data_9G6E # _model_server_result.job_id okubyK0NtqHp3aNdzPYbNg _model_server_result.datetime_utc '2025-08-31 11:56:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":904}' # _entry.id 9G6E # _exptl.entry_id 9G6E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G6E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 R N N ? 5 S N N ? 5 T N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG E 1 NAG 3 n E NAG 2 E 2 NAG E 2 NAG 3 n E BMA 3 E 3 BMA E 3 BMA 3 n E MAN 4 E 4 MAN E 4 MAN 3 n E MAN 5 E 5 MAN E 5 MAN 3 n F NAG 1 H 1 NAG H 1 NAG 3 n F NAG 2 H 2 NAG H 2 NAG 3 n F BMA 3 H 3 BMA H 3 BMA 3 n F MAN 4 H 4 MAN H 4 MAN 3 n F MAN 5 H 5 MAN H 5 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 438 A CYS 438 1_555 A SG CYS 454 A CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 84 B CYS 84 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 112 B CYS 112 1_555 B SG CYS 171 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 174 B CYS 174 1_555 B SG CYS 255 B CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 199 B CYS 199 1_555 B SG CYS 224 B CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 221 B CYS 221 1_555 B SG CYS 275 B CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 C SG CYS 438 C CYS 438 1_555 C SG CYS 454 C CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 D SG CYS 101 D CYS 101 1_555 D SG CYS 115 D CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 D SG CYS 112 D CYS 112 1_555 D SG CYS 171 D CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 D SG CYS 174 D CYS 174 1_555 D SG CYS 255 D CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 D SG CYS 199 D CYS 199 1_555 D SG CYS 224 D CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 D SG CYS 221 D CYS 221 1_555 D SG CYS 275 D CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 F O4 NAG . H NAG 1 1_555 F C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 F O4 NAG . H NAG 2 1_555 F C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 F O3 BMA . H BMA 3 1_555 F C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 F O6 BMA . H BMA 3 1_555 F C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 452 n n CBA CAB Y01 sing 453 n n CBA CAN Y01 sing 454 n n CAN CAJ Y01 sing 455 n n CAJ CAO Y01 sing 456 n n CAO CBB Y01 sing 457 n n CBB CAC Y01 sing 458 n n CBB CBE Y01 sing 459 n n CBE CAP Y01 sing 460 n n CBE CBI Y01 sing 461 n n CAP CAQ Y01 sing 462 n n CAQ CBG Y01 sing 463 n n CBG CBI Y01 sing 464 n n CBG CBD Y01 sing 465 n n CBI CAE Y01 sing 466 n n CBI CAU Y01 sing 467 n n CAU CAS Y01 sing 468 n n CAS CBF Y01 sing 469 n n CBF CBD Y01 sing 470 n n CBF CBH Y01 sing 471 n n CBD CAK Y01 sing 472 n n CAK CAI Y01 sing 473 n n CAI CAZ Y01 doub 474 n n CAZ CAV Y01 sing 475 n n CAZ CBH Y01 sing 476 n n CAV CBC Y01 sing 477 n n CBH CAD Y01 sing 478 n n CBH CAT Y01 sing 479 n n CAT CAR Y01 sing 480 n n CAR CBC Y01 sing 481 n n CBC OAW Y01 sing 482 n n OAW CAY Y01 sing 483 n n CAY OAG Y01 doub 484 n n CAY CAM Y01 sing 485 n n CAM CAL Y01 sing 486 n n CAL CAX Y01 sing 487 n n CAX OAH Y01 sing 488 n n CAX OAF Y01 doub 489 n n CAA HAA1 Y01 sing 490 n n CAA HAA2 Y01 sing 491 n n CAA HAA3 Y01 sing 492 n n CBA HBA Y01 sing 493 n n CAB HAB1 Y01 sing 494 n n CAB HAB2 Y01 sing 495 n n CAB HAB3 Y01 sing 496 n n CAN HAN1 Y01 sing 497 n n CAN HAN2 Y01 sing 498 n n CAJ HAJ1 Y01 sing 499 n n CAJ HAJ2 Y01 sing 500 n n CAO HAO1 Y01 sing 501 n n CAO HAO2 Y01 sing 502 n n CBB HBB Y01 sing 503 n n CAC HAC1 Y01 sing 504 n n CAC HAC2 Y01 sing 505 n n CAC HAC3 Y01 sing 506 n n CBE HBE Y01 sing 507 n n CAP HAP1 Y01 sing 508 n n CAP HAP2 Y01 sing 509 n n CAQ HAQ1 Y01 sing 510 n n CAQ HAQ2 Y01 sing 511 n n CBG HBG Y01 sing 512 n n CBD HBD Y01 sing 513 n n CAE HAE1 Y01 sing 514 n n CAE HAE2 Y01 sing 515 n n CAE HAE3 Y01 sing 516 n n CAU HAU1 Y01 sing 517 n n CAU HAU2 Y01 sing 518 n n CAS HAS1 Y01 sing 519 n n CAS HAS2 