 OCT 611 C 1 
HETATM 5 C C5 OCT . . . LA 4 114.212 153.535 149.787 1 1.47 ? C5 OCT 611 C 1 
HETATM 6 C C6 OCT . . . LA 4 114.485 154.78 148.947 1 0.92 ? C6 OCT 611 C 1 
HETATM 7 C C7 OCT . . . LA 4 114.714 154.374 147.493 1 1.86 ? C7 OCT 611 C 1 
HETATM 8 C C8 OCT . . . LA 4 115.026 155.618 146.665 1 3.45 ? C8 OCT 611 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#