Y01 sing 520 n n CBF HBF Y01 sing 521 n n CAK HAK1 Y01 sing 522 n n CAK HAK2 Y01 sing 523 n n CAI HAI Y01 sing 524 n n CAV HAV1 Y01 sing 525 n n CAV HAV2 Y01 sing 526 n n CBC HBC Y01 sing 527 n n CAD HAD1 Y01 sing 528 n n CAD HAD2 Y01 sing 529 n n CAD HAD3 Y01 sing 530 n n CAT HAT1 Y01 sing 531 n n CAT HAT2 Y01 sing 532 n n CAR HAR1 Y01 sing 533 n n CAR HAR2 Y01 sing 534 n n CAM HAM1 Y01 sing 535 n n CAM HAM2 Y01 sing 536 n n CAL HAL1 Y01 sing 537 n n CAL HAL2 Y01 sing 538 n n OAH HAH Y01 sing 539 n n # _atom_sites.entry_id 9G6E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CL A 1 901 903 CL CL . H 4 CL A 1 902 904 CL CL . I 4 CL A 1 903 905 CL CL . J 5 Y01 A 1 904 910 Y01 Y01 . K 5 Y01 A 1 905 912 Y01 Y01 . L 5 Y01 A 1 906 909 Y01 Y01 . M 5 Y01 B 1 401 908 Y01 Y01 . N 5 Y01 C 1 901 909 Y01 Y01 . O 4 CL C 1 902 903 CL CL . P 4 CL C 1 903 904 CL CL . Q 4 CL C 1 904 905 CL CL . R 5 Y01 C 1 905 908 Y01 Y01 . S 5 Y01 C 1 906 910 Y01 Y01 . T 5 Y01 C 1 907 912 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 5 217.887 155.773 181.842 1 128.22 ? CAA Y01 904 A 1 HETATM 2 C CBA Y01 . . . J 5 218.033 154.972 180.554 1 128.28 ? CBA Y01 904 A 1 HETATM 3 C CAB Y01 . . . J 5 219.504 154.677 180.284 1 128.09 ? CAB Y01 904 A 1 HETATM 4 C CAN Y01 . . . J 5 217.414 155.693 179.356 1 127.98 ? CAN Y01 904 A 1 HETATM 5 C CAJ Y01 . . . J 5 217.197 154.826 178.123 1 129.14 ? CAJ Y01 904 A 1 HETATM 6 C CAO Y01 . . . J 5 216.705 155.638 176.931 1 129.67 ? CAO Y01 904 A 1 HETATM 7 C CBB Y01 . . . J 5 216.225 154.801 175.737 1 130.61 ? CBB Y01 904 A 1 HETATM 8 C CAC Y01 . . . J 5 214.99 154.001 176.141 1 128.82 ? CAC Y01 904 A 1 HETATM 9 C CBE Y01 . . . J 5 216.005 155.685 174.498 1 129.52 ? CBE Y01 904 A 1 HETATM 10 C CAP Y01 . . . J 5 216.913 156.943 174.491 1 126.16 ? CAP Y01 904 A 1 HETATM 11 C CAQ Y01 . . . J 5 217.218 157.276 173.019 1 126.75 ? CAQ Y01 904 A 1 HETATM 12 C CBG Y01 . . . J 5 216.271 156.367 172.25 1 129.96 ? CBG Y01 904 A 1 HETATM 13 C CBI Y01 . . . J 5 216.235 155.08 173.089 1 130.65 ? CBI Y01 904 A 1 HETATM 14 C CAE Y01 . . . J 5 217.568 154.326 173.051 1 129.06 ? CAE Y01 904 A 1 HETATM 15 C CAU Y01 . . . J 5 215.101 154.225 172.523 1 130.63 ? CAU Y01 904 A 1 HETATM 16 C CAS Y01 . . . J 5 215.301 153.948 171.034 1 130.3 ? CAS Y01 904 A 1 HETATM 17 C CBF Y01 . . . J 5 215.44 155.219 170.191 1 130.81 ? CBF Y01 904 A 1 HETATM 18 C CBD Y01 . . . J 5 216.502 156.171 170.76 1 130.17 ? CBD Y01 904 A 1 HETATM 19 C CAK Y01 . . . J 5 216.435 157.505 170.024 1 127.75 ? CAK Y01 904 A 1 HETATM 20 C CAI Y01 . . . J 5 216.261 157.347 168.551 1 127.09 ? CAI Y01 904 A 1 HETATM 21 C CAZ Y01 . . . J 5 215.978 156.2 167.936 1 128.94 ? CAZ Y01 904 A 1 HETATM 22 C CAV Y01 . . . J 5 215.885 156.148 166.431 1 128.52 ? CAV Y01 904 A 1 HETATM 23 C CBH Y01 . . . J 5 215.657 154.92 168.688 1 131.1 ? CBH Y01 904 A 1 HETATM 24 C CAD Y01 . . . J 5 216.798 153.914 168.466 1 129.26 ? CAD Y01 904 A 1 HETATM 25 C CAT Y01 . . . J 5 214.343 154.341 168.124 1 130.68 ? CAT Y01 904 A 1 HETATM 26 C CAR Y01 . . . J 5 214.319 154.221 166.608 1 129.87 ? CAR Y01 904 A 1 HETATM 27 C CBC Y01 . . . J 5 214.541 155.584 165.986 1 129.17 ? CBC Y01 904 A 1 HETATM 28 O OAW Y01 . . . J 5 214.441 155.398 164.561 1 129.77 ? OAW Y01 904 A 1 HETATM 29 C CAY Y01 . . . J 5 215.402 155.787 163.725 1 130.63 ? CAY Y01 904 A 1 HETATM 30 O OAG Y01 . . . J 5 216.38 155.124 163.476 1 130.7 ? OAG Y01 904 A 1 HETATM 31 C CAM Y01 . . . J 5 215.085 157.129 163.127 1 129.62 ? CAM Y01 904 A 1 HETATM 32 C CAL Y01 . . . J 5 216.189 157.681 162.25 1 129.55 ? CAL Y01 904 A 1 HETATM 33 C CAX Y01 . . . J 5 215.855 159.048 161.632 1 129.02 ? CAX Y01 904 A 1 HETATM 34 O OAH Y01 . . . J 5 216.722 159.53 160.876 1 128.41 ? OAH Y01 904 A 1 HETATM 35 O OAF Y01 . . . J 5 214.756 159.56 161.927 1 129.12 ? OAF Y01 904 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